genome.fa.s7867.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007867.1 Hibiscus syriacus cultivar Beakdansim tig00110239_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3477501

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  3  of  18  ( 2128 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435550--435587	19	2.1	18	85	14	51	26	18	10	44	1.82
443624--443722	20	4.9	20	78	2	101	41	17	12	29	1.85
443614--443728	60	1.9	60	87	0	167	40	17	13	29	1.87
452068--452273	95	2.2	96	79	4	220	35	17	20	26	1.95
452708--453016	79	3.9	79	88	1	476	35	11	23	28	1.90
457293--457326	16	2.1	16	100	0	68	11	35	23	29	1.90
459199--459243	22	2.0	23	86	4	65	28	13	31	26	1.94
459120--459310	95	2.0	96	84	1	249	33	15	24	26	1.95
459760--460068	79	3.9	79	91	0	501	35	11	23	28	1.90
468969--469036	20	3.5	20	75	15	79	38	11	25	25	1.89
469511--469769	54	4.8	54	85	1	340	32	18	16	31	1.94
469514--469599	27	3.2	26	65	28	63	30	20	17	31	1.96
469511--469769	109	2.4	109	89	1	396	32	18	16	31	1.94
476842--476901	31	2.0	31	81	9	72	46	8	6	38	1.60
483171--483233	23	2.8	23	82	2	83	49	17	19	14	1.80
484731--484808	31	2.5	31	91	0	129	20	10	15	53	1.70
485268--485307	17	2.4	17	86	0	53	32	15	12	40	1.84
485314--485373	17	3.5	17	68	8	50	30	15	8	46	1.74
485364--485409	18	2.6	18	92	0	74	32	6	13	47	1.68
488970--489028	17	3.5	17	68	13	50	28	15	8	47	1.74
489019--489064	18	2.6	18	92	0	74	32	6	13	47	1.68
493748--493799	20	2.6	20	96	0	95	46	0	15	38	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
493912--493987	20	3.8	19	81	11	89	42	19	3	34	1.70
494042--494090	20	2.5	20	86	6	64	42	8	4	44	1.53
494167--494224	31	1.9	30	86	10	82	44	8	3	43	1.51
498794--498856	31	2.0	31	90	6	101	33	6	25	34	1.81
504382--504473	47	2.0	47	91	0	148	45	11	21	20	1.83
512955--513160	79	2.6	81	83	7	253	29	22	12	35	1.91
513380--514115	54	13.6	54	85	0	844	25	20	19	34	1.96
513380--514207	54	15.3	55	82	4	381	26	20	19	33	1.96
514646--514715	21	3.5	19	78	7	59	30	17	17	35	1.92
517604--517845	81	3.0	80	85	2	270	30	20	10	38	1.87
518069--518614	54	10.4	54	79	9	531	24	19	20	35	1.95
518123--518314	46	4.0	46	80	11	213	21	18	21	38	1.93
524636--524701	28	2.4	28	92	2	107	15	9	33	42	1.78
525287--525333	18	2.7	18	86	3	69	27	29	8	34	1.87
527280--527331	20	2.7	19	88	11	72	11	19	48	21	1.80
541003--541078	38	2.0	38	92	0	125	30	35	11	22	1.90
542689--542879	57	3.4	56	87	3	258	32	22	17	27	1.96
542780--542964	85	2.2	84	87	2	244	34	23	15	25	1.95
542868--543120	110	2.3	110	88	3	373	33	24	14	27	1.94
542866--543131	57	4.8	57	86	5	364	33	24	15	27	1.95
559088--559255	60	2.8	60	79	5	187	33	25	5	35	1.79
566638--566693	28	2.0	29	86	10	80	32	0	5	62	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
567234--567503	143	1.9	143	91	0	441	32	20	17	30	1.95
569268--569306	16	2.4	16	95	0	69	33	17	20	28	1.96
569376--569596	47	4.9	47	90	4	300	66	4	4	23	1.31
569993--570052	21	2.9	21	79	0	66	26	18	31	23	1.97
570799--570839	21	1.9	22	85	14	59	53	9	0	36	1.34
574610--574642	2	16.5	2	93	0	57	48	0	51	0	1.00
581697--581756	30	2.0	30	100	0	120	23	26	33	16	1.96
584446--584484	3	13.0	3	94	0	69	64	0	2	33	1.08
584671--585494	137	6.0	137	84	0	1020	28	16	27	27	1.97
585492--585744	36	7.5	36	69	21	163	40	13	18	27	1.88
585496--585744	66	3.8	65	91	2	399	40	13	18	27	1.88
586060--586211	73	2.1	73	96	0	277	49	9	3	37	1.53
586494--586664	47	3.8	47	89	4	228	32	19	7	40	1.79
586779--586895	61	1.9	61	87	0	171	31	29	15	23	1.95
