genome.fa.s7845.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007845.1 Hibiscus syriacus cultivar Beakdansim tig00110201_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2731752

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  3  of  13  ( 1556 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
478686--479413	83	8.8	83	97	0	1341	38	23	12	26	1.90
478593--479413	166	4.9	166	94	2	1367	37	23	12	26	1.90
478593--479413	249	3.3	249	94	2	1374	37	23	12	26	1.90
480549--480605	9	5.9	10	78	14	66	0	19	0	80	0.71
480549--480604	18	3.1	18	94	2	94	0	17	0	82	0.68
487927--487958	15	2.1	15	94	0	55	46	9	18	25	1.79
492925--492960	18	1.9	19	88	5	56	0	11	22	66	1.22
493390--493438	3	16.0	3	80	4	53	57	2	0	40	1.10
493382--493445	9	7.2	9	74	8	51	54	1	0	43	1.09
493390--493452	24	3.0	21	76	17	67	57	1	0	41	1.08
495905--496032	20	6.3	20	91	0	184	45	24	10	19	1.82
495999--496071	19	3.7	19	87	9	85	34	23	9	32	1.87
496064--496110	18	2.5	19	82	6	60	29	23	14	31	1.95
498809--498851	20	2.2	20	86	0	59	30	13	20	34	1.92
505815--506520	355	2.0	355	98	0	1358	31	20	22	25	1.98
506877--506911	13	2.7	13	86	0	52	11	25	0	62	1.28
509475--509517	20	2.2	20	86	0	59	30	13	20	34	1.92
510808--510842	6	5.8	6	86	0	52	60	20	2	17	1.49
510809--510849	18	2.3	18	95	0	73	56	24	2	17	1.53
511104--511181	20	3.9	20	87	0	111	44	21	16	16	1.86
511198--511280	20	4.2	20	76	0	94	22	16	22	37	1.94
511318--511361	20	2.2	20	91	0	70	22	20	20	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
512938--513032	21	4.5	21	80	4	102	24	18	34	22	1.96
512914--513032	42	2.8	42	84	0	139	22	21	35	21	1.96
513176--513222	12	3.8	12	82	2	58	65	4	2	27	1.22
513176--513217	4	10.5	4	84	0	57	69	4	0	26	1.08
515176--515222	21	2.2	21	85	7	60	48	23	17	10	1.77
515255--515297	20	2.2	20	95	0	77	11	18	20	48	1.79
515265--515308	20	2.2	20	83	0	52	13	15	20	50	1.78
515823--515948	20	6.3	20	92	0	198	19	11	23	46	1.81
515823--515968	60	2.4	60	84	6	154	19	12	22	45	1.84
515943--515985	20	2.2	20	91	8	70	23	18	20	37	1.94
521617--521809	95	2.0	95	100	0	386	33	13	22	30	1.92
525800--525878	29	2.7	29	94	0	140	34	11	25	29	1.91
548009--548054	3	15.3	3	95	0	83	34	2	0	63	1.07
548053--548087	14	2.4	15	85	4	54	60	2	0	37	1.12
548629--548659	14	2.2	14	94	0	53	70	0	29	0	0.87
549507--549552	13	3.5	13	82	11	58	41	0	0	58	0.98
550184--550226	22	2.0	22	81	9	52	20	6	0	72	1.08
560868--560966	7	13.9	7	75	12	94	79	0	18	2	0.82
560871--560966	9	11.2	8	76	17	79	80	0	17	2	0.81
560868--560966	16	6.1	16	77	18	89	79	0	18	2	0.82
560871--560967	27	3.7	26	83	9	117	79	0	18	2	0.83
561276--561320	16	2.8	16	83	10	56	28	8	6	55	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
562100--562492	83	4.7	83	96	1	700	25	13	23	36	1.92
563224--563867	114	5.6	113	93	2	918	36	13	20	29	1.91
564004--564067	3	21.3	3	93	0	110	34	3	0	62	1.11
564066--564100	14	2.4	15	85	4	54	60	2	0	37	1.12
564552--564587	18	2.0	18	100	0	72	77	5	16	0	0.94
571058--571298	42	5.8	42	67	12	120	31	14	22	30	1.94
572359--572396	19	2.1	18	90	5	58	36	18	23	21	1.95
572359--572480	64	1.9	63	86	5	174	32	14	23	28	1.94
572379--572503	64	2.0	64	87	6	182	30	13	24	31	1.94
578209--578266	20	2.6	22	78	15	66	31	22	25	20	1.98
578573--578643	31	2.3	30	90	2	106	38	2	25	33	1.71
579118--579143	3	8.7	3	100	0	52	34	0	0	65	0.93
585519--585589	30	2.3	31	90	2	108	39	2	23	33	1.70
585783--585858	25	3.1	24	81	12	75	25	27	21	26	1.99
