genome.fa.s8056.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008056.1 Hibiscus syriacus cultivar Beakdansim tig00110551_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2370532

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  1  of  13  ( 1489 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24853--24893	21	1.9	22	85	5	57	53	7	0	39	1.29
36044--36582	259	2.1	260	87	5	770	34	16	14	34	1.89
36950--37016	20	3.3	20	77	8	73	40	35	13	10	1.79
40626--40655	7	4.3	7	95	0	51	56	0	0	43	0.99
48983--49066	30	2.7	31	77	3	107	35	14	17	32	1.90
49685--49729	19	2.3	20	88	3	65	17	24	37	20	1.93
50635--50703	30	2.3	30	90	5	104	52	10	8	28	1.65
54015--54085	27	2.6	27	81	0	97	45	36	11	7	1.67
55312--55351	2	20.0	2	100	0	80	50	0	0	50	1.00
59257--59326	12	5.8	12	77	17	65	78	1	18	1	0.90
59254--59323	25	2.9	24	83	10	90	78	1	18	1	0.90
59254--59323	24	3.0	22	84	13	88	78	1	18	1	0.90
59254--59326	23	3.0	23	79	16	78	78	1	19	1	0.91
62574--62603	12	2.5	12	94	0	51	36	20	6	36	1.79
63412--63446	18	1.9	18	94	0	61	17	22	31	28	1.96
64600--64687	36	2.4	37	75	9	92	31	15	12	39	1.85
64569--64707	73	1.9	74	81	10	169	31	17	12	38	1.88
64620--64837	102	2.1	102	89	1	330	35	17	10	36	1.84
65463--65831	104	3.6	103	84	2	445	35	22	15	26	1.94
65437--65831	208	1.9	208	85	2	551	35	22	15	26	1.94
66036--66083	3	16.0	3	100	0	96	33	0	0	66	0.92
67621--67655	2	17.5	2	100	0	70	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70494--70553	30	2.0	30	93	0	102	30	13	13	43	1.82
78637--78797	57	2.9	56	80	10	168	26	21	20	32	1.97
80285--80353	26	2.7	26	88	2	95	21	17	43	17	1.88
80564--80602	21	1.9	20	94	5	69	10	0	20	69	1.17
83384--83461	31	2.5	31	85	2	104	33	17	6	42	1.75
84419--84476	29	2.0	30	86	3	82	36	17	6	39	1.76
84682--84739	24	2.4	24	79	0	62	46	15	12	25	1.80
93360--93408	24	2.2	23	86	13	68	32	18	22	26	1.97
94387--94416	2	14.5	2	93	6	51	46	0	3	50	1.18
94387--94450	10	5.5	12	76	12	55	39	0	12	48	1.41
94400--94480	32	2.5	34	78	13	82	33	0	16	50	1.45
96063--96165	44	2.4	44	86	1	136	30	24	20	25	1.99
98482--98509	12	2.3	12	100	0	56	46	7	7	39	1.59
98936--99000	19	3.4	19	89	0	103	33	29	21	15	1.94
101613--101668	2	28.0	2	100	0	112	50	0	0	50	1.00
102296--102345	15	3.1	16	75	16	50	54	26	10	10	1.65
104824--104851	14	2.0	14	100	0	56	42	14	7	35	1.73
108806--108881	36	2.1	36	85	11	102	48	2	2	46	1.30
109021--109064	20	2.3	19	85	11	63	20	25	9	45	1.80
109027--109064	20	1.9	20	94	0	67	21	23	10	44	1.83
109226--109276	24	2.1	25	81	3	59	33	1	1	62	1.17
110071--110105	10	3.5	10	84	0	52	31	25	0	42	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110153--110193	18	2.3	18	91	4	66	29	4	0	65	1.13
112205--112260	3	18.7	3	81	0	67	35	28	32	3	1.74
112215--112271	15	4.0	15	77	13	66	38	24	28	8	1.85
112383--112454	26	3.0	24	75	21	69	26	4	5	63	1.34
116139--116238	41	2.4	41	91	0	164	18	38	22	22	1.94
117091--117133	21	2.0	21	100	0	86	18	13	9	58	1.62
120337--120370	12	2.8	12	86	4	50	32	0	0	67	0.91
125708--125997	73	4.0	71	82	9	291	23	20	13	42	1.88
125749--126007	109	2.4	108	84	8	312	23	20	13	42	1.88
125883--125943	21	3.2	21	60	26	53	24	18	14	42	1.88
125711--126007	36	8.1	36	84	6	287	23	20	13	42	1.88
125937--125991	15	3.1	17	70	25	51	20	27	14	38	1.91
125868--126243	174	2.1	175	85	5	510	26	18	15	40	1.90
126013--126174	36	4.4	36	81	5	191	24	17	16	41	1.89
