genome.fa.s7909.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007909.1 Hibiscus syriacus cultivar Beakdansim tig00110303_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3382237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  2  of  17  ( 1978 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152830--152868	19	2.1	19	85	0	51	25	12	25	35	1.92
156764--156810	21	2.2	22	84	3	60	29	0	4	65	1.11
159440--159468	14	2.1	14	100	0	58	27	6	24	41	1.80
160755--160782	2	14.0	2	100	0	56	50	0	0	50	1.00
166268--166308	22	1.9	22	90	5	66	31	0	0	68	0.90
166736--166781	14	3.3	14	75	0	56	15	4	13	67	1.38
170991--171185	20	9.6	21	71	6	89	34	24	14	26	1.94
171027--171140	41	2.8	41	94	0	201	33	20	16	29	1.95
171171--171225	20	2.8	20	91	0	92	25	25	12	36	1.91
171158--171264	20	5.4	19	76	15	69	28	22	13	35	1.92
172186--172245	24	2.5	24	78	10	77	26	18	16	38	1.92
174974--175023	25	2.0	25	92	0	82	28	6	22	44	1.76
175409--175445	18	2.1	18	89	0	56	32	5	10	51	1.60
175401--175453	24	2.2	24	86	0	70	35	3	13	47	1.61
176496--176558	31	2.0	31	84	6	83	38	23	17	20	1.93
177215--177371	64	2.5	63	82	4	163	28	17	19	34	1.95
181251--181407	64	2.5	64	82	4	165	27	17	20	34	1.95
185288--185430	64	2.2	64	80	4	155	30	16	18	34	1.93
186756--186793	18	2.1	18	95	0	67	52	28	2	15	1.56
187295--187331	14	2.6	14	91	0	65	45	21	0	32	1.52
187231--187423	78	2.5	78	87	5	277	51	17	2	29	1.57
190914--190953	20	2.0	20	85	0	53	15	12	22	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
191289--191333	22	2.0	22	87	8	65	20	13	44	22	1.85
191498--191536	20	2.0	20	94	0	69	17	7	25	48	1.74
192548--192586	20	1.9	20	84	5	51	41	7	2	48	1.45
196653--196714	3	21.7	3	78	15	69	35	0	0	64	0.94
196653--196713	32	1.9	32	86	0	86	34	0	0	65	0.93
197732--197771	13	3.0	13	85	7	53	35	2	0	62	1.09
197694--197766	37	1.9	38	83	8	96	31	5	2	60	1.34
199095--199246	75	2.0	76	93	3	263	21	17	19	42	1.90
207798--207868	35	2.0	35	100	0	142	52	16	16	14	1.76
208539--208864	139	2.4	139	91	2	532	21	19	23	35	1.95
208866--208912	20	2.4	20	79	13	53	34	0	23	42	1.54
209876--209948	21	3.5	21	77	7	76	16	23	34	26	1.95
209924--210029	42	2.5	42	83	3	133	22	19	33	23	1.97
210759--210797	20	2.0	20	89	0	60	30	33	15	20	1.94
213063--213095	16	2.1	16	100	0	66	36	12	0	51	1.39
218474--218527	20	2.7	20	100	0	108	33	29	20	16	1.95
219371--219405	17	2.1	17	89	10	54	51	8	0	40	1.33
223784--223855	29	2.5	29	86	4	101	19	4	31	44	1.70
224618--224658	21	2.0	21	100	0	82	36	0	0	63	0.95
224618--224671	21	2.7	20	86	11	58	35	1	0	62	1.06
226116--226176	24	2.5	24	100	0	122	57	6	4	31	1.46
228129--228224	32	3.0	31	76	8	86	22	11	28	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
228453--228516	30	2.1	30	91	0	101	31	3	10	54	1.51
231279--231393	33	3.5	33	83	1	124	19	12	25	43	1.85
241019--241067	23	2.1	23	85	7	64	57	12	2	28	1.46
249090--249138	23	2.1	23	85	7	64	57	14	2	26	1.48
250803--250967	76	2.2	75	87	3	242	30	2	10	56	1.47
250925--250987	19	3.2	19	75	4	54	31	0	12	55	1.37
257290--257321	15	2.1	15	94	0	55	9	6	6	78	1.10
259175--259339	76	2.2	75	85	5	226	29	2	10	56	1.46
259963--260010	21	2.3	20	89	3	69	18	4	0	77	0.93
260040--260083	9	5.0	9	83	5	54	25	0	0	75	0.81
262394--262467	30	2.4	31	86	8	107	29	5	6	58	1.47
262686--262727	22	1.9	22	95	0	75	47	4	21	26	1.70
263365--263389	12	2.1	12	100	0	50	32	8	8	52	1.60
264821--264873	22	2.4	21	79	14	63	71	5	0	22	1.06