588261--588300	21	1.9	21	85	10	55	35	10	2	52	1.48
590760--590808	22	2.2	22	88	0	71	40	12	12	34	1.80
591563--591705	77	1.9	73	85	8	198	30	6	14	48	1.69
594723--594799	24	3.0	26	83	11	104	38	3	23	33	1.73
594947--594981	18	1.9	18	94	0	61	42	2	11	42	1.55
600810--600867	20	3.0	20	87	5	84	22	31	22	24	1.99
601438--601498	12	5.3	11	74	21	54	78	1	3	16	0.96
601438--601492	21	2.6	21	80	8	58	80	1	3	14	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
601439--601498	23	2.6	21	80	17	66	80	1	3	15	0.93
601796--601824	2	14.5	2	100	0	58	51	0	0	48	1.00
602010--602072	2	31.5	2	100	0	126	50	0	0	49	1.00
602080--602120	11	3.6	11	87	6	55	65	4	4	24	1.32
602114--602249	61	2.2	63	77	17	142	68	0	7	23	1.20
602202--602246	12	3.7	12	81	3	54	66	0	4	28	1.11
602613--602642	15	2.0	15	100	0	60	40	26	13	20	1.89
602835--602939	37	2.8	37	88	0	156	29	15	15	40	1.88
603670--605138	106	14.0	106	88	3	2064	23	18	24	34	1.96
605614--605657	16	2.8	16	83	10	54	2	11	9	77	1.08
610292--610339	23	2.1	23	84	7	62	66	0	0	33	0.92
610562--610596	2	17.5	2	100	0	70	51	0	0	48	1.00
610811--610850	12	3.6	11	87	9	55	65	5	5	25	1.34
611539--611643	37	2.8	37	88	0	156	29	15	15	40	1.88
616555--616625	18	3.8	18	76	7	70	32	28	18	21	1.96
619009--619223	103	2.1	103	97	0	403	27	13	22	36	1.91
619242--619300	23	2.6	23	91	0	100	18	23	28	28	1.98
621328--621464	64	2.2	62	82	11	154	24	22	18	35	1.96
623183--623318	44	3.1	44	84	1	175	30	20	17	31	1.96
624913--625228	160	2.0	157	91	4	514	28	14	18	38	1.91
625574--625611	2	19.0	2	100	0	76	50	0	0	50	1.00
627896--627977	37	2.2	37	89	6	123	34	4	18	42	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
632483--632565	37	2.2	37	87	4	114	34	4	18	42	1.71
632456--632567	37	3.2	36	80	10	108	34	6	18	40	1.76
640144--640168	11	2.3	11	100	0	50	72	8	0	20	1.10
641498--641571	15	5.1	14	76	19	55	58	1	0	40	1.07
641505--641569	3	21.0	3	81	6	76	60	1	0	38	1.07
641540--641575	18	2.0	18	94	0	63	58	0	0	41	0.98
641697--643250	76	20.5	76	94	1	2713	36	21	20	21	1.96
643914--643968	22	2.5	22	84	0	74	36	16	14	32	1.89
648632--648672	20	2.0	20	85	0	55	53	7	2	36	1.42
655837--655910	15	5.1	14	76	19	55	58	1	0	40	1.07
655844--655908	3	21.0	3	81	6	76	60	1	0	38	1.07
655879--655914	18	2.0	18	94	0	63	58	0	0	41	0.98
656924--657020	30	3.3	29	78	5	104	48	11	14	25	1.77
657032--657073	21	2.0	21	86	4	59	61	0	2	35	1.09
657461--657499	17	2.4	17	95	4	71	43	0	5	51	1.24
657644--657688	23	2.0	23	82	8	56	51	6	11	31	1.63
658268--658342	22	3.2	23	75	17	82	54	13	0	32	1.39
658314--658415	32	3.5	32	72	27	118	52	9	0	37	1.34
658297--658528	54	4.2	54	72	15	215	52	11	0	35	1.41
658204--658650	134	3.2	133	83	11	526	52	10	0	36	1.42
658346--658388	22	2.0	22	95	0	77	51	11	0	37	1.39
658372--658423	18	3.1	18	68	21	58	55	11	0	32	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
658348--658396	22	2.2	22	85	3	62	55	12	0	32	1.37
658453--658541	18	5.4	18	63	26	54	53	10	2	33	1.47
658402--658476	22	3.2	23	71	17	73	54	14	0	30	1.41
658448--658651	32	6.7	32	83	12	261	51	11	1	35	1.47
658314--658753	198	2.2	195	86	7	604	52	11	0	35	1.43
658544--658586	22	2.0	22	100	0	86	51	13	0	34	1.42
658431--658788	54	6.5	53	73	20	272	52	11	0	35	1.43
658546--658594	22	2.2	22	88	3	71	55	14	0	30	1.40
658683--658741	18	3.5	18	71	17	63	54	11	0	33	1.37
658368--658753	112	3.4	112	87	7	571	52	11	0	35	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13