genome.fa.s7909.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007909.1 Hibiscus syriacus cultivar Beakdansim tig00110303_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3382237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  11  of  17  ( 1978 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1932708--1932812	36	2.9	36	94	0	183	41	14	20	23	1.88
1933191--1933339	65	2.3	63	86	3	208	22	18	25	33	1.96
1933256--1934983	106	16.3	106	93	0	2974	23	18	24	34	1.96
1939997--1940026	13	2.3	13	94	0	51	56	0	3	40	1.16
1939982--1940028	19	2.6	18	81	18	53	59	0	2	38	1.09
1941043--1941394	43	8.2	43	87	2	397	32	18	23	24	1.97
1945073--1945181	41	2.6	41	76	11	107	33	19	19	28	1.96
1945044--1945223	82	2.2	80	83	8	213	32	18	19	28	1.96
1945112--1945223	41	2.8	40	75	11	102	32	19	23	25	1.98
1946324--1946364	9	4.8	9	85	11	59	34	0	43	21	1.53
1946328--1946370	16	2.7	16	96	0	77	34	0	44	20	1.52
1947332--1947399	25	2.6	26	72	6	66	19	13	7	60	1.56
1948713--1948740	9	3.1	9	100	0	56	78	10	0	10	0.96
1952501--1952549	26	1.9	25	91	4	80	28	4	18	48	1.66
1953536--1953580	13	3.5	13	90	6	74	24	44	15	15	1.85
1953592--1953629	2	20.0	2	89	10	62	50	0	0	50	1.00
1954670--1954712	21	2.0	21	81	0	50	30	30	25	13	1.94
1954692--1954843	67	2.2	68	89	1	225	26	28	26	18	1.98
1955321--1955624	149	2.0	149	98	0	590	27	17	20	35	1.94
1955603--1955647	23	2.0	23	82	8	56	17	26	31	24	1.97
1961679--1961721	21	2.0	21	81	0	50	30	30	25	13	1.94
1961701--1961849	67	2.2	66	89	1	217	27	27	26	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1962326--1962629	149	2.0	149	99	0	599	26	17	20	35	1.94
1962608--1962652	23	2.0	23	82	8	56	17	26	31	24	1.97
1963625--1963736	41	2.7	41	95	1	197	15	17	19	47	1.83
1964036--1964088	21	2.5	21	87	0	79	20	24	18	35	1.95
1964078--1964190	20	5.7	20	93	0	190	39	19	19	21	1.92
1964390--1964452	22	2.9	21	88	4	90	26	38	14	20	1.91
1964790--1964859	20	3.5	20	82	1	88	12	14	21	51	1.75
1966755--1966899	20	7.6	20	79	14	155	41	20	17	20	1.91
1966944--1967015	20	3.6	20	86	0	99	25	15	22	37	1.93
1966944--1967030	40	2.2	40	85	0	111	21	16	22	39	1.92
1966942--1967030	20	4.4	20	85	0	97	21	16	23	38	1.93
1967514--1967618	21	5.0	21	74	3	95	20	37	19	22	1.95
1967511--1967621	42	2.6	42	78	5	118	20	37	18	22	1.94
1969004--1969039	14	2.6	14	90	0	54	30	0	22	47	1.52
1969178--1969252	20	3.8	20	92	0	123	50	16	18	14	1.78
1969262--1969357	33	2.8	33	87	3	129	12	21	20	44	1.85
1969329--1969417	20	4.5	19	86	8	124	17	20	25	35	1.95
1971857--1971903	24	2.0	24	91	0	76	36	19	21	23	1.95
1972742--1972813	20	3.6	20	96	3	128	25	18	26	30	1.98
1972742--1972823	20	4.1	20	92	3	121	24	18	25	31	1.97
1972827--1972907	20	4.1	20	98	0	153	20	19	20	38	1.94
1972802--1972910	40	2.7	40	84	4	103	22	19	20	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1973176--1973309	28	4.5	31	75	15	99	49	0	0	49	1.11
1973184--1973227	22	2.0	23	86	4	63	45	0	0	54	0.99
1973197--1973351	58	2.7	59	77	16	153	50	0	1	47	1.14
1973277--1973350	19	3.9	19	73	14	55	52	0	1	45	1.09
1973313--1973350	11	3.5	11	82	10	51	47	0	0	52	1.00
1973345--1973389	23	2.0	23	86	0	63	53	2	2	42	1.25
1973672--1973710	14	2.8	14	88	0	51	33	20	15	30	1.94
1973700--1973738	20	2.0	20	84	0	51	33	17	7	41	1.79
1973712--1973793	30	2.8	30	92	1	130	35	18	7	39	1.78
1973712--1973793	15	5.5	15	85	2	112	35	18	7	39	1.78
1974535--1974584	19	2.9	16	78	16	55	26	16	18	40	1.90
1974637--1974730	23	4.1	23	76	5	100	17	25	25	31	1.97
1974629--1974726	46	2.1	46	88	3	144	18	27	21	32	1.96
1977355--1977419	28	2.5	26	80	9	69	21	10	3	64	1.38