126004--126174	73	2.3	74	85	5	213	25	16	15	42	1.87
126041--126172	38	3.6	38	87	3	171	25	15	16	42	1.88
126627--126674	3	16.0	3	91	0	78	31	0	2	66	1.03
133073--133115	17	2.5	18	82	17	56	37	2	0	60	1.10
134142--134203	11	5.9	10	79	9	61	69	3	4	22	1.22
134253--134313	24	2.5	24	79	7	70	54	0	1	44	1.10
134842--134870	10	2.9	10	100	0	58	51	0	0	48	1.00
135323--135398	23	3.3	23	68	15	66	36	2	22	38	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135324--135420	46	2.1	45	81	11	108	39	2	19	39	1.64
135958--136026	27	2.5	28	81	11	81	49	7	4	39	1.50
136396--136439	16	2.6	18	78	10	56	45	0	0	54	0.99
142499--142565	6	11.3	6	71	15	50	64	1	0	34	1.03
143500--143540	9	4.7	9	82	11	50	31	24	19	24	1.98
144703--144735	16	2.1	16	88	5	50	63	0	3	33	1.10
147454--147509	3	19.3	3	81	7	71	60	1	0	37	1.07
147455--147486	11	2.9	11	95	0	55	65	3	0	31	1.08
147885--147947	21	2.9	23	68	15	62	17	23	23	34	1.96
147761--148022	116	2.2	117	95	0	463	27	20	20	30	1.98
149048--149322	54	5.1	54	82	0	318	25	22	15	36	1.94
149048--149322	108	2.5	108	84	2	356	25	22	15	36	1.94
152026--152069	22	2.0	21	86	4	61	0	20	2	77	0.88
156237--156279	16	2.7	16	79	13	52	74	2	6	16	1.14
157647--157718	36	2.0	36	84	13	94	55	1	4	38	1.28
157791--157836	24	1.9	23	83	16	58	54	6	0	39	1.26
159179--159211	3	11.3	3	87	6	50	63	3	0	33	1.10
159180--159206	14	1.9	14	100	0	54	66	3	0	29	1.09
160628--160724	3	30.7	3	71	10	59	61	0	3	35	1.11
160624--160724	16	6.3	16	70	13	73	62	0	2	34	1.11
161072--161173	42	2.5	40	81	9	123	33	20	22	23	1.97
160864--161816	260	3.7	261	89	2	1418	35	16	14	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
163700--163775	16	4.6	16	75	8	64	2	18	2	76	1.02
163702--163772	21	3.2	21	77	18	74	2	18	2	76	1.04
163739--163772	11	3.2	11	83	8	52	5	17	0	76	0.98
179250--179719	235	2.0	235	100	0	940	35	12	16	35	1.87
184083--184164	42	2.0	42	82	4	103	30	19	25	24	1.98
185950--186013	20	3.2	20	86	8	94	26	17	21	34	1.95
185957--186015	20	3.0	20	92	0	100	22	18	22	37	1.94
189058--189115	22	2.8	20	80	14	73	13	25	39	20	1.90
189298--189336	20	2.1	19	85	9	53	56	7	0	35	1.28
189747--189771	2	12.5	2	100	0	50	52	0	0	48	1.00
191691--191800	23	4.8	23	84	7	134	27	22	29	20	1.99
191691--191800	46	2.4	46	84	4	150	27	22	29	20	1.99
191691--191779	23	3.8	23	89	2	142	29	22	28	20	1.98
197692--197730	20	2.1	19	85	9	53	56	7	0	35	1.28
199328--199386	3	18.7	3	79	10	64	64	1	0	33	1.04
199345--199383	19	2.1	19	90	0	60	64	0	0	35	0.94
199328--199393	22	3.0	22	88	2	96	63	1	0	34	1.04
199638--199684	22	2.2	22	84	3	60	57	2	8	31	1.41
200877--200958	2	42.0	2	95	4	150	50	0	0	50	1.00
201541--201603	24	2.4	27	79	17	87	46	14	0	39	1.45
201541--201604	26	2.5	25	85	12	85	46	14	0	39	1.44
205664--205726	24	2.9	21	69	15	56	44	1	3	50	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
206883--207027	59	2.4	58	83	7	159	36	15	17	31	1.90
210578--210603	11	2.4	11	100	0	52	7	26	7	57	1.54
211215--211274	29	2.0	30	96	3	113	48	3	13	35	1.59
213549--213608	21	2.9	21	75	9	68	16	23	36	23	1.94
220966--221841	263	3.4	257	87	5	1222	27	11	19	41	1.86
222050--222186	21	6.8	20	69	7	71	35	26	17	20	1.95
222154--222305	39	3.8	40	80	11	179	36	26	18	17	1.93
222154--222299	79	1.9	77	87	7	213	36	26	17	18	1.93
222154--222304	20	7.7	20	81	8	175	36	27	18	17	1.94
222686--222756	33	2.2	33	92	0	115	11	22	18	47	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13