genome.fa.s7867.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007867.1 Hibiscus syriacus cultivar Beakdansim tig00110239_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3477501

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  15  of  18  ( 2128 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2736838--2736894	21	2.8	21	84	10	73	70	0	1	28	0.98
2736838--2736895	25	2.3	25	85	11	75	70	0	1	27	0.97
2736905--2737038	37	3.6	37	91	2	207	47	8	2	41	1.45
2736916--2737072	37	4.2	38	88	4	194	46	6	2	44	1.42
2738255--2738313	17	3.4	17	72	21	59	18	16	5	59	1.55
2741805--2741890	43	2.0	43	83	0	109	41	13	23	20	1.88
2743376--2743806	37	12.3	37	75	16	375	47	1	7	43	1.41
2743376--2743686	39	8.7	39	75	18	277	46	1	8	44	1.42
2743441--2743712	26	10.5	26	68	16	111	46	1	8	43	1.43
2743402--2743800	65	5.8	64	72	18	263	47	1	7	43	1.42
2743545--2743607	26	2.3	28	89	10	112	47	0	7	44	1.32
2743552--2743749	63	3.1	62	77	15	183	47	1	7	43	1.39
2743700--2743760	11	5.2	11	73	21	52	47	1	6	44	1.39
2743620--2743749	63	2.1	63	94	0	206	46	0	6	45	1.35
2743810--2743867	20	2.9	19	85	12	64	22	1	1	74	1.01
2743823--2743868	15	3.1	15	76	17	51	19	2	0	78	0.86
2757950--2758161	35	5.9	36	88	3	295	45	17	18	17	1.86
2757954--2758157	71	2.8	71	87	7	279	45	17	19	18	1.86
2758197--2759041	423	2.0	423	97	0	1591	32	21	15	31	1.94
2764116--2764282	45	3.7	44	71	10	115	23	21	14	39	1.91
2764116--2764290	89	2.0	90	89	1	271	23	20	15	40	1.90
2764557--2764597	18	2.3	18	80	15	50	34	9	17	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2765803--2765909	42	2.5	42	90	0	160	24	26	19	29	1.98
2770974--2770998	12	2.1	12	100	0	50	48	16	0	36	1.46
2776066--2776110	11	4.2	11	91	2	74	75	4	0	20	0.97
2776067--2776110	22	2.0	22	100	0	88	77	4	0	18	0.94
2781933--2781973	16	2.6	16	88	3	57	36	12	21	29	1.90
2788518--2788578	9	6.8	9	76	14	54	77	0	19	3	0.91
2788486--2788590	36	2.9	36	81	6	117	77	1	19	1	0.96
2788486--2788588	24	4.3	24	74	20	74	77	1	18	1	0.95
2790537--2790648	54	2.1	54	86	3	154	27	8	25	38	1.85
2791986--2792378	135	2.9	135	84	2	479	36	16	18	29	1.92
2795178--2795267	39	2.3	39	96	0	162	40	23	8	27	1.84
2798957--2798994	16	2.3	17	81	9	51	60	0	0	39	0.97
2804774--2804929	60	2.6	60	78	11	149	41	16	12	30	1.84
2807853--2807941	26	3.4	25	75	20	74	40	2	10	47	1.50
2807892--2807946	26	2.0	27	86	6	76	36	1	10	50	1.48
2807879--2807941	25	2.5	24	78	14	74	41	1	9	47	1.45
2819052--2819146	32	3.0	32	79	0	109	24	24	30	21	1.99
2821825--2821855	12	2.6	12	94	0	53	22	3	9	64	1.38
2833902--2833956	27	2.0	26	83	13	67	41	0	7	50	1.30
2837499--2837582	32	2.6	32	88	0	114	20	22	33	23	1.97
2857117--2857329	104	2.0	106	98	1	412	42	15	11	31	1.82
2868580--2868647	29	2.3	29	100	0	136	23	26	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2872275--2872605	163	2.0	166	98	1	641	36	6	22	34	1.79
2873795--2873838	22	2.0	23	81	4	54	50	2	15	31	1.57
2874893--2874954	18	3.5	18	82	2	72	24	22	14	38	1.91
2878107--2878156	25	2.0	25	92	0	82	46	12	22	20	1.83
2878630--2878760	46	2.8	46	96	0	235	19	22	30	27	1.98
2878655--2878711	28	2.0	28	90	6	89	17	22	31	28	1.97
2878637--2878718	18	5.0	18	70	27	83	20	21	31	25	1.98
2882648--2882714	28	2.4	28	84	0	89	23	20	22	32	1.98
2890272--2890316	19	2.4	19	92	0	72	48	20	20	11	1.79
2891007--2891198	32	6.2	32	73	16	138	33	21	9	34	1.86
2892282--2892377	20	4.8	20	90	0	138	34	11	21	32	1.89
2892282--2892377	40	2.4	40	92	0	156	34	11	21	32	1.89
2903961--2904033	2	37.0	2	91	2	121	46	0	2	50	1.15
2904021--2904293	37	7.5	35	80	11	291	45	2	5	46	1.38
