genome.fa.s7867.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007867.1 Hibiscus syriacus cultivar Beakdansim tig00110239_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3477501

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  6  of  18  ( 2128 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
951180--951385	101	2.0	104	97	2	391	44	16	14	24	1.85
951691--951852	64	2.5	63	83	4	209	27	16	26	30	1.96
951800--951850	19	2.7	19	85	8	70	25	15	35	23	1.94
951694--951872	64	2.8	63	80	11	193	27	16	24	30	1.97
954057--954083	13	2.1	13	100	0	54	37	14	25	22	1.93
956137--956467	167	2.0	163	97	2	626	42	22	11	24	1.86
964568--964625	15	4.1	15	72	22	54	48	0	13	37	1.43
964566--964645	42	2.0	40	85	9	108	47	0	12	40	1.41
964620--964676	27	2.1	27	86	3	78	42	1	7	49	1.40
970479--970536	16	3.8	16	74	21	61	81	0	12	6	0.88
970482--970539	15	3.5	17	76	19	52	81	0	12	6	0.88
970487--970558	19	3.8	18	75	8	54	81	1	8	8	0.92
970478--970559	31	2.7	29	81	14	85	79	1	12	7	0.99
972050--972484	132	3.3	132	79	6	332	30	18	16	34	1.93
972129--972484	132	2.7	131	82	4	441	30	19	16	33	1.94
972130--972544	132	3.2	129	78	6	388	31	19	15	33	1.93
972878--972935	21	2.8	20	76	10	62	46	0	5	48	1.24
972925--972958	2	18.0	2	88	11	54	50	0	0	50	1.00
977584--977646	22	2.7	24	87	9	71	26	7	28	36	1.85
977593--977646	22	2.5	22	96	0	99	27	9	25	37	1.87
977636--977687	20	2.6	20	81	6	61	26	17	28	26	1.97
977781--977833	20	2.5	21	84	6	72	20	20	32	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
978565--978701	21	6.3	21	73	18	111	22	16	27	32	1.96
978564--978701	65	2.1	65	91	0	222	22	16	27	33	1.96
978630--978715	44	2.0	44	88	0	127	24	17	26	31	1.97
982880--982905	11	2.4	11	100	0	52	0	7	0	92	0.39
983461--983511	20	2.5	21	84	9	70	29	17	25	27	1.98
984378--984523	65	2.2	65	87	4	206	23	16	26	33	1.96
984379--984478	21	4.7	22	74	18	95	22	17	28	33	1.96
984444--984529	44	2.0	44	86	9	122	25	16	25	32	1.96
985884--985928	23	2.0	23	86	0	63	26	28	24	20	1.99
985907--986210	149	2.0	149	97	0	572	35	20	16	27	1.94
992851--992895	23	2.0	23	86	0	63	26	28	24	20	1.99
992874--993177	149	2.0	149	97	0	572	35	20	16	27	1.94
995224--995268	16	2.9	17	75	18	53	35	0	6	57	1.25
997434--997486	26	2.0	26	88	0	79	43	11	11	33	1.76
998927--998998	36	2.0	36	100	0	144	44	8	13	33	1.74
1007428--1007477	22	2.2	23	82	7	66	40	10	14	36	1.79
1007993--1008240	82	3.0	83	85	2	320	41	14	20	22	1.89
1011162--1011240	41	1.9	42	89	2	124	31	13	24	30	1.94
1014031--1014081	16	3.2	16	91	0	84	45	0	33	21	1.52
1016665--1016744	42	1.9	42	84	5	108	31	15	26	27	1.95
1020180--1020286	2	57.0	2	75	12	102	50	0	0	49	1.00
1025457--1025744	43	6.7	44	74	9	211	45	9	21	22	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1025456--1025744	130	2.2	127	83	6	350	45	9	21	22	1.81
1025730--1025834	42	2.5	43	76	7	117	52	5	15	26	1.65
1032773--1032877	31	3.4	31	75	11	83	26	30	26	16	1.96
1033814--1033859	20	2.3	20	100	0	92	26	19	0	54	1.44
1048529--1048589	4	15.8	4	73	13	56	77	0	21	1	0.86
1048530--1048580	11	4.7	11	78	11	52	78	0	21	0	0.75
1048552--1048578	13	2.1	13	100	0	54	85	0	14	0	0.61
1050526--1050745	54	4.1	54	82	5	248	31	10	18	39	1.85
1050526--1050745	53	4.1	53	81	5	244	31	10	18	39	1.85
1050810--1050931	42	2.9	42	83	6	133	27	20	22	29	1.98
1051758--1052513	136	5.5	136	84	2	860	35	17	22	25	1.95
1064134--1064193	22	2.7	22	97	2	111	28	18	15	38	1.91
1064515--1064627	23	5.1	23	69	17	62	45	0	0	53	1.06
1064541--1064617	28	2.9	26	73	21	70	50	0	1	48	1.09
