genome.fa.s7909.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007909.1 Hibiscus syriacus cultivar Beakdansim tig00110303_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3382237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  4  of  17  ( 1978 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
596805--596839	12	2.8	13	91	8	63	48	8	5	37	1.58
603235--603317	3	27.7	3	95	0	148	34	0	1	63	1.02
620212--620327	21	5.6	21	69	10	60	32	27	18	21	1.96
620315--620488	20	8.6	20	80	6	163	36	27	18	18	1.94
620353--620487	40	3.3	40	87	5	200	33	28	18	20	1.96
620315--620487	60	2.9	60	78	10	192	35	27	18	18	1.94
620867--620937	33	2.2	33	94	0	124	11	23	16	47	1.79
621017--621123	21	5.6	20	71	17	93	47	18	20	13	1.81
621078--621134	14	3.7	14	72	20	51	45	22	22	8	1.80
621071--621139	33	2.1	33	97	0	129	49	20	21	8	1.76
621076--621150	33	2.3	33	92	0	123	48	24	20	8	1.76
622900--623215	93	3.4	93	98	0	614	22	13	18	45	1.85
623313--623380	33	2.0	34	88	2	102	45	23	19	11	1.83
623500--623535	14	2.6	14	95	0	63	33	0	22	44	1.53
623626--623713	19	4.8	19	82	14	123	47	15	22	13	1.81
623626--623732	53	2.0	53	98	1	207	45	16	24	13	1.83
623722--623945	19	12.7	18	75	20	192	13	22	17	45	1.83
623746--623978	34	6.8	34	77	14	237	12	22	18	45	1.83
623728--623915	53	3.5	53	97	2	351	12	23	17	46	1.82
626243--626267	12	2.1	12	100	0	50	0	28	0	72	0.86
626442--626488	24	2.0	24	87	8	69	38	21	14	25	1.92
627181--627409	20	11.4	20	84	1	226	19	17	25	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
627377--627475	21	4.8	20	76	6	81	22	19	21	37	1.94
627728--627799	17	4.1	17	74	15	51	70	1	8	19	1.20
628021--628100	2	39.5	2	81	7	81	55	0	5	40	1.22
628098--628154	3	18.3	3	78	10	53	63	1	1	33	1.15
637386--637421	16	2.2	17	95	5	65	44	22	0	33	1.53
643120--643243	25	5.0	25	97	1	223	31	15	20	33	1.93
643338--643386	11	4.3	11	78	16	55	67	2	4	26	1.19
643631--643800	90	1.9	89	91	3	279	24	18	30	27	1.98
643631--643764	46	3.0	46	66	10	123	23	19	29	27	1.98
643648--643790	46	3.2	44	70	10	130	24	18	29	27	1.98
643664--643801	43	3.1	44	71	11	120	24	18	28	28	1.98
658025--658053	14	2.0	15	93	6	51	0	10	0	89	0.48
658408--658531	25	5.0	25	97	1	223	31	15	20	33	1.93
658626--658674	11	4.3	11	78	16	55	67	2	4	26	1.19
660168--660222	21	2.7	21	77	2	58	34	20	21	23	1.97
664117--664160	21	2.1	21	91	0	70	40	11	31	15	1.83
664194--664259	33	2.0	33	87	0	96	31	0	42	25	1.55
665454--671841	4	1615.0	4	97	2	12263	24	0	25	49	1.50
672874--672926	21	2.5	21	96	0	97	39	13	15	32	1.85
672895--674062	201	5.8	201	93	0	1960	36	14	17	31	1.89
672700--674062	402	3.3	402	91	2	2172	36	14	17	31	1.90
675526--675560	12	2.9	12	91	0	52	40	2	31	25	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
677012--677121	51	2.1	53	79	12	122	37	18	20	23	1.94
680065--680217	73	2.1	73	83	10	190	33	16	20	28	1.95
680555--680682	64	2.0	64	96	0	238	32	14	11	40	1.83
683975--684020	2	23.0	2	100	0	92	50	0	0	50	1.00
683974--684047	6	11.6	7	84	8	56	44	6	2	45	1.44
688487--688582	28	3.3	28	76	11	95	35	12	13	38	1.83
692260--692303	12	3.8	12	82	11	65	11	22	47	18	1.80
692241--692302	22	2.7	22	92	5	97	12	24	45	17	1.84
692248--692285	17	2.2	17	100	0	76	10	23	47	18	1.79
694102--694126	3	8.3	3	100	0	50	0	32	0	68	0.90
699853--699884	2	16.5	2	93	6	57	50	0	0	50	1.00
700373--700441	5	13.6	5	72	14	52	72	1	5	20	1.13
700353--700428	41	1.9	39	84	7	100	71	2	5	21	1.19
700527--700587	18	3.3	17	77	22	61	72	1	0	26	0.94
