genome.fa.s7845.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007845.1 Hibiscus syriacus cultivar Beakdansim tig00110201_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2731752

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  2  of  13  ( 1556 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287674--287737	22	3.1	21	70	20	55	46	4	3	45	1.39
287739--287795	28	2.0	29	96	3	107	21	7	24	47	1.75
287932--287987	28	2.0	28	100	0	112	21	7	25	46	1.76
287705--288090	192	2.0	193	98	1	749	26	14	14	44	1.84
288476--288580	41	2.5	41	85	8	142	17	18	20	43	1.88
289032--289082	21	2.6	19	79	11	66	1	39	19	39	1.63
291448--291474	12	2.2	12	100	0	54	55	0	7	37	1.28
291731--291784	20	2.7	20	71	28	60	57	3	16	22	1.55
293395--293422	8	3.5	8	100	0	56	89	0	0	10	0.49
293481--293570	32	3.0	29	82	10	117	43	6	5	44	1.53
293633--293657	13	1.9	13	100	0	50	56	0	0	44	0.99
293543--293734	34	5.2	34	78	17	131	48	4	3	44	1.37
293747--293794	23	2.0	26	88	12	75	45	10	6	37	1.64
298032--298068	12	3.0	12	84	7	56	54	0	0	45	1.00
298030--298067	13	3.0	13	88	3	60	57	0	0	42	0.98
300760--300859	33	3.0	34	83	2	139	39	3	4	54	1.35
301381--301450	21	3.3	20	90	5	95	18	27	35	18	1.94
301454--301501	21	2.3	21	85	0	60	22	12	39	25	1.89
304605--304644	21	1.9	21	84	0	53	62	5	2	30	1.29
304870--304908	18	2.2	18	86	4	53	43	5	2	48	1.38
306248--306299	25	2.1	24	85	3	68	42	0	11	46	1.40
321855--321959	53	2.0	53	86	0	147	34	14	16	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322257--322331	34	2.1	36	88	9	111	40	2	14	42	1.60
322962--323003	20	2.0	21	86	4	59	40	33	9	16	1.81
324035--324113	28	2.8	28	86	9	117	17	21	16	44	1.87
331154--331310	64	2.5	63	78	10	176	26	18	19	35	1.95
333199--333522	162	2.0	162	100	0	648	37	25	16	21	1.93
341354--341389	18	2.0	18	88	0	54	38	5	27	27	1.79
341352--341438	34	2.6	33	89	7	113	36	4	29	28	1.77
341392--341464	6	12.8	6	74	21	68	36	2	30	30	1.72
341377--341469	22	4.7	22	72	24	98	37	4	29	29	1.76
341377--341464	28	3.1	28	75	18	101	37	3	29	29	1.74
342033--342128	28	3.5	28	88	1	131	44	33	10	11	1.75
342177--342325	32	4.9	32	72	16	109	42	31	11	14	1.81
342054--342303	116	2.1	114	87	8	362	41	31	10	16	1.82
345478--345504	12	2.2	12	100	0	54	7	25	25	40	1.82
345611--346201	55	11.0	54	82	6	389	29	26	16	27	1.97
345722--346207	55	9.1	51	86	7	525	29	27	16	27	1.97
345649--346201	110	5.1	110	85	7	662	29	26	17	26	1.97
347522--347657	16	8.1	16	72	19	82	6	19	0	72	1.11
347543--347649	43	2.5	42	77	17	112	6	19	0	72	1.11
347559--347651	18	5.4	17	75	21	61	6	20	1	72	1.13
347533--347667	8	16.6	7	71	19	54	6	20	0	72	1.11
347543--347664	9	14.0	8	68	19	50	6	19	0	72	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370793--370817	12	2.1	12	100	0	50	44	8	8	40	1.63
370924--370953	15	2.0	15	100	0	60	46	20	0	33	1.51
370940--370974	11	3.0	11	84	15	52	51	28	2	17	1.59
370940--370978	13	3.2	12	89	7	53	48	28	2	20	1.62
371564--371604	12	3.4	12	93	0	64	0	36	29	34	1.58
373033--373071	20	2.0	20	84	0	51	23	7	23	46	1.78
373231--373270	21	1.9	21	89	0	62	10	25	40	25	1.86
373252--373301	23	2.3	23	79	6	68	20	22	40	18	1.92
379031--379055	12	2.1	12	100	0	50	44	8	8	40	1.63
379568--379615	23	2.1	23	84	0	60	39	16	6	37	1.74
385617--385705	33	2.7	34	87	5	121	28	13	23	34	1.93
389011--389239	103	2.2	105	91	3	365	37	21	13	27	1.91
397726--397763	19	2.1	18	85	9	51	28	36	15	18	1.92
398427--398460	14	2.5	13	85	4	50	61	26	8	2	1.40