1064598--1064644	24	2.0	24	87	8	69	44	2	0	53	1.12
1064695--1064738	23	2.0	21	86	8	61	50	0	0	50	1.00
1064708--1064740	11	2.8	12	86	9	50	51	0	0	48	1.00
1069031--1069070	2	20.0	2	100	0	80	50	0	0	50	1.00
1070211--1070248	20	1.9	20	88	0	58	39	13	0	47	1.42
1082274--1082321	20	2.4	20	92	0	78	25	22	4	47	1.69
1094303--1094348	24	1.9	24	100	0	92	41	10	13	34	1.79
1101735--1101936	65	3.1	64	78	12	209	30	23	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1105059--1105202	22	6.5	22	85	0	198	15	22	29	31	1.95
1105057--1105202	66	2.2	66	88	0	220	16	22	29	31	1.96
1108786--1108834	17	2.7	19	87	6	75	28	16	28	26	1.97
1110243--1110327	11	7.2	11	72	22	66	31	36	3	28	1.74
1110241--1110344	36	2.9	36	95	1	183	30	36	3	28	1.75
1114588--1114669	11	7.2	11	71	23	55	31	36	3	28	1.75
1114585--1114678	33	2.8	33	87	10	145	29	36	5	28	1.79
1114581--1114686	35	3.0	35	88	9	155	31	34	4	29	1.78
1119387--1119423	2	19.5	2	89	10	60	51	0	0	48	1.00
1119387--1119423	15	2.5	15	95	0	65	51	0	0	48	1.00
1145167--1145205	15	2.8	14	85	11	53	46	5	17	30	1.70
1147723--1147793	33	2.2	33	84	0	88	22	30	25	21	1.98
1156659--1156729	30	2.4	30	100	0	142	22	11	36	29	1.89
1157967--1158054	43	2.0	44	95	2	160	53	12	12	21	1.71
1169894--1170108	107	2.0	107	83	7	267	37	13	15	33	1.86
1171197--1171498	116	2.6	115	82	2	363	34	16	23	25	1.95
1171575--1171684	36	3.0	36	81	1	130	31	13	7	47	1.70
1172074--1172423	116	3.0	115	82	4	380	36	16	21	26	1.94
1172390--1172499	44	2.5	44	85	2	141	32	24	14	28	1.94
1172479--1172524	23	2.0	23	86	0	65	39	19	19	21	1.93
1172547--1172599	16	2.9	20	71	26	62	47	11	24	16	1.80
1173845--1174024	29	6.3	28	86	3	200	51	12	2	33	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1173845--1174007	57	2.8	57	85	1	211	52	12	2	31	1.52
1173845--1174048	57	3.6	55	80	6	194	51	13	2	32	1.56
1173843--1174050	86	2.4	85	79	6	231	51	12	2	32	1.55
1184253--1184325	20	3.6	21	75	18	66	35	0	0	64	0.94
1184290--1184350	20	3.0	20	81	18	72	39	0	3	57	1.15
1184315--1184389	30	2.6	28	80	12	89	38	0	6	54	1.27
1184330--1184391	30	2.1	30	87	6	90	41	0	6	51	1.27
1190227--1190270	22	2.0	23	86	4	63	29	6	25	38	1.81
1190196--1190310	55	2.1	55	83	6	144	37	7	24	30	1.84
1190142--1190387	125	2.0	125	86	2	341	37	8	23	29	1.85
1190419--1190529	38	2.9	37	76	9	100	33	9	18	38	1.83
1197905--1197942	16	2.3	17	81	9	51	63	2	2	31	1.22
1197907--1197967	13	4.8	12	74	11	50	60	1	1	36	1.16
1198098--1198146	20	2.5	20	86	0	62	32	16	22	28	1.95
1198217--1198264	20	2.4	20	82	0	51	31	14	22	31	1.94
1198084--1198487	119	3.4	118	93	1	639	34	19	15	31	1.92
1198336--1198374	20	2.0	20	84	0	51	28	23	23	25	1.99
1201412--1201504	12	7.1	13	73	19	68	2	19	0	78	0.85
1201438--1201508	8	8.4	8	73	20	56	1	16	0	81	0.76
1201410--1201501	25	3.6	25	74	20	75	2	19	0	78	0.86
1201449--1201501	7	7.7	7	75	12	56	1	15	0	83	0.74
1201438--1201508	20	3.6	19	80	14	74	1	16	0	81	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1201408--1201509	26	3.9	26	72	21	88	2	19	0	77	0.90
1202478--1202784	154	2.0	153	95	4	557	30	19	15	33	1.93
1206652--1206829	88	2.0	87	98	1	347	37	8	7	45	1.65
1208273--1208329	11	5.1	11	78	6	53	59	3	1	35	1.25
1208273--1208336	12	5.0	13	76	16	53	59	3	1	35	1.23
1208273--1208336	11	5.2	12	78	10	51	59	3	1	35	1.23
1210034--1210090	21	2.7	21	91	0	96	24	26	24	24	2.00
1216360--1216791	215	2.0	215	97	0	810	24	26	19	29	1.99
1219214--1219253	15	2.5	17	76	19	50	45	5	2	47	1.38
1219311--1219340	3	10.0	3	100	0	60	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18