1977872--1978204	87	4.0	82	80	6	335	35	13	19	31	1.90
1977882--1978204	85	3.8	85	81	6	377	34	13	18	32	1.91
1979527--1979910	204	1.9	204	92	1	644	29	19	17	32	1.95
1982571--1982639	18	3.7	18	84	7	93	30	30	21	17	1.96
1989309--1989376	22	3.0	22	91	2	109	26	25	26	22	2.00
1989579--1989648	30	2.3	30	90	0	104	32	22	5	38	1.78
1990014--1990187	67	2.6	67	86	5	217	17	27	27	27	1.97
1996220--1996287	22	3.0	22	93	2	118	26	26	26	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1996490--1996559	30	2.3	30	90	0	104	32	22	5	38	1.78
1996942--1997100	67	2.4	67	86	6	207	18	27	25	28	1.98
1997064--1997121	21	2.8	21	94	0	98	15	29	25	29	1.96
1998258--1998296	15	2.7	15	84	7	55	48	7	10	33	1.66
1998438--1998510	18	3.9	18	77	7	83	31	31	16	20	1.95
2013910--2013936	2	13.5	2	100	0	54	48	0	0	51	1.00
2014129--2014181	22	2.4	22	93	0	97	16	16	28	37	1.91
2014895--2014960	19	3.3	19	72	12	69	42	21	18	18	1.89
2014910--2014981	22	3.4	22	73	11	78	38	25	18	18	1.92
2014888--2014981	41	2.3	41	96	0	170	40	23	17	19	1.91
2014888--2015001	41	2.8	41	90	4	158	42	22	17	17	1.89
2014973--2015185	20	10.8	20	73	7	123	39	23	19	17	1.92
2014948--2015065	61	1.9	61	82	5	148	40	23	19	16	1.90
2014997--2015120	41	3.2	41	75	15	154	38	24	17	19	1.93
2015033--2015101	34	2.0	34	88	0	102	39	23	20	17	1.92
2015092--2015141	21	2.4	21	93	0	82	32	28	14	26	1.94
2014972--2015161	96	2.0	95	87	1	272	38	23	18	18	1.93
2015687--2015724	17	2.2	17	86	9	51	50	0	2	47	1.15
2016222--2016274	21	2.5	21	81	0	70	20	22	18	37	1.94
2019716--2019895	33	5.3	33	73	12	166	45	18	21	14	1.85
2019689--2019886	105	1.9	105	86	4	283	44	18	20	16	1.86
2019900--2019940	19	2.2	19	100	0	82	9	14	24	51	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2020077--2020110	14	2.4	14	95	0	59	44	20	0	35	1.52
2021500--2021579	42	1.9	42	84	0	106	22	17	37	22	1.94
2022034--2022095	19	3.5	19	72	20	71	46	22	20	9	1.80
2022004--2022107	33	3.2	33	91	2	167	46	22	21	10	1.81
2022193--2022357	78	2.1	78	96	1	305	47	21	10	20	1.80
2022387--2022429	19	2.3	19	95	0	77	41	23	4	30	1.74
2022293--2022517	113	2.0	113	91	1	362	47	18	11	23	1.80
2024220--2024274	20	2.8	19	89	8	83	38	23	23	14	1.92
2024317--2024407	20	4.6	20	82	9	114	12	17	19	50	1.77
2024954--2025167	20	10.6	20	80	6	243	18	19	25	36	1.94
2024956--2025167	41	5.2	41	92	1	347	18	18	25	37	1.94
2025176--2025228	20	2.7	20	96	0	97	13	16	24	45	1.83
2031371--2031415	22	2.1	22	88	12	67	44	2	0	53	1.13
2031465--2031500	15	2.5	15	95	4	65	47	0	0	52	1.00
2031412--2031520	38	3.0	36	77	17	109	47	0	1	50	1.11
2036056--2036201	35	4.2	35	71	15	122	56	0	2	39	1.18
2036053--2036201	51	2.9	49	86	7	181	57	0	2	39	1.18
2036078--2036127	19	2.5	21	84	9	61	54	0	4	42	1.19
2036053--2036194	16	8.3	16	72	16	115	56	0	2	40	1.19
2038178--2038216	20	1.9	20	84	5	51	48	17	7	25	1.74
2042988--2043030	20	2.3	19	84	11	61	25	30	6	37	1.82
2048265--2048306	18	2.3	18	95	0	75	35	30	7	26	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2048307--2048350	22	2.0	22	90	0	70	29	25	20	25	1.99
2048382--2048439	18	3.4	18	79	13	77	27	31	15	25	1.96
2048374--2048438	33	2.0	33	93	0	112	26	29	20	24	1.99
2048481--2048536	21	2.7	21	97	0	103	23	30	25	21	1.99
2051761--2051808	22	2.2	22	88	3	71	27	22	25	25	2.00
2052216--2052285	33	2.1	33	83	0	86	32	15	28	22	1.95
2057031--2057071	15	2.7	15	96	3	73	63	4	21	9	1.44
2060889--2060987	51	2.0	49	88	4	144	57	7	35	0	1.26
2060921--2060965	18	2.4	19	85	7	65	62	0	37	0	0.96
2060889--2061002	51	2.3	49	81	10	128	57	6	36	0	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17