genome.fa.s7909.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007909.1 Hibiscus syriacus cultivar Beakdansim tig00110303_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3382237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  10  of  17  ( 1978 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1775200--1775322	42	2.9	42	87	2	176	24	21	35	18	1.95
1775600--1775649	21	2.4	21	82	0	64	30	28	20	22	1.98
1775615--1775774	63	2.5	61	79	6	167	31	33	13	21	1.92
1775726--1775775	21	2.4	21	86	0	73	34	30	16	20	1.94
1777511--1777549	20	1.9	21	89	5	62	15	17	15	51	1.77
1777888--1777945	22	2.6	22	83	0	80	17	15	44	22	1.86
1778098--1778309	20	10.6	20	80	11	149	19	16	23	40	1.91
1778137--1778264	60	2.1	61	94	1	222	20	16	24	39	1.92
1778098--1778264	60	2.8	60	84	9	189	19	16	23	40	1.90
1778240--1778350	40	2.8	41	79	5	93	21	17	27	34	1.95
1781208--1781269	32	1.9	32	90	6	99	33	14	3	48	1.60
1783103--1783176	21	3.6	21	82	8	89	31	22	25	20	1.98
1783994--1784061	21	3.1	21	79	8	73	36	25	20	17	1.94
1785206--1785254	19	2.4	20	80	13	55	38	22	2	36	1.66
1787865--1787929	23	2.8	23	77	9	78	29	24	24	21	1.99
1788138--1788206	30	2.3	30	92	0	111	34	23	4	37	1.75
1794606--1794674	23	3.0	23	89	0	102	26	26	27	20	1.99
1794884--1794952	30	2.3	30	92	0	111	33	23	4	39	1.74
1798867--1798899	16	2.1	16	100	0	66	36	24	18	21	1.95
1800517--1800575	31	1.9	31	86	6	84	42	13	18	25	1.87
1802737--1802845	31	3.5	31	81	5	103	38	11	22	27	1.89
1805378--1805435	27	2.1	28	84	9	75	48	15	15	20	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1805518--1805563	12	3.6	12	81	16	56	45	17	19	17	1.85
1805524--1805564	12	3.1	13	80	19	57	46	14	17	21	1.84
1807976--1808015	21	1.9	21	94	0	71	30	15	7	47	1.72
1808010--1808108	33	3.0	33	94	1	164	32	7	15	45	1.73
1808094--1808148	13	4.2	13	75	13	58	34	3	12	49	1.59
1808163--1808203	14	2.9	14	92	0	55	7	24	9	58	1.55
1808173--1808210	14	3.1	12	88	11	51	7	26	7	57	1.54
1808358--1808410	21	2.5	21	100	0	106	18	20	28	32	1.97
1808580--1808635	15	3.6	15	79	9	67	32	12	12	42	1.80
1808599--1808632	18	1.9	18	94	5	61	38	11	11	38	1.79
1813003--1813054	21	2.5	21	81	3	61	38	19	25	17	1.93
1813043--1813157	20	5.7	19	78	11	104	35	23	17	23	1.95
1813063--1813157	41	2.3	41	85	0	136	36	23	16	23	1.94
1813325--1813368	22	2.0	22	95	0	79	20	45	15	18	1.85
1813632--1813690	20	3.0	20	87	0	73	16	18	22	42	1.89
1813827--1813881	25	2.2	24	78	15	58	20	9	18	52	1.71
1815008--1815049	18	2.3	18	87	0	66	26	47	11	14	1.78
1815542--1815651	19	6.1	19	77	15	72	42	20	21	14	1.88
1815542--1815597	20	2.8	20	81	2	69	39	21	23	16	1.92
1815570--1815651	19	4.6	19	76	17	104	45	20	20	13	1.85
1815664--1815753	14	5.8	14	72	21	72	12	16	22	48	1.79
1815665--1815769	33	3.2	33	97	1	194	13	18	20	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1815754--1815809	20	2.8	19	84	7	67	16	23	23	37	1.93
1817680--1817715	14	2.6	14	90	0	54	30	0	22	47	1.52
1817842--1817895	14	3.5	14	77	22	63	48	20	20	11	1.80
1817852--1817888	19	1.9	19	88	0	56	51	16	21	10	1.74
1817926--1818011	20	4.3	20	75	7	95	16	20	23	39	1.92
1818224--1818273	20	2.5	20	76	0	64	22	18	20	40	1.92
1818304--1818351	20	2.3	20	85	3	60	22	20	16	39	1.92
1818548--1818581	12	2.9	12	86	4	52	17	41	5	35	1.74
1819136--1819189	24	2.2	24	90	0	81	22	16	20	40	1.91
1819364--1819388	12	2.1	12	100	0	50	72	0	28	0	0.86
1821660--1821786	33	3.8	33	86	8	195	43	19	22	14	1.88
1821661--1821785	66	1.9	66	98	0	241	43	20	21	15	1.88
1821949--1821985	14	2.6	14	91	0	65	45	24	0	29	1.53
1823338--1823510	42	4.1	41	74	8	152	21	18	36	23	1.95
