genome.fa.s8056.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008056.1 Hibiscus syriacus cultivar Beakdansim tig00110551_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2370532

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  2  of  13  ( 1489 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
222836--222910	20	3.7	21	82	5	100	46	17	25	10	1.80
222835--222911	41	1.9	40	94	2	136	45	16	25	11	1.82
222887--222966	31	2.5	32	91	4	126	47	22	21	8	1.78
222983--223072	14	5.7	14	72	23	72	8	24	22	44	1.81
222967--223080	33	3.5	33	97	0	210	8	22	21	46	1.79
222997--223058	19	3.5	19	75	20	80	9	22	22	45	1.81
224768--225143	93	4.1	93	98	0	727	21	12	19	46	1.83
225207--225305	19	5.5	19	82	11	136	47	28	17	7	1.73
225301--225398	16	5.8	17	75	21	91	11	21	21	45	1.82
225323--225379	14	3.7	14	77	20	60	10	21	22	45	1.82
225306--225397	33	2.8	33	93	1	159	10	20	21	46	1.81
225301--225415	19	6.6	18	69	19	57	12	20	22	45	1.84
225809--225894	44	2.0	44	85	0	118	20	40	16	22	1.91
227333--227368	14	2.6	14	95	0	63	33	0	22	44	1.53
227475--227572	19	5.4	19	84	13	143	45	17	22	14	1.84
227475--227591	53	2.2	53	96	1	218	43	17	24	13	1.86
227581--227782	19	11.7	19	73	21	194	14	21	18	45	1.85
227587--227796	33	6.2	33	76	15	223	13	21	18	45	1.84
227581--227751	52	3.3	52	97	0	315	14	22	17	45	1.85
230274--230320	24	2.0	24	87	8	69	38	21	14	25	1.92
231002--231211	20	10.4	20	86	2	249	20	17	24	37	1.94
231002--231272	40	6.7	40	83	8	282	20	17	24	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
231220--231272	20	2.7	20	82	5	63	13	18	24	43	1.86
231103--231254	62	2.5	62	82	10	163	21	17	26	35	1.95
231240--231337	21	4.7	21	71	6	65	23	19	20	36	1.95
232150--232224	38	2.0	37	84	5	98	46	0	4	49	1.20
236329--236820	55	9.0	54	83	7	510	30	24	16	28	1.97
236331--236820	165	3.0	163	85	3	563	30	24	16	28	1.97
236824--236933	37	3.0	37	91	2	168	21	21	20	36	1.95
238363--238437	24	3.1	23	84	9	96	28	29	24	18	1.98
238372--238437	24	2.8	24	92	0	105	28	28	22	19	1.98
240148--240215	21	3.2	21	79	4	84	20	29	17	32	1.96
241639--241706	11	6.4	11	81	10	70	4	14	0	80	0.85
241655--241729	28	2.5	31	82	8	84	5	16	0	78	0.92
241644--241723	39	2.0	40	86	13	114	3	16	0	80	0.86
241639--241730	10	9.1	10	77	11	64	5	15	0	79	0.91
241638--241730	38	2.3	40	80	19	113	5	16	0	78	0.93
246755--246809	24	2.3	24	96	0	101	21	41	5	30	1.76
261758--261804	24	2.0	24	83	8	60	68	4	0	27	1.08
264061--264173	43	2.6	43	81	6	113	30	14	19	36	1.91
267838--267885	3	16.0	3	100	0	96	66	0	0	33	0.92
268904--268952	21	2.5	20	83	9	64	73	0	6	20	1.04
269028--269283	38	6.6	36	77	15	201	48	5	2	44	1.39
269015--269085	36	2.0	36	91	5	117	47	5	2	43	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
269028--269099	36	2.1	36	89	5	112	51	5	0	43	1.25
269075--269290	38	5.7	37	81	10	258	47	5	2	43	1.41
270238--270580	41	8.2	41	72	10	192	34	19	17	28	1.94
270249--270428	93	1.9	93	82	2	227	33	18	17	30	1.95
270387--270579	40	4.8	41	76	7	162	36	19	15	28	1.92
270426--270572	79	1.9	79	84	2	197	37	19	14	27	1.92
273655--273703	19	2.6	18	79	17	55	28	18	14	38	1.90
281175--281227	20	2.6	21	82	11	65	43	13	16	26	1.85
281382--281844	230	2.0	231	93	6	796	36	12	22	28	1.90
282043--282271	112	2.1	111	89	2	352	28	16	19	35	1.93
283207--283373	30	5.5	29	67	17	106	32	9	13	44	1.77
283272--283360	29	2.9	29	85	8	106	37	8	11	42	1.72
291477--291529	19	2.8	20	85	5	74	67	5	5	20	1.32
295161--295222	23	2.7	23	87	2	90	20	25	30	22	1.98
