genome.fa.s7909.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007909.1 Hibiscus syriacus cultivar Beakdansim tig00110303_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3382237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  5  of  17  ( 1978 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
835843--835892	26	1.9	26	95	0	91	20	20	36	24	1.95
836522--836583	29	2.1	31	82	17	78	40	22	11	25	1.87
837483--837551	30	2.2	30	82	15	86	36	5	14	43	1.70
837492--837551	29	2.0	30	90	6	95	35	6	13	45	1.70
837630--837686	20	2.8	21	79	12	73	28	33	19	19	1.96
837892--837931	20	1.9	21	85	10	55	37	37	10	15	1.80
838146--838215	34	2.1	32	84	5	86	32	15	28	22	1.95
843588--843685	48	2.0	48	100	0	196	38	16	22	22	1.92
848888--848917	15	2.0	15	93	0	51	63	20	0	16	1.31
850503--850560	2	29.0	2	96	0	107	48	0	1	50	1.11
851370--851515	21	7.0	21	72	16	124	21	19	23	34	1.96
851376--851515	42	3.3	42	93	0	244	21	19	24	35	1.96
851601--851653	6	9.5	6	97	2	78	28	54	16	0	1.43
851605--851656	5	9.6	5	97	2	68	26	53	19	0	1.45
852492--852516	6	4.2	6	100	0	50	0	16	0	84	0.63
856431--856476	20	2.2	21	88	11	76	15	28	8	47	1.74
856436--856476	20	2.0	20	100	0	82	14	29	9	46	1.77
856716--856949	20	11.6	20	80	7	215	35	20	20	24	1.96
856700--856957	122	2.1	122	84	7	328	34	20	19	26	1.96
856716--856945	61	3.8	60	75	10	211	35	20	20	24	1.96
857468--857534	19	3.5	19	85	2	89	49	25	14	10	1.76
857530--857613	19	4.7	19	75	14	88	13	22	20	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
857530--857647	52	2.2	52	89	4	175	13	23	20	42	1.88
859369--859559	94	2.0	94	94	2	339	20	12	19	46	1.83
859829--859895	21	3.2	21	66	6	55	23	35	20	19	1.95
861397--861453	14	3.7	14	77	20	60	45	22	22	8	1.80
861379--861468	33	2.7	33	92	0	144	44	21	21	13	1.85
861379--861439	19	3.5	19	78	21	78	45	21	21	11	1.82
861464--861614	19	8.7	19	67	21	98	15	22	19	41	1.90
861468--861594	33	3.9	32	89	8	202	14	22	19	42	1.88
861461--861593	66	2.0	66	98	0	257	16	22	19	41	1.90
863885--863909	12	2.1	12	100	0	50	0	28	0	72	0.86
864084--864137	24	2.2	24	90	0	81	40	20	16	22	1.91
864882--864932	20	2.5	20	100	0	102	29	19	31	19	1.97
865151--865277	33	3.8	33	94	0	218	44	19	23	12	1.85
865277--865320	18	2.4	18	96	3	79	11	15	27	45	1.81
865326--865404	19	4.4	19	78	15	96	13	20	16	49	1.79
865343--865417	33	2.3	33	92	0	123	13	22	17	46	1.82
865277--865404	52	2.5	52	85	8	165	12	18	21	47	1.81
865354--865428	33	2.2	33	88	2	105	14	22	17	45	1.85
866905--866948	22	2.0	22	95	0	79	18	15	45	20	1.85
867137--867188	20	2.6	20	87	0	77	25	19	28	26	1.98
867197--867250	20	2.7	20	91	0	90	27	18	22	31	1.97
867116--867253	61	2.3	61	83	0	177	24	16	23	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
867542--867583	14	2.9	14	86	13	59	21	7	0	71	1.09
868526--868559	18	2.0	16	88	11	50	38	0	0	61	0.96
876579--876637	29	2.0	29	100	0	118	38	23	20	16	1.92
877811--878018	105	2.0	105	99	0	407	31	9	18	41	1.81
881361--881432	14	5.4	14	67	12	62	34	6	19	38	1.79
881353--881433	26	3.1	26	100	0	162	35	7	18	38	1.79
882014--882072	23	2.6	23	86	0	82	16	27	22	33	1.95
884317--884345	2	14.5	2	100	0	58	51	0	0	48	1.00
885475--885531	28	2.0	27	83	6	69	31	10	10	47	1.72
885858--885895	17	2.3	17	90	4	60	47	5	2	44	1.39
886101--886178	29	2.7	29	91	2	120	30	8	14	46	1.75
886004--886324	123	2.5	126	87	6	454	34	11	13	40	1.80
886374--886424	17	2.7	19	88	8	70	45	3	3	47	1.40
896116--896219	28	3.6	28	84	5	127	39	10	9	40	1.73
