genome.fa.s7867.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007867.1 Hibiscus syriacus cultivar Beakdansim tig00110239_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3477501

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  11  of  18  ( 2128 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1909531--1909562	2	16.0	2	100	0	64	50	0	0	50	1.00
1911680--1911769	21	4.3	20	92	4	126	18	36	25	18	1.94
1912298--1912383	33	2.6	34	86	3	120	54	3	3	38	1.34
1912288--1912390	33	3.2	32	78	12	104	55	4	2	36	1.36
1912769--1913486	125	5.8	126	95	3	1273	32	20	24	22	1.97
1912769--1913486	247	2.9	250	94	3	1292	32	20	24	22	1.97
1913554--1913594	8	5.2	8	82	5	57	36	29	0	34	1.58
1916530--1916564	11	3.1	11	87	4	52	45	0	0	54	0.99
1920762--1920848	38	2.3	38	93	0	147	47	1	10	41	1.45
1921426--1921539	57	2.0	57	94	0	201	27	16	21	35	1.95
1921514--1921559	20	2.3	20	92	0	74	32	17	19	30	1.95
1921457--1921606	77	1.9	77	95	0	273	29	15	20	35	1.93
1924252--1924296	22	2.0	22	100	0	90	22	8	28	40	1.84
1925954--1926049	21	4.6	21	76	0	93	41	21	13	22	1.88
1925954--1926049	42	2.3	42	81	0	111	41	21	13	22	1.88
1934574--1934700	31	4.1	31	80	6	139	31	18	19	30	1.96
1934698--1934759	30	2.1	30	96	0	115	22	19	25	32	1.97
1939401--1939527	31	4.1	31	79	9	125	31	18	19	29	1.96
1939525--1939586	30	2.1	30	93	0	106	22	19	24	33	1.97
1940657--1940752	21	4.6	21	72	10	79	41	20	14	22	1.89
1941368--1941407	19	2.1	19	86	9	55	22	25	20	32	1.98
1942436--1942558	8	14.6	8	74	17	72	39	1	10	47	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1942436--1942515	2	39.5	2	82	7	99	45	1	6	47	1.36
1942606--1942640	15	2.3	15	90	0	52	54	2	5	37	1.39
1944125--1944172	13	3.6	13	81	15	62	47	0	8	43	1.33
1944472--1944512	16	2.4	18	76	19	52	41	0	7	51	1.30
1947337--1947862	199	2.6	201	80	8	542	33	10	22	33	1.88
1949039--1949106	25	2.7	25	97	0	127	29	20	23	26	1.99
1954549--1954629	22	3.4	23	76	15	76	70	1	8	19	1.20
1954597--1954642	21	2.2	20	82	17	58	67	0	8	23	1.18
1963056--1963224	81	2.1	81	88	2	250	26	21	11	40	1.88
1963362--1963911	54	10.2	54	89	0	742	29	20	17	32	1.95
1963880--1963944	33	2.0	33	90	0	103	33	21	16	27	1.95
1967623--1967791	81	2.1	81	86	4	234	22	24	13	39	1.90
1967954--1968696	54	13.8	54	90	3	1077	28	18	18	34	1.95
1969256--1969298	20	2.2	20	86	0	59	44	13	11	30	1.80
1970462--1970527	27	2.4	30	76	21	81	68	0	10	21	1.19
1970473--1970522	21	2.5	21	81	15	61	68	0	10	22	1.19
1970468--1970525	21	2.7	21	75	17	57	67	0	12	20	1.22
1980198--1980239	21	1.9	23	85	9	61	45	7	9	38	1.64
1991952--1992011	28	2.1	28	90	6	95	31	15	11	41	1.82
1991979--1992020	21	1.9	23	90	9	70	30	11	11	45	1.77
1992501--1992557	19	2.9	20	84	5	80	21	17	10	50	1.75
1998800--1998853	17	3.3	17	82	14	69	12	27	33	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1998863--1998894	12	2.8	11	95	4	55	18	3	0	78	0.89
1999556--1999598	16	2.7	16	96	0	77	23	23	34	18	1.96
1999653--1999687	15	2.3	15	100	0	70	31	14	5	48	1.67
2002159--2002184	3	8.7	3	100	0	52	30	0	0	69	0.89
2002215--2002253	20	2.0	20	90	10	62	28	15	0	56	1.40
2002460--2002502	16	2.6	17	77	3	52	32	4	2	60	1.30
2006420--2006481	31	2.0	31	84	6	81	32	9	20	37	1.86
2006756--2007204	121	3.8	121	78	12	527	34	25	16	23	1.95
2006942--2007133	55	3.5	55	92	0	303	33	25	18	22	1.97
2008047--2008137	45	2.0	46	89	2	139	28	19	24	27	1.99
2008157--2008195	20	2.0	20	89	0	60	20	15	33	30	1.94
2010397--2010463	31	2.2	31	100	0	134	32	2	20	43	1.67
2016346--2016385	21	1.9	21	89	0	62	37	35	0	27	1.57
2017602--2017675	23	3.2	23	77	17	64	16	1	27	55	1.49
