genome.fa.s7867.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007867.1 Hibiscus syriacus cultivar Beakdansim tig00110239_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3477501

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  18  of  18  ( 2128 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3308953--3309255	136	2.3	135	85	5	400	29	25	17	28	1.97
3311251--3311297	22	2.1	22	92	0	76	44	8	8	38	1.65
3311348--3311438	24	3.8	24	79	2	94	40	8	3	47	1.51
3311444--3311534	21	4.4	21	65	15	73	51	8	2	37	1.45
3313560--3313585	11	2.4	11	100	0	52	26	0	15	57	1.38
3313611--3313658	16	2.9	17	87	9	64	18	8	0	72	1.08
3320242--3320565	113	2.9	113	84	5	415	33	23	14	29	1.94
3320729--3320758	15	2.0	15	93	0	51	20	30	23	26	1.98
3323949--3323991	21	2.2	20	87	8	61	27	9	11	51	1.69
3324214--3324267	19	2.8	20	88	5	83	22	33	20	24	1.97
3324291--3324349	20	2.9	20	79	2	73	15	33	22	28	1.94
3324441--3324480	20	1.9	22	90	10	66	37	40	10	12	1.77
3325034--3325278	112	2.2	111	84	5	316	31	25	15	27	1.96
3325170--3325463	136	2.2	133	84	6	387	28	25	18	26	1.98
3331090--3331141	13	4.0	13	84	0	59	34	15	21	28	1.94
3330961--3331118	85	1.9	85	82	7	205	31	15	20	32	1.94
3332598--3332663	21	3.0	21	68	23	55	25	18	22	33	1.97
3332597--3332700	44	2.4	44	86	0	136	27	17	21	33	1.95
3337908--3338064	65	2.4	64	83	9	194	31	17	21	29	1.96
3339252--3339277	11	2.4	11	100	0	52	26	0	15	57	1.38
3339303--3339350	16	2.9	17	87	9	64	18	8	0	72	1.08
3341562--3341690	62	2.0	66	91	8	214	32	6	31	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3342489--3342530	20	2.0	21	90	4	68	19	11	33	35	1.88
3342637--3342676	20	2.0	21	95	5	73	25	20	22	32	1.98
3344206--3344254	20	2.5	19	83	9	55	34	12	2	51	1.51
3347042--3347435	182	2.2	181	86	4	544	41	11	8	38	1.72
3347042--3347485	181	2.4	181	85	4	567	40	11	9	38	1.73
3348920--3348945	2	13.0	2	100	0	52	50	0	0	50	1.00
3356643--3356854	38	5.7	36	78	12	214	44	2	11	41	1.55
3356639--3356849	76	2.8	73	87	10	277	44	2	11	41	1.55
3356891--3356924	17	1.9	17	88	5	50	11	5	2	79	1.02
3356876--3356926	13	4.0	13	77	12	52	13	7	1	76	1.09
3357174--3357213	21	1.9	21	85	10	55	50	27	17	5	1.67
3357604--3357646	17	2.5	17	80	0	50	13	4	0	81	0.84
3363709--3363752	22	2.0	22	90	0	70	27	22	31	18	1.97
3365067--3365099	2	16.5	2	100	0	66	51	0	0	48	1.00
3365023--3365136	52	2.2	51	89	6	169	44	2	7	45	1.44
3365083--3365336	37	6.7	37	83	8	307	44	3	10	42	1.54
3365079--3365325	117	2.1	117	86	7	351	44	3	10	42	1.54
3365352--3365401	19	2.4	22	78	21	63	14	8	0	78	0.97
3365357--3365400	20	2.2	20	88	11	65	13	9	0	77	0.99
3365357--3365392	18	1.9	19	88	5	56	13	11	0	75	1.06
3365356--3365404	21	2.5	20	83	16	66	14	8	0	77	0.98
3366055--3366083	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3375191--3375245	19	2.8	20	81	13	71	40	0	0	60	0.97
3377753--3377805	27	2.0	27	100	0	106	32	22	15	30	1.94
3379833--3380088	138	1.9	138	85	1	361	40	17	14	28	1.88
3380734--3380782	19	2.6	19	96	0	89	32	30	16	20	1.94
3385879--3386247	183	2.0	184	99	0	731	27	25	23	23	2.00
3387031--3387294	138	1.9	140	83	4	347	40	17	12	29	1.86
3387911--3387963	20	2.7	20	93	0	97	24	28	9	37	1.86
3388607--3388662	13	4.3	13	93	0	85	25	21	17	35	1.95
3388607--3388671	26	2.5	26	89	0	94	23	23	16	36	1.94
3388616--3388671	13	4.3	13	93	0	94	21	23	16	39	1.92
3388643--3388808	85	2.0	85	86	2	235	28	21	18	31	1.97
3405100--3405135	17	2.1	17	94	0	63	25	0	0	75	0.81
3412188--3412222	12	3.0	12	87	8	54	62	8	8	20	1.49
3413267--3413331	28	2.5	25	75	20	62	9	20	6	64	1.44
3413318--3413355	20	1.9	20	84	10	51	2	15	0	81	0.80
3418939--3419193	138	1.8	138	84	3	343	41	16	14	27	1.87
3423762--3423812	23	2.2	23	96	0	93	31	9	17	41	1.82
3424123--3424169	20	2.3	20	88	0	67	36	2	4	57	1.30
3434333--3434391	29	2.0	29	96	0	109	50	11	13	23	1.74
3435271--3435303	16	2.1	16	94	0	57	21	0	18	60	1.36
3435354--3435452	33	3.1	33	92	2	166	36	24	15	24	1.93
3436600--3436627	14	2.0	14	100	0	56	42	14	14	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3437379--3437418	21	1.9	21	84	0	53	20	27	22	30	1.98
3440068--3440129	31	1.9	33	83	6	83	37	25	14	22	1.92
3442409--3442763	81	4.4	81	83	3	403	25	19	18	37	1.94
3442409--3442720	160	1.9	161	85	2	430	25	19	17	38	1.93
3442790--3443261	47	9.3	47	66	16	185	31	21	17	29	1.96
3442731--3443274	102	5.3	102	89	1	766	31	20	17	29	1.96
3443411--3443554	62	2.3	62	85	0	207	33	15	24	26	1.95
3443525--3443607	40	2.1	38	84	4	103	38	18	15	27	1.91
3443637--3443743	42	2.6	41	75	8	117	31	23	22	22	1.98
3445014--3445057	13	3.4	13	93	0	70	34	18	13	34	1.90
3445817--3445841	12	2.1	12	100	0	50	60	8	24	8	1.52
3451052--3451141	40	2.2	40	86	3	128	25	12	16	45	1.82
3453760--3453820	25	2.4	25	80	5	68	50	6	1	40	1.38
3457434--3457511	13	6.0	13	92	0	120	24	21	17	35	1.95
3457658--3457698	2	20.5	2	100	0	82	48	0	0	51	1.00
3457835--3457866	16	2.0	16	93	0	55	53	18	3	25	1.59
3458532--3458556	11	2.3	11	100	0	50	52	16	12	20	1.75
3461963--3462029	2	33.0	2	93	3	116	49	1	1	47	1.19
3462225--3462372	75	2.0	75	89	2	226	48	6	13	31	1.67
3462309--3462338	13	2.2	14	94	5	53	46	6	10	36	1.64
3474758--3474798	20	2.0	21	90	4	66	26	31	9	31	1.89
3475205--3475246	11	3.6	12	84	12	52	40	2	0	57	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18

The End!