1823338--1823404	21	3.2	21	68	4	55	19	20	35	23	1.95
1823368--1823543	84	2.1	84	98	0	343	23	17	37	22	1.94
1823393--1823540	42	3.5	42	79	0	179	23	16	37	22	1.93
1823762--1823946	91	2.0	91	90	6	293	47	18	12	22	1.82
1825633--1825693	20	3.1	19	79	9	68	44	18	24	13	1.85
1825658--1825743	33	2.6	33	90	1	136	40	20	25	12	1.88
1825755--1825799	19	2.4	19	88	0	63	11	15	24	48	1.77
1826352--1826404	20	2.7	20	90	0	79	26	18	28	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1831876--1832519	325	2.0	325	98	0	1243	35	10	16	37	1.83
1834537--1834619	22	3.8	22	72	13	73	25	27	19	27	1.99
1838864--1838895	9	3.8	9	84	16	50	37	6	31	25	1.81
1838864--1838896	16	2.1	16	100	0	66	39	6	30	24	1.79
1838897--1838986	33	2.7	34	84	3	137	24	14	23	37	1.92
1842520--1842567	9	5.8	9	76	18	59	35	6	31	27	1.82
1842517--1842568	16	3.2	16	94	0	95	34	5	30	28	1.81
1842569--1842658	33	2.7	34	85	3	137	22	15	23	38	1.92
1844104--1844187	41	2.1	41	90	2	116	51	4	7	36	1.51
1845065--1845115	19	2.6	19	84	3	66	33	29	13	23	1.93
1845174--1845212	20	2.0	20	89	0	60	43	15	17	23	1.87
1845222--1845272	20	2.5	20	90	0	75	41	19	15	23	1.90
1845213--1845296	20	4.2	20	79	0	69	47	21	10	20	1.80
1845284--1845336	19	2.7	19	88	5	61	37	22	9	30	1.86
1845300--1845336	19	1.9	19	100	0	74	37	21	10	29	1.88
1845300--1845344	19	2.3	19	92	3	72	37	20	11	31	1.87
1846076--1846109	12	2.8	12	90	0	50	55	29	0	14	1.40
1846235--1846288	24	2.2	24	93	0	90	20	18	20	40	1.91
1848528--1848562	6	5.8	6	86	0	52	60	20	2	17	1.49
1848529--1848569	18	2.3	18	95	0	73	56	24	2	17	1.53
1848855--1848892	20	1.9	20	94	0	67	42	23	15	18	1.89
1849073--1849130	25	2.3	25	96	0	107	27	8	20	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1849720--1849857	64	2.2	63	88	5	201	51	17	0	30	1.51
1851211--1851328	21	5.6	21	71	7	87	19	18	36	25	1.94
1851231--1851333	42	2.5	42	76	9	111	21	18	34	25	1.96
1851729--1851778	21	2.4	21	89	0	82	34	32	16	18	1.92
1853508--1853550	21	2.1	21	87	8	63	11	18	23	46	1.82
1853968--1854092	20	6.2	20	76	10	130	20	19	21	38	1.94
1854116--1854171	20	2.8	20	69	12	53	30	14	23	32	1.94
1855750--1855784	18	1.9	18	88	0	52	42	5	8	42	1.59
1856464--1856496	17	1.9	17	100	0	66	6	27	30	36	1.81
1857190--1857245	21	2.7	21	85	0	76	8	32	35	23	1.86
1858857--1858885	6	4.8	6	100	0	58	0	31	0	68	0.89
1858938--1859329	144	2.7	144	79	6	409	28	39	1	30	1.67
1858984--1859336	72	4.9	72	82	3	345	27	39	1	31	1.67
1864308--1864336	2	14.5	2	100	0	58	48	0	0	51	1.00
1873027--1873162	38	3.6	38	82	7	163	42	2	9	44	1.52
1873146--1873184	2	19.5	2	100	0	78	51	0	0	48	1.00
1873172--1873337	37	4.5	36	81	8	174	42	3	8	45	1.52
1873172--1873337	38	4.6	36	80	8	167	42	3	8	45	1.52
1882995--1883039	20	2.2	20	88	0	63	26	15	6	51	1.68
1882863--1883234	186	2.0	185	93	0	636	30	13	7	47	1.71
1883181--1883224	20	2.2	20	87	0	61	27	15	4	52	1.63
1893813--1894042	126	1.8	125	80	9	279	25	15	27	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1911517--1911556	2	20.5	2	94	5	73	50	0	0	50	1.00
1913801--1913884	32	2.6	32	86	3	98	30	20	17	30	1.96
1919725--1919786	32	1.9	32	90	0	97	59	8	12	19	1.58
1927348--1927385	3	12.7	3	100	0	76	65	0	0	34	0.93
1930708--1930734	7	3.9	7	100	0	54	88	0	11	0	0.50
1930688--1930776	32	2.9	30	78	8	83	76	3	5	14	1.10
1932366--1932542	84	2.1	84	87	0	246	23	19	27	29	1.98
1932530--1932657	33	3.9	33	89	5	188	31	9	20	39	1.84
1932530--1932653	67	1.9	65	88	6	187	29	8	20	40	1.83
1932725--1932789	21	3.4	21	64	24	61	43	13	20	23	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17