2027872--2027916	24	2.0	22	82	8	54	46	2	0	51	1.13
2032171--2032295	62	2.1	62	81	4	148	40	15	13	31	1.86
2032729--2032829	51	2.0	51	94	0	175	42	0	3	52	1.26
2034157--2034181	13	1.9	13	100	0	50	48	0	0	52	1.00
2039639--2040882	622	2.0	623	93	2	2151	43	15	11	29	1.81
2041151--2041196	10	4.6	10	86	10	51	69	0	4	26	1.07
2041158--2041199	10	4.3	9	88	11	57	71	0	2	26	0.98
2041207--2041274	7	9.9	7	74	15	52	82	1	5	10	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2041237--2041274	21	1.9	20	89	10	60	78	0	7	13	0.94
2041205--2041300	29	3.4	28	80	5	84	76	2	7	14	1.10
2043081--2043989	85	10.8	84	76	10	797	24	18	21	35	1.96
2043679--2043992	173	1.8	170	90	2	511	22	19	22	35	1.96
2044060--2044526	124	3.8	124	90	0	738	23	14	25	36	1.93
2044473--2044588	34	3.5	33	72	9	119	21	10	27	40	1.86
2044434--2044592	66	2.4	66	92	0	255	23	13	25	37	1.91
2044680--2044845	64	2.6	64	87	4	246	28	13	21	36	1.91
2045765--2045975	95	2.4	86	73	16	196	31	18	18	31	1.95
2045800--2045993	95	2.0	96	88	1	291	32	17	15	34	1.91
2048574--2048671	14	7.2	13	74	12	72	75	2	2	20	1.00
2048580--2048623	18	2.4	19	85	11	65	72	0	2	25	0.96
2048629--2048687	13	4.1	14	77	14	50	81	1	6	10	0.94
2048532--2048704	21	7.8	21	66	20	68	73	1	4	20	1.08
2048648--2048682	8	4.4	8	85	0	52	82	0	5	11	0.82
2048532--2048665	14	9.1	14	65	22	51	73	1	2	21	1.04
2048743--2048809	27	2.5	26	79	15	66	73	4	4	17	1.18
2050207--2050275	34	2.1	32	86	5	93	72	1	2	23	1.06
2050631--2050689	31	1.9	31	92	0	100	42	5	8	44	1.57
2050713--2051297	22	26.6	22	87	5	781	48	9	0	41	1.40
2053330--2053399	28	2.4	31	81	13	78	55	5	2	35	1.38
2054045--2054200	72	2.2	72	89	2	233	25	17	23	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2056952--2056991	21	1.9	21	100	0	80	35	5	15	45	1.68
2058282--2058319	3	12.3	3	88	5	58	28	0	2	68	1.03
2060283--2060315	14	2.3	15	94	5	59	27	9	6	57	1.53
2068775--2068831	24	2.4	24	84	0	78	40	10	19	29	1.85
2069122--2069173	21	2.5	21	93	0	86	19	7	36	36	1.80
2073863--2073925	28	2.2	29	83	8	76	52	4	3	39	1.38
2073899--2073948	22	2.3	21	79	3	55	44	8	4	44	1.52
2073971--2074028	24	2.5	24	94	2	100	43	8	3	44	1.51
2073946--2074063	60	2.0	59	88	6	175	43	10	2	44	1.51
2073994--2074101	37	2.9	38	83	8	143	41	12	1	44	1.52
2074130--2074173	2	22.0	2	90	9	72	50	2	0	47	1.13
2073942--2074153	98	2.2	97	78	8	232	42	8	2	46	1.46
2075522--2075550	12	2.3	13	94	5	51	75	0	0	24	0.80
2076025--2076251	102	2.2	102	77	9	230	34	3	22	38	1.73
2077217--2077277	32	1.9	32	83	6	79	34	11	0	54	1.37
2081027--2081062	18	1.9	19	88	5	56	50	0	13	36	1.43
2083962--2084074	54	2.1	54	98	1	219	30	25	5	38	1.78
2103406--2103624	107	2.0	109	94	1	388	22	13	11	52	1.72
2106583--2106642	6	10.0	6	100	0	120	16	33	16	33	1.92
2107704--2107825	32	3.8	31	75	12	97	22	11	24	40	1.87
2108401--2108452	18	2.8	17	77	11	50	42	1	0	55	1.10
2108545--2108618	32	2.3	32	88	0	103	10	8	29	51	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2108545--2108617	16	4.6	16	75	0	65	10	6	30	52	1.63
2108582--2108656	38	2.0	38	84	5	98	10	12	25	52	1.70
2108602--2108650	22	2.2	23	78	10	57	10	10	26	53	1.66
2109483--2109537	20	2.8	20	77	8	67	45	12	18	23	1.83
2109522--2109889	177	2.1	175	87	2	522	42	11	13	32	1.81
2109698--2110132	197	2.2	197	87	4	628	41	12	14	31	1.83
2112390--2112436	18	2.6	18	93	0	76	29	0	25	44	1.54
2114640--2114693	20	2.5	22	79	5	58	33	16	24	25	1.96
2115088--2115190	44	2.3	46	86	3	138	42	11	22	23	1.86
2121469--2121522	20	2.5	22	79	5	58	33	16	24	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18