2904021--2904293	36	7.5	36	80	10	261	45	2	5	46	1.38
2904348--2904406	29	2.0	29	83	6	75	47	5	3	44	1.42
2904370--2904445	36	2.1	36	90	4	118	50	1	1	47	1.18
2904370--2904462	36	2.5	36	86	6	107	47	1	4	47	1.29
2904461--2904529	13	5.5	13	67	10	54	20	4	0	75	0.97
2904464--2904506	23	1.9	22	95	4	77	16	4	0	79	0.90
2904466--2904534	31	2.3	30	83	14	81	20	4	0	75	0.97
2906037--2906069	12	2.8	12	86	4	50	27	6	6	60	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2909476--2909706	86	2.7	86	84	5	283	29	19	19	31	1.96
2910786--2911256	84	5.6	84	80	3	527	31	24	18	24	1.97
2910786--2911260	168	2.8	168	86	2	632	32	24	18	24	1.97
2911200--2911318	63	1.9	62	92	1	202	32	23	21	22	1.98
2911108--2911406	146	2.0	146	88	1	447	31	24	21	23	1.98
2911261--2912054	84	9.5	84	78	4	667	31	22	20	25	1.98
2911033--2911736	249	3.0	231	76	11	584	31	24	19	24	1.98
2911254--2912054	165	4.8	164	80	5	806	31	22	20	25	1.98
2911261--2912051	249	3.2	244	76	7	698	31	22	20	25	1.98
2911254--2912057	334	2.4	333	83	2	936	31	23	20	25	1.98
2912618--2913154	37	14.5	36	74	16	350	46	4	5	44	1.45
2912618--2913063	74	5.9	75	83	7	519	46	4	5	43	1.47
2912618--2913075	153	3.0	151	84	8	583	46	4	5	43	1.48
2913042--2913102	29	2.1	29	81	0	68	47	3	4	44	1.41
2913167--2913241	11	6.4	11	73	23	55	20	4	1	74	1.05
2914538--2914587	3	16.7	3	100	0	100	32	0	0	68	0.90
2914756--2914788	12	2.8	12	86	4	50	27	6	6	60	1.44
2920920--2920967	24	2.0	24	95	0	87	35	37	10	16	1.83
2932139--2932186	21	2.3	21	92	0	78	25	25	20	29	1.99
2933456--2933577	25	5.0	25	77	9	112	31	22	22	22	1.98
2939914--2940047	46	2.9	46	92	1	207	24	22	10	42	1.85
2939972--2940071	20	4.7	20	76	13	110	21	27	12	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2939952--2940031	26	3.3	25	71	20	80	23	22	10	43	1.83
2940475--2940679	95	2.2	94	81	8	231	26	24	14	35	1.93
2946725--2946921	26	8.6	20	73	18	88	23	24	8	43	1.81
2946698--2946829	46	2.9	46	90	2	203	26	24	7	41	1.81
2946745--2946901	72	2.2	72	95	0	278	22	22	9	45	1.81
2946816--2946927	46	2.4	46	93	0	197	22	22	9	45	1.81
2946711--2946927	118	1.8	118	91	0	362	24	22	8	44	1.81
2947314--2947382	22	3.1	22	97	0	129	28	15	14	40	1.87
2947373--2947561	95	2.0	95	88	2	281	24	24	15	35	1.94
2951749--2951834	29	2.9	29	73	14	79	38	0	1	60	1.04
2951772--2951837	18	3.6	16	74	22	51	37	0	1	60	1.06
2951762--2951847	13	6.5	13	75	17	61	34	0	2	62	1.08
2951760--2951853	17	5.4	16	72	19	73	35	0	2	62	1.07
2952309--2952355	24	2.0	24	91	0	76	57	14	14	12	1.66
2953718--2953759	3	13.7	3	85	5	57	35	0	0	64	0.94
2955334--2955360	4	6.8	4	100	0	54	74	0	0	25	0.83
2961263--2961293	14	2.2	14	100	0	62	41	6	25	25	1.79
2966977--2967040	19	3.3	19	78	8	67	79	0	17	3	0.85
2966988--2967012	11	2.3	11	100	0	50	84	0	8	8	0.79
2966976--2967010	18	1.9	18	88	0	52	77	0	17	5	0.96
2968506--2968567	3	20.7	3	96	0	115	33	0	0	66	0.92
2970794--2970913	42	2.9	42	96	0	222	15	20	19	45	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2971102--2971162	22	2.8	23	82	7	65	47	0	0	52	1.00
2971447--2971516	20	3.5	20	92	0	122	35	14	8	41	1.76
2971499--2971580	15	5.5	15	85	2	112	35	18	7	39	1.78
2971499--2971580	30	2.8	30	92	1	130	35	18	7	39	1.78
2971499--2971585	45	2.0	44	90	2	138	33	18	6	41	1.77
2971863--2971906	20	2.2	20	83	0	52	43	2	4	50	1.35
2976610--2976677	30	2.3	30	92	2	111	33	7	2	55	1.42
2976904--2976954	19	2.6	19	87	3	66	35	33	11	19	1.88
2976905--2977023	20	5.9	21	74	11	88	30	26	13	30	1.94
2976908--2977023	40	2.9	40	78	7	119	28	26	13	31	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18