700711--700743	2	16.5	2	100	0	66	51	0	0	48	1.00
700799--700845	8	5.8	8	76	14	51	61	0	2	36	1.08
701937--702275	167	2.0	168	84	2	448	23	19	23	33	1.97
701946--702282	83	4.0	83	83	3	390	23	19	23	32	1.97
702646--703046	106	3.8	106	89	0	622	21	17	24	35	1.95
702474--703047	212	2.8	205	90	4	907	22	17	25	34	1.96
704195--704230	18	2.0	18	94	0	63	41	33	8	16	1.78
704666--704709	22	2.0	22	90	0	70	27	13	20	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
705308--705368	13	4.9	12	78	6	59	1	9	6	81	0.92
705297--705377	31	2.5	33	75	20	80	1	14	7	76	1.06
708603--708663	18	3.3	17	77	22	61	72	1	0	26	0.94
708787--708853	2	33.5	2	100	0	134	50	0	0	49	1.00
708914--708938	2	12.5	2	100	0	50	52	0	0	48	1.00
710045--710133	33	2.7	33	94	0	151	39	17	13	29	1.88
710326--710351	2	13.0	2	100	0	52	50	0	50	0	1.00
718456--718579	25	5.0	25	97	1	223	31	15	20	33	1.93
718674--718722	11	4.3	11	78	16	55	67	2	4	26	1.19
718967--719136	90	1.9	89	91	3	279	24	18	30	27	1.98
718967--719100	46	3.0	46	66	10	123	23	19	29	27	1.98
718984--719126	46	3.2	44	70	10	130	24	18	29	27	1.98
719000--719137	43	3.1	44	71	11	120	24	18	28	28	1.98
720246--720270	1	25.0	1	100	0	50	0	0	0	100	0.00
733215--733338	25	5.0	25	97	1	223	31	15	20	33	1.93
733433--733481	11	4.3	11	78	16	55	67	2	4	26	1.19
748145--748196	18	2.9	18	97	0	95	38	0	36	25	1.56
760447--760547	42	2.4	42	90	3	150	27	29	19	22	1.98
770072--770138	23	2.9	23	93	0	107	31	26	23	17	1.97
770654--770713	26	2.3	27	75	8	63	43	10	1	45	1.47
772279--772334	3	17.7	3	78	10	58	57	0	42	0	0.99
772279--772334	16	3.5	16	100	0	112	57	0	42	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
774003--774056	8	6.8	8	86	0	72	27	7	24	40	1.81
773991--774056	12	5.5	12	79	0	60	27	6	25	40	1.79
778009--778873	44	19.6	44	66	10	265	29	22	20	27	1.98
777987--778948	132	7.3	132	89	0	1449	29	22	20	28	1.98
778897--779029	50	2.7	49	90	2	203	30	22	18	29	1.97
779356--779517	36	4.5	37	88	3	215	38	14	22	24	1.92
779382--779511	21	7.0	21	65	28	73	40	14	21	23	1.90
779357--779581	36	6.4	36	79	11	209	38	13	21	26	1.91
779598--779673	37	2.1	37	85	11	104	44	9	14	31	1.76
779680--779783	51	2.1	51	87	5	149	43	13	18	25	1.86
779750--780023	39	7.0	39	94	0	431	35	18	18	27	1.94
780026--780204	76	2.3	76	82	5	200	41	12	15	30	1.85
781560--781614	8	6.9	8	78	15	60	3	10	1	83	0.84
781557--781606	12	4.2	12	82	2	57	2	10	2	86	0.75
781555--781594	20	2.1	19	90	4	62	2	12	0	85	0.71
781530--781626	32	3.0	33	82	8	101	3	15	3	78	1.00
781555--781626	32	2.3	31	90	7	110	4	11	2	81	0.92
783484--783534	23	2.2	23	89	0	84	21	31	11	35	1.90
785663--785745	42	1.9	41	81	13	96	68	3	3	24	1.21
787886--787921	17	2.1	17	90	10	56	47	11	13	27	1.77
789883--789934	2	26.0	2	100	0	104	50	0	0	50	1.00
790772--790908	64	2.2	63	80	6	143	24	23	18	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
794256--794320	23	2.8	23	80	0	85	29	24	27	18	1.98
795067--795175	2	54.5	2	100	0	218	50	49	0	0	1.00
795175--795212	2	19.0	2	100	0	76	50	0	0	50	1.00
796047--796093	19	2.5	19	96	0	85	25	31	17	25	1.97
797707--797795	29	2.9	31	78	10	92	55	5	1	38	1.31
800491--800518	2	14.0	2	100	0	56	50	0	0	50	1.00
810585--810651	32	2.0	35	88	8	104	35	16	2	44	1.63
813495--813658	36	4.6	36	92	0	265	43	14	15	26	1.86
815438--815463	12	2.2	12	100	0	52	53	23	0	23	1.46
833736--833780	19	2.3	19	84	7	54	26	4	6	62	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17