genome.fa.s7909.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007909.1 Hibiscus syriacus cultivar Beakdansim tig00110303_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3382237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  17  of  17  ( 1978 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3261938--3261972	16	2.2	16	89	0	52	25	5	20	48	1.71
3263916--3263949	12	2.7	13	86	9	52	44	8	5	41	1.60
3265210--3265259	5	10.2	5	97	2	93	62	0	0	38	0.96
3266516--3266564	25	2.0	25	92	8	82	38	8	4	48	1.52
3266761--3266928	37	4.6	37	88	5	229	43	8	2	45	1.47
3266761--3266928	73	2.3	73	87	4	243	43	8	2	45	1.47
3266938--3266977	18	2.2	18	86	8	55	60	10	5	25	1.49
3272262--3272299	16	2.4	16	90	0	58	23	13	34	28	1.92
3284256--3284311	28	2.0	28	96	0	103	23	33	3	39	1.72
3285965--3286033	28	2.5	28	83	6	88	40	2	5	50	1.41
3293362--3293445	43	2.0	40	82	11	98	15	10	2	71	1.24
3303795--3303819	11	2.3	11	100	0	50	84	0	16	0	0.63
3304507--3305249	105	7.1	105	93	0	1202	32	24	19	23	1.97
3306651--3306690	20	2.0	20	95	0	71	20	37	37	5	1.74
3308918--3308959	20	2.1	20	90	0	66	40	28	9	21	1.84
3308921--3308961	10	4.1	10	80	0	55	39	24	9	26	1.86
3310045--3310103	26	2.3	26	96	0	109	16	10	28	44	1.81
3310724--3310752	2	15.0	2	92	7	51	48	0	0	51	1.00
3313404--3313623	105	2.1	106	91	1	354	38	13	13	35	1.83
3313435--3313649	105	2.0	105	84	1	279	41	12	12	33	1.81
3313404--3313650	105	2.4	105	86	2	273	39	12	13	34	1.82
3314169--3314210	19	2.2	19	95	0	75	33	23	14	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3314459--3314547	28	3.2	28	95	0	160	55	11	0	33	1.36
3322496--3322521	13	2.0	13	100	0	52	23	30	0	46	1.53
3324762--3324839	21	3.8	20	77	15	70	25	17	33	23	1.96
3324802--3324842	21	2.0	21	100	0	82	24	17	39	19	1.92
3330498--3330635	74	1.9	74	81	6	172	23	21	25	29	1.99
3333748--3333821	36	2.1	36	97	0	139	29	12	18	39	1.87
3333875--3333937	24	2.6	24	100	0	126	41	7	4	46	1.54
3334774--3334818	20	2.2	20	96	0	81	2	17	40	40	1.62
3335068--3335092	5	5.0	5	100	0	50	60	0	40	0	0.97
3335822--3335991	35	4.9	32	75	20	137	27	15	4	52	1.61
3335854--3335931	39	1.9	39	87	7	111	24	15	3	56	1.56
3335816--3335980	74	2.2	75	87	2	251	27	17	3	50	1.62
3336646--3336704	23	2.5	23	94	2	100	23	6	0	69	1.12
3337770--3337826	27	2.1	27	100	0	114	21	7	24	47	1.75
3344801--3344960	66	2.4	66	80	12	175	28	16	11	42	1.84
3345507--3345562	25	2.2	25	100	0	112	26	37	14	21	1.92
3345394--3345701	164	1.9	164	82	4	386	29	29	16	23	1.97
3345532--3345858	139	2.4	139	81	0	366	29	28	17	25	1.97
3347600--3347683	35	2.6	33	79	17	88	26	15	3	54	1.57
3347508--3347667	75	2.1	76	85	5	211	29	15	2	53	1.55
3347794--3347847	4	14.0	4	78	18	53	24	0	1	74	0.92
3347804--3347847	18	2.4	19	92	3	72	22	0	0	77	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3347794--3347847	23	2.3	23	87	6	74	24	0	1	74	0.92
3347794--3347849	15	4.0	14	84	13	71	23	0	1	75	0.90
3351713--3351756	23	2.0	22	82	13	54	40	6	15	36	1.74
3354533--3355063	44	12.2	44	83	4	428	35	22	22	19	1.96
3354621--3355063	44	10.2	43	88	1	582	34	23	22	18	1.96
3354621--3355063	131	3.4	129	87	3	600	34	23	22	18	1.96
3354621--3355063	175	2.5	174	88	2	640	34	23	22	18	1.96
3356340--3356401	27	2.3	27	88	2	88	20	12	22	43	1.86
3356355--3356407	27	2.0	27	96	0	97	18	13	22	45	1.84
3360418--3360447	15	2.0	15	100	0	60	13	26	46	13	1.80
3365386--3365415	15	2.0	15	100	0	60	13	26	46	13	1.80
3376722--3376770	17	2.9	17	81	0	62	36	16	6	40	1.73
3378440--3378483	17	2.6	17	100	0	88	29	6	27	36	1.83
3378429--3378496	17	3.9	18	82	7	61	33	5	22	38	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17

The End!