596505--596536	3	10.7	3	100	0	64	65	0	0	34	0.93
596630--597169	235	2.3	231	82	5	647	42	18	12	26	1.85
612985--613020	2	18.0	2	100	0	72	50	0	0	50	1.00
624224--624301	2	39.0	2	100	0	156	50	0	0	50	1.00
630509--630606	36	2.7	36	81	7	92	34	13	10	41	1.78
630554--630697	37	4.1	37	69	18	135	32	17	10	39	1.83
630589--630718	67	1.9	67	85	3	181	36	18	9	36	1.83
630744--631074	66	5.0	66	86	1	448	29	18	12	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
630897--631010	36	3.4	34	69	18	94	28	19	12	40	1.87
630922--631030	30	3.4	30	67	18	85	27	16	14	41	1.87
633045--633097	2	27.0	2	96	3	99	50	0	0	49	1.00
633200--633226	2	13.5	2	100	0	54	51	0	0	48	1.00
639511--639563	21	2.5	21	87	6	72	69	7	0	22	1.13
644111--644394	36	8.4	36	66	18	153	40	15	20	23	1.90
644261--644322	21	3.2	21	68	25	64	43	12	19	24	1.86
644176--644394	102	2.1	102	88	3	325	40	15	20	24	1.90
644111--644291	66	2.7	66	90	1	292	41	14	20	22	1.89
645714--645761	23	2.2	21	88	7	69	0	20	8	70	1.12
655324--655348	2	12.5	2	100	0	50	48	0	0	52	1.00
655899--655941	19	2.3	18	80	11	50	60	4	11	23	1.50
658098--658140	18	2.4	18	100	0	86	25	23	20	30	1.99
661598--661714	3	39.0	3	100	0	234	66	0	0	33	0.92
661893--661938	23	2.0	23	86	0	65	50	21	19	8	1.75
663781--663941	64	2.5	64	78	7	175	34	17	19	28	1.95
670667--670820	64	2.4	64	76	8	152	35	17	18	27	1.94
680353--680460	36	3.0	36	81	0	126	32	15	12	39	1.84
685093--685120	13	2.2	13	100	0	56	39	21	7	32	1.80
685781--685816	18	2.0	18	88	0	54	47	19	16	16	1.83
687844--687876	17	2.1	16	88	11	50	57	12	6	24	1.57
690008--690054	14	3.4	14	85	2	60	44	2	0	53	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
702637--702674	3	12.7	3	83	10	51	39	0	0	60	0.97
702698--702746	25	2.0	25	84	8	64	38	26	10	24	1.87
707710--707767	26	2.2	26	84	0	80	15	5	13	65	1.43
707878--707933	25	2.2	25	83	0	67	14	3	10	71	1.26
709843--709900	31	1.9	31	89	6	93	17	18	8	55	1.67
713041--713096	20	2.8	20	86	2	69	37	8	16	37	1.80
713140--713190	21	2.4	22	83	6	68	23	27	23	25	2.00
713704--713795	31	3.0	31	91	0	148	35	19	18	26	1.95
715387--715617	75	3.1	76	84	3	290	32	16	9	41	1.81
715690--715809	39	3.1	39	80	2	152	32	17	15	35	1.91
715692--715810	38	3.1	38	81	1	148	32	17	15	34	1.91
715971--716046	35	2.1	36	90	2	118	30	15	15	38	1.89
716035--716107	36	2.0	38	83	5	96	34	19	6	39	1.78
716149--716593	65	6.6	65	72	13	211	28	19	13	38	1.90
716283--716404	36	3.4	36	81	0	145	22	21	14	40	1.90
716233--716662	137	3.1	137	87	0	601	27	19	13	38	1.90
716423--716751	36	9.3	36	77	6	298	28	20	13	37	1.90
716324--716506	101	1.8	101	87	0	276	27	21	12	37	1.90
716283--716817	173	3.1	170	73	11	433	27	20	13	39	1.90
717022--717125	3	34.7	3	96	3	192	33	0	0	66	0.92
718655--718722	30	2.4	29	83	11	79	29	10	14	45	1.78
720859--720898	21	1.9	21	85	10	55	37	17	10	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
722187--722251	33	2.0	33	82	11	80	76	3	15	4	1.07
723394--723562	76	2.2	76	82	6	191	32	16	10	40	1.83
723494--723626	69	1.9	69	81	6	162	34	18	9	38	1.82
723621--723744	39	3.2	39	89	2	196	33	15	16	34	1.91
723625--723742	38	3.1	38	90	1	182	32	16	16	34	1.91
724167--724349	69	2.7	66	85	5	242	27	18	13	39	1.89
724301--724386	35	2.4	36	90	3	138	24	23	13	38	1.91
724233--724487	100	2.5	101	88	3	368	28	20	12	38	1.89
724403--724696	36	8.4	36	74	10	178	28	21	13	37	1.91
724301--724660	137	2.6	136	88	2	533	27	21	13	37	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18