genome.fa.s8056.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008056.1 Hibiscus syriacus cultivar Beakdansim tig00110551_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2370532

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  3  of  13  ( 1489 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432386--432428	21	2.1	20	82	4	50	44	13	16	25	1.85
432112--432611	198	2.5	197	81	7	568	39	12	21	27	1.89
433084--433117	16	2.1	16	100	0	68	26	0	23	50	1.50
434123--434159	2	18.5	2	100	0	74	51	48	0	0	1.00
434159--434190	2	16.0	2	100	0	64	50	0	0	50	1.00
440179--440253	32	2.4	31	82	6	89	32	30	25	12	1.92
442785--442849	3	21.3	3	90	9	105	32	0	0	67	0.91
446745--446865	3	40.7	3	96	1	226	33	0	0	66	0.98
447017--447134	54	2.2	54	80	3	130	43	27	13	15	1.84
453993--454035	15	2.9	15	85	0	50	46	9	23	20	1.79
455832--455948	37	3.2	37	79	3	130	41	10	14	33	1.80
455887--455972	37	2.4	37	78	2	93	47	10	13	27	1.76
466888--467036	20	7.6	19	73	12	79	34	26	16	22	1.95
466947--467045	40	2.5	38	79	10	110	36	23	18	22	1.95
467184--467256	22	3.4	22	83	3	87	30	39	12	17	1.87
467722--467770	20	2.5	20	96	3	91	10	18	20	51	1.75
469484--469533	21	2.4	21	80	6	57	20	12	38	30	1.88
469854--469931	21	3.7	21	84	5	104	23	30	20	25	1.98
471291--471323	13	2.4	14	90	5	50	33	0	18	48	1.48
471447--471528	20	4.1	20	79	0	92	36	19	19	24	1.95
471460--471535	40	1.9	40	88	0	116	34	17	21	27	1.95
471455--471538	20	4.2	20	76	0	78	34	17	22	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
471581--471631	19	2.6	20	90	6	86	17	17	19	45	1.86
471815--471850	18	2.0	18	94	0	63	16	2	25	55	1.55
474072--474123	24	2.2	24	82	0	59	38	19	19	23	1.93
474235--474268	12	2.8	12	90	0	50	14	0	29	55	1.40
475044--475128	40	2.1	40	86	4	118	34	14	23	28	1.93
475044--475132	20	4.5	20	73	9	76	35	13	22	28	1.92
476855--476897	22	2.0	22	81	9	52	48	4	11	34	1.60
477027--477051	2	12.5	2	100	0	50	48	0	0	52	1.00
477063--477258	72	2.7	73	82	5	186	55	7	15	21	1.65
477423--477477	21	2.6	21	79	0	65	38	1	23	36	1.66
478962--479017	17	3.2	17	94	2	94	23	0	28	48	1.51
479051--479155	3	34.3	3	72	14	63	59	3	3	33	1.34
479690--479722	16	2.1	16	94	0	57	54	24	12	9	1.66
479791--479851	16	3.8	16	88	0	86	59	21	11	8	1.58
480921--480961	14	2.9	14	85	0	55	56	19	12	12	1.67
480934--480972	14	3.1	14	72	27	50	51	25	15	7	1.70
481762--481852	47	1.9	47	93	4	157	31	21	14	31	1.93
483619--483670	21	2.5	21	81	3	61	38	19	25	17	1.93
483681--483733	20	2.7	20	84	0	79	26	28	18	26	1.98
483921--483964	22	2.0	22	95	0	79	20	45	15	18	1.85
484203--484261	20	3.0	20	87	0	73	16	18	22	42	1.89
485580--485624	18	2.5	18	88	0	72	26	44	15	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
486100--486166	20	3.4	20	81	2	73	37	23	22	16	1.94
486155--486212	14	3.9	14	75	16	62	48	22	17	12	1.80
486139--486229	32	2.8	33	91	3	157	47	20	18	13	1.82
486246--486303	14	3.9	14	79	16	71	10	17	24	48	1.78
486241--486319	32	2.4	33	95	2	142	11	18	22	46	1.81
486306--486360	20	2.7	20	82	2	65	12	23	25	38	1.90
488233--488268	14	2.6	14	90	0	54	30	0	22	47	1.52
488351--488389	20	2.0	20	94	0	69	46	30	10	12	1.75
488395--488437	19	2.3	19	100	0	86	46	11	20	20	1.82
488406--488447	19	2.2	19	86	0	57	52	11	21	14	1.73
488485--488554	20	3.5	20	94	1	124	15	22	27	34	1.95
488478--488554	39	2.0	40	92	7	131	15	20	25	37	1.92
488980--489035	20	2.8	20	81	2	60	44	26	17	10	1.82
489009--489069	19	3.5	19	70	21	60	45	21	21	11	1.82