900664--900770	19	5.4	20	77	12	105	33	22	15	28	1.95
900664--900770	40	2.7	39	83	11	121	33	22	15	28	1.95
900927--900965	16	2.5	15	84	8	51	28	5	0	66	1.12
901434--901467	12	2.8	12	90	0	50	55	29	0	14	1.40
901593--901646	24	2.2	24	90	0	81	24	16	18	40	1.90
903900--903935	18	2.0	18	94	0	63	55	22	2	19	1.56
904293--904332	20	2.0	20	95	0	71	17	20	25	37	1.94
904754--904790	18	2.1	18	89	0	56	32	5	10	51	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
904746--904798	24	2.2	24	86	0	70	35	3	13	47	1.61
905392--905429	20	1.9	20	94	0	67	15	18	23	42	1.89
905488--905627	66	2.2	60	85	7	181	50	17	0	31	1.51
906985--907037	21	2.5	22	81	9	65	16	26	37	18	1.93
907005--907102	21	4.7	21	75	13	94	20	19	35	24	1.95
907005--907103	42	2.3	43	78	13	116	21	19	35	24	1.96
909290--909321	13	2.5	13	94	0	55	75	15	9	0	1.05
909741--909921	20	9.1	20	74	12	124	23	17	19	39	1.92
909741--909921	60	3.0	59	79	12	199	23	17	19	39	1.92
909908--909961	20	2.7	21	82	8	76	24	12	33	29	1.92
910890--910920	16	1.9	16	100	0	62	38	6	3	51	1.44
922336--922371	18	2.0	18	100	0	72	50	5	38	5	1.49
925528--925596	31	2.2	31	86	0	93	46	11	14	27	1.79
930186--930225	20	2.0	20	95	0	71	45	12	5	37	1.64
930240--930277	20	1.9	20	94	0	67	39	18	5	36	1.73
936922--936960	20	2.0	20	89	0	60	46	10	5	38	1.60
936918--937066	53	2.8	52	94	2	262	48	12	5	33	1.64
936918--937066	52	2.8	53	95	2	266	48	12	5	33	1.64
936974--937013	20	2.0	21	90	5	64	45	15	5	35	1.68
937027--937065	20	2.0	20	94	0	69	41	17	5	35	1.72
944674--944717	20	2.3	19	81	11	54	36	0	0	63	0.95
945415--945487	33	2.2	33	83	9	87	21	21	28	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
945426--945496	33	2.2	33	85	10	92	22	21	28	28	1.99
945814--946278	60	7.9	59	77	8	428	20	18	29	31	1.97
946616--946707	33	2.8	33	86	0	121	22	21	25	30	1.99
949586--949612	13	2.1	13	100	0	54	55	0	0	44	0.99
955110--955160	17	2.5	21	70	29	56	13	23	47	15	1.82
955115--955155	17	2.4	17	100	0	82	14	24	43	17	1.86
955163--955253	9	9.4	9	79	13	92	28	28	27	15	1.96
955163--955254	19	4.7	19	84	9	114	28	28	27	16	1.97
955169--955254	29	2.9	30	81	13	106	29	27	26	16	1.97
962430--962484	5	10.2	5	77	14	56	7	21	52	18	1.69
962424--962484	17	3.0	22	77	22	87	9	22	49	18	1.77
962435--962482	17	2.8	17	100	0	96	8	22	50	18	1.74
962494--962564	19	3.7	19	94	3	117	30	30	22	15	1.95
962482--962580	9	10.4	9	70	13	65	28	30	26	15	1.96
962492--962580	38	2.3	37	83	11	117	29	30	25	14	1.95
962498--962601	10	10.8	9	68	13	55	30	28	24	16	1.96
962543--962601	20	2.9	20	80	9	66	32	25	25	16	1.97
963531--963617	21	4.1	21	73	8	70	16	17	27	39	1.90
963697--963726	6	5.0	6	95	0	51	30	53	16	0	1.44
964342--964394	22	2.4	22	100	0	106	35	28	18	16	1.93
964386--964458	20	3.6	20	68	3	65	39	23	21	15	1.91
964383--964483	41	2.5	41	91	0	175	37	23	19	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
964361--964487	21	6.1	21	68	6	80	37	25	18	18	1.93
973220--973285	22	3.0	22	80	2	71	27	21	22	28	1.99
973845--973878	17	1.9	18	88	5	52	35	17	8	38	1.81
974034--974346	118	2.7	117	79	9	307	32	19	9	38	1.85
974145--974347	59	3.5	59	95	0	354	31	20	9	37	1.86
974145--974374	59	3.9	58	89	5	263	32	20	10	36	1.87
976703--976762	24	2.3	27	75	11	63	40	20	1	38	1.62
985536--985569	17	1.9	18	88	5	52	35	17	8	38	1.81
985836--986038	59	3.5	59	95	0	354	31	20	9	38	1.85
995696--995732	3	12.3	3	100	0	74	67	0	32	0	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17