303959--303993	4	8.5	4	87	6	52	71	0	5	22	1.07
306450--306486	15	2.5	15	90	0	56	5	70	16	8	1.30
308002--308158	42	3.8	41	72	15	117	31	20	19	28	1.97
308086--308345	41	6.3	41	83	7	280	32	17	18	31	1.94
308086--308345	123	2.1	124	83	7	325	32	17	18	31	1.94
308086--308371	82	3.5	82	82	7	314	33	17	18	30	1.94
311656--311721	21	3.1	21	80	8	73	40	15	39	4	1.67
312041--312158	42	2.8	43	82	10	136	33	19	17	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
312131--312261	43	3.0	42	81	4	145	31	25	16	26	1.97
320063--320102	2	20.0	2	94	0	71	50	2	0	47	1.14
322527--322597	21	3.3	20	75	18	63	33	25	15	25	1.95
322541--322599	21	2.7	23	87	7	79	33	25	18	22	1.96
322541--322599	22	2.7	22	85	12	77	33	25	18	22	1.96
327284--327339	22	2.5	22	77	5	60	32	23	14	30	1.94
328049--328102	18	2.9	18	75	19	58	25	22	14	37	1.93
332130--332196	21	3.1	22	81	16	70	31	26	17	23	1.97
332157--332202	23	2.0	22	87	4	65	32	21	19	26	1.97
332851--332922	18	3.6	21	78	17	73	30	19	12	37	1.89
332847--332922	40	2.0	37	85	12	100	30	19	11	38	1.88
335539--335604	20	3.4	19	84	15	75	42	0	0	57	0.98
335540--335605	17	3.9	18	81	18	81	42	0	0	57	0.98
343386--343467	42	2.0	42	87	0	119	23	19	20	36	1.95
343386--343449	22	3.0	22	71	13	62	20	20	20	39	1.93
343675--343763	3	29.3	3	77	17	87	38	1	0	60	1.04
343679--343757	17	4.8	16	78	18	83	39	1	0	59	1.06
343705--343765	25	2.3	27	83	10	74	39	1	0	59	1.08
343703--343791	37	2.3	38	80	16	96	41	3	0	55	1.17
348483--348516	15	2.3	15	100	0	68	17	8	38	35	1.81
350862--350936	2	37.5	2	100	0	150	50	0	0	49	1.00
352021--352072	15	3.4	15	78	5	68	30	25	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352009--352109	31	3.2	31	88	1	148	33	27	17	20	1.96
352012--352059	16	3.1	16	75	6	62	33	29	18	18	1.95
356291--356322	14	2.3	14	100	0	64	6	15	28	50	1.68
356292--356342	24	2.1	24	85	0	66	11	11	21	54	1.68
357358--357432	10	7.7	10	72	21	70	12	10	18	58	1.61
357364--357436	16	4.7	16	84	3	96	12	9	17	60	1.58
357359--357425	32	2.1	32	100	0	134	11	8	19	59	1.58
360725--360766	19	2.3	18	87	4	57	9	21	0	69	1.17
361316--361348	17	2.0	16	94	5	57	36	42	6	15	1.71
364320--364426	46	2.3	46	90	6	164	30	20	17	30	1.96
370171--370250	23	3.6	22	76	10	83	27	22	23	26	2.00
372913--373018	46	2.3	46	85	9	137	28	19	19	32	1.97
376602--376631	15	2.0	15	100	0	60	46	13	0	40	1.43
382075--382109	18	1.9	18	88	0	52	0	2	8	88	0.61
386197--386348	42	3.7	40	70	16	121	35	20	15	28	1.93
386343--386493	41	3.7	41	86	5	209	35	13	17	33	1.90
397949--397991	23	1.9	23	85	4	61	30	30	16	23	1.96
399450--399482	15	2.1	16	94	5	59	30	18	27	24	1.98
400414--400462	18	2.7	18	84	6	64	18	20	30	30	1.96
400826--400870	24	2.0	22	82	8	54	55	2	20	22	1.54
404035--404095	21	3.0	21	81	9	83	21	26	26	26	1.99
404040--404163	18	7.0	18	67	24	77	21	24	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404079--404189	28	3.6	28	74	23	114	19	23	28	27	1.98
404102--404162	21	3.0	21	81	9	83	21	26	26	26	1.99
404033--404189	67	2.3	67	100	0	314	20	24	27	28	1.99
426622--426696	24	3.1	24	84	3	89	13	9	20	57	1.63
426621--426676	14	4.3	14	73	17	57	10	10	23	55	1.65
427427--427491	16	4.2	16	92	3	98	10	10	20	58	1.61
427553--427585	16	2.1	16	100	0	66	6	12	24	57	1.57
432112--432604	66	7.5	66	79	9	481	39	12	21	26	1.89
432215--432322	30	3.4	31	70	22	89	38	11	23	26	1.88
432112--432606	132	3.8	132	88	1	683	39	12	21	26	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13