275048--275072	5	5.0	5	100	0	50	0	40	0	60	0.97
277074--277176	51	2.0	51	100	0	206	31	11	22	34	1.90
279877--279953	32	2.5	31	78	6	84	40	3	1	54	1.27
285193--285223	2	15.5	2	100	0	62	51	0	0	48	1.00
285271--285339	35	2.0	35	88	5	106	42	8	13	36	1.75
285446--285488	20	2.2	20	91	0	68	48	13	23	13	1.79
288461--288508	15	3.4	14	83	8	62	50	0	0	50	1.00
288494--288565	19	3.5	19	71	23	56	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
297537--297593	16	3.6	16	90	2	89	33	21	8	36	1.84
298894--298968	38	1.9	39	81	2	89	21	41	14	22	1.89
299634--299659	5	5.2	5	100	0	52	23	0	0	76	0.78
299949--299982	11	3.0	11	91	4	50	26	5	0	67	1.13
300026--300268	132	1.9	129	84	5	326	37	6	7	49	1.56
302036--302081	19	2.4	19	100	0	92	32	21	32	13	1.92
303132--303208	26	3.0	26	81	9	68	22	12	5	59	1.53
303156--303208	25	2.1	25	89	6	81	22	11	1	64	1.36
305313--305456	72	2.0	72	94	0	252	30	18	15	35	1.92
307614--307767	75	2.1	75	85	2	202	33	16	20	29	1.94
309110--309169	22	2.7	22	84	0	84	36	13	13	36	1.84
309823--310009	76	2.5	76	91	0	293	25	20	19	35	1.96
309952--310200	45	5.5	45	88	0	336	26	21	20	30	1.98
310224--310353	45	2.9	45	91	0	206	28	20	21	29	1.98
311672--311707	2	18.0	2	94	0	63	52	0	0	47	1.00
311995--312045	21	2.4	22	96	3	95	58	3	7	29	1.44
319129--319186	29	2.0	29	83	6	73	25	18	6	48	1.73
319427--319493	15	4.3	15	66	26	50	73	5	0	20	1.04
319410--319493	24	3.5	23	74	11	80	72	4	0	22	1.03
319402--319621	47	5.0	47	82	10	234	67	7	3	22	1.30
319413--319493	12	6.8	12	70	13	51	71	4	0	23	1.05
319442--319611	84	2.0	81	81	9	191	65	8	4	21	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322250--322324	31	2.4	31	72	18	75	58	1	1	38	1.15
323075--323135	28	2.2	28	85	5	79	19	37	8	34	1.82
337700--337755	22	2.5	22	88	0	94	41	35	8	14	1.77
340602--340642	16	2.6	16	88	3	57	36	12	19	31	1.89
352698--352726	2	14.5	2	100	0	58	48	0	0	51	1.00
353174--353233	2	32.5	2	75	21	60	46	3	0	50	1.18
355431--355506	35	2.1	36	87	2	109	31	0	23	44	1.54
356629--356689	30	2.0	31	90	9	99	50	4	19	24	1.67
359055--359137	3	28.0	3	78	11	91	33	1	2	62	1.16
359371--359408	15	2.5	15	100	0	76	0	50	28	21	1.49
360520--360581	29	2.2	28	85	8	81	29	4	3	62	1.31
360589--360627	2	19.5	2	94	0	69	53	0	0	46	1.00
361458--361528	30	2.6	26	77	14	72	30	4	2	61	1.29
362864--362950	43	2.0	44	86	6	124	28	11	24	35	1.90
363027--363077	27	1.9	26	84	4	66	17	13	13	54	1.70
370205--370291	22	4.0	22	82	4	86	32	13	14	39	1.86
370793--371105	120	2.6	122	89	4	490	40	15	19	24	1.90
371473--371540	3	23.0	3	77	14	70	33	1	1	63	1.13
371477--371550	17	4.4	17	80	10	71	36	1	1	60	1.13
371708--371748	21	2.0	21	100	0	82	24	31	24	19	1.98
372928--372987	14	4.4	14	78	15	63	28	5	3	63	1.31
373363--373402	2	21.5	2	85	14	59	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374733--374800	31	2.2	31	82	10	77	33	13	16	36	1.87
376937--377019	42	2.0	42	90	0	130	24	21	22	31	1.98
377893--377960	19	3.4	19	69	15	64	30	22	22	25	1.99
377902--377973	21	3.4	21	70	14	76	33	23	22	20	1.97
377898--377987	42	2.1	42	95	0	171	32	24	21	22	1.98
379652--379856	112	1.8	112	87	4	306	10	24	5	59	1.51
379652--379887	112	2.1	112	83	6	291	10	25	6	56	1.57
380202--380253	3	17.3	3	81	15	54	67	3	0	28	1.08
380654--380679	5	5.2	5	100	0	52	23	57	19	0	1.40
381033--381094	23	2.7	22	80	5	61	45	1	1	51	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17