398718--398793	24	3.1	24	80	3	89	52	13	14	19	1.74
400043--400221	94	1.9	94	89	0	277	52	8	3	35	1.48
415905--416230	162	2.0	164	98	1	638	27	20	31	20	1.97
416823--417046	111	2.0	111	100	0	448	32	8	7	52	1.58
419924--420014	45	2.0	45	89	0	137	39	9	19	30	1.85
423101--423164	21	3.0	21	86	4	92	26	21	26	25	2.00
429354--429399	22	2.1	22	95	0	83	23	32	23	19	1.97
429907--429970	21	3.0	21	88	4	101	26	23	26	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
436629--436685	24	2.4	24	88	2	89	22	21	26	29	1.99
437744--437820	17	4.6	17	75	6	86	35	18	19	27	1.95
437810--437839	15	2.0	15	93	0	51	33	16	20	30	1.94
438306--438448	45	3.2	45	87	3	189	36	7	19	36	1.81
438522--438623	23	4.4	23	78	0	105	16	17	26	39	1.91
438611--438662	24	2.2	24	85	0	68	19	21	21	38	1.94
444630--444663	9	3.9	9	84	7	52	38	0	0	61	0.96
444630--444667	17	2.3	17	95	4	69	36	0	0	63	0.95
446992--447058	34	2.0	33	88	8	100	19	4	14	61	1.50
451686--451849	20	8.1	20	84	4	195	39	18	19	23	1.93
451675--451998	41	8.0	41	83	3	259	32	19	17	30	1.95
451686--451998	61	5.2	62	84	4	259	32	19	17	29	1.95
451728--451997	20	13.4	20	81	9	237	30	19	18	31	1.96
455390--455489	19	5.5	19	80	12	111	43	21	23	13	1.87
455390--455508	52	2.3	52	88	1	175	44	21	21	11	1.84
455514--455611	19	5.7	19	68	22	81	10	23	22	43	1.83
455518--455611	33	2.8	33	95	0	161	10	23	22	43	1.84
455537--455593	14	3.7	14	72	20	51	8	26	22	42	1.83
455718--455751	14	2.4	14	95	0	59	44	20	0	35	1.52
457118--457197	42	1.9	42	84	0	106	22	17	38	21	1.93
457622--457691	19	3.6	19	90	1	104	45	24	20	10	1.81
457697--457734	20	1.9	20	100	0	76	5	15	28	50	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
457737--457774	19	2.0	19	94	0	67	15	18	15	50	1.79
457862--458139	94	3.1	93	87	7	410	47	19	12	21	1.82
459834--459896	20	3.2	20	80	8	74	44	19	23	12	1.85
459881--459948	14	4.5	14	79	16	82	45	22	23	8	1.80
459949--460041	33	2.8	33	88	1	123	10	20	24	44	1.83
460591--460664	20	3.6	21	85	5	98	20	21	18	39	1.93
460661--460706	21	2.2	21	84	7	58	36	17	26	19	1.94
462999--463027	12	2.3	13	94	5	51	37	3	0	58	1.15
465815--465910	23	4.2	23	91	0	147	22	26	30	20	1.99
465922--466134	103	2.1	103	96	0	390	36	23	13	25	1.92
467512--467564	20	2.5	21	90	9	90	18	28	22	30	1.98
475542--475577	18	1.9	19	88	5	56	0	11	22	66	1.22
476007--476055	3	16.0	3	80	4	53	57	2	0	40	1.10
475999--476062	9	7.2	9	74	8	51	54	1	0	43	1.09
476007--476069	24	3.0	21	76	17	67	57	1	0	41	1.08
476418--476513	17	5.5	18	69	23	71	19	20	8	51	1.73
476418--476546	40	3.5	39	88	8	175	20	20	9	49	1.76
476311--476661	182	1.9	184	86	6	507	24	19	13	42	1.87
476489--476885	112	3.5	112	97	1	733	25	20	15	38	1.92
476827--476922	39	2.5	39	98	0	183	18	22	8	50	1.74
476714--477037	151	2.1	153	95	2	582	23	20	14	41	1.89
476866--477258	112	3.5	112	94	3	697	25	20	15	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
476453--477406	376	2.6	374	97	1	1771	25	20	15	39	1.91
477200--477295	39	2.5	39	98	0	183	18	22	8	50	1.74
477090--477559	148	3.1	151	94	3	819	24	20	14	40	1.89
477278--477516	73	3.2	73	63	11	198	25	19	16	37	1.93
477351--477409	17	3.4	17	70	25	59	18	23	6	50	1.70
477351--477443	39	2.5	39	92	5	156	19	22	8	49	1.75
476714--477781	521	2.0	525	96	1	1975	25	19	15	39	1.91
477387--477816	113	3.8	113	95	1	758	26	19	16	38	1.92
477387--477816	225	1.9	225	94	1	756	26	19	16	38	1.92
478112--478216	52	2.0	52	100	0	210	33	17	13	36	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13