489009--489100	33	2.9	32	83	3	114	46	21	19	11	1.82
489071--489115	18	2.4	19	88	7	74	46	24	15	13	1.82
489115--489243	33	3.9	33	87	1	177	13	23	17	45	1.83
489194--489245	19	3.0	19	73	21	60	15	21	21	42	1.89
489258--489308	20	2.5	20	100	0	102	19	31	19	29	1.97
490051--490104	24	2.2	24	90	0	81	22	16	20	40	1.91
490279--490303	12	2.1	12	100	0	50	72	0	28	0	0.86
492559--492705	33	4.2	36	75	18	143	42	19	21	16	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
492579--492705	33	3.8	33	86	8	195	43	18	22	14	1.87
492580--492705	66	1.9	65	96	1	234	42	19	23	15	1.88
492705--492786	33	2.5	33	93	0	137	12	21	20	45	1.84
492734--492786	19	3.1	19	69	25	62	9	24	20	45	1.81
492720--492776	14	3.7	14	72	20	51	8	22	22	45	1.80
492901--492936	13	2.6	14	82	8	56	44	25	0	30	1.54
494282--494348	21	3.2	21	68	4	55	19	19	35	25	1.95
494630--494807	91	1.9	90	88	6	268	47	17	12	21	1.81
496485--496549	32	2.0	33	91	8	107	38	24	26	10	1.88
496470--496612	47	2.9	50	84	7	168	42	23	22	11	1.86
496462--496617	18	9.1	18	71	21	113	42	21	23	12	1.86
497264--497314	20	2.5	20	96	0	93	25	19	25	29	1.99
498635--498826	101	1.9	101	94	2	341	33	13	7	45	1.70
500491--500572	38	2.2	38	95	0	146	52	2	12	32	1.52
506722--506750	15	1.9	15	100	0	58	13	27	24	34	1.93
508773--508838	21	3.2	21	76	6	64	63	1	0	34	1.04
510567--511051	108	4.4	107	73	6	416	38	13	15	33	1.86
511577--511648	23	3.1	23	91	0	117	30	6	18	44	1.76
516625--516696	18	3.4	22	70	20	62	50	0	5	44	1.25
516610--516696	22	4.1	21	70	19	56	44	0	5	49	1.26
516625--516728	41	2.5	42	83	6	124	48	0	4	46	1.30
519977--520292	154	2.1	153	89	4	476	41	18	13	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
533655--533775	23	5.5	22	68	16	90	52	1	4	42	1.30
534604--534634	7	4.4	7	95	0	53	38	12	0	48	1.42
535077--535133	26	2.3	23	79	8	69	40	3	3	52	1.35
536073--536162	38	2.4	38	88	1	146	37	40	10	12	1.76
537825--537864	3	14.7	3	80	19	52	37	0	0	62	0.95
537828--537873	5	8.8	5	86	13	58	36	0	0	63	0.95
545665--545728	23	2.8	23	82	0	92	31	28	25	15	1.96
545941--546003	23	2.8	22	90	7	99	31	26	11	30	1.91
552813--552905	47	2.0	48	85	6	127	26	29	17	26	1.97
553189--553259	5	14.2	5	96	0	115	40	15	0	43	1.47
553256--553283	3	9.3	3	100	0	56	35	0	0	64	0.94
554721--554770	21	2.5	20	76	3	55	44	2	0	54	1.11
560357--560411	22	2.5	22	93	0	92	36	9	16	38	1.80
560973--561102	20	6.5	20	91	0	179	26	14	20	38	1.91
561256--561468	96	2.2	96	85	4	279	43	14	22	19	1.87
563190--563253	29	2.2	30	91	2	103	35	12	20	31	1.90
563235--563281	18	2.7	18	86	3	69	27	29	8	34	1.87
566482--566581	3	35.0	3	86	13	149	67	0	0	33	0.91
571547--572012	236	2.0	229	94	5	828	27	16	15	41	1.87
573216--573327	35	3.2	34	86	3	152	43	21	0	33	1.59
573381--573438	29	2.0	30	82	3	73	46	5	3	44	1.42
574355--574462	35	3.2	35	77	10	134	36	0	20	43	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
578357--578710	179	2.0	178	95	0	636	35	17	11	36	1.85
579232--579314	23	3.7	22	84	9	98	28	25	21	24	1.99
579246--579315	23	3.0	23	87	0	104	30	22	21	25	1.99
582299--582339	21	2.0	21	95	4	75	29	14	9	46	1.77
582328--582404	33	2.4	32	86	4	118	31	7	15	45	1.75
583846--583877	8	4.0	8	100	0	64	62	0	37	0	0.95
592473--592529	28	2.0	28	100	0	114	35	7	24	33	1.82
597684--597856	86	2.0	86	100	0	346	33	26	15	24	1.95
598694--598729	11	3.3	11	84	0	54	63	19	0	16	1.30
598718--598784	16	4.2	16	71	7	55	47	23	11	16	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13