genome.fa.s8056.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008056.1 Hibiscus syriacus cultivar Beakdansim tig00110551_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2370532

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  5  of  13  ( 1489 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
786906--786985	33	2.4	33	93	0	133	10	21	22	46	1.81
786925--786985	19	3.5	19	72	21	69	11	22	21	44	1.84
787091--787127	14	2.6	14	91	0	65	45	21	0	32	1.52
788996--789121	19	6.7	19	76	12	109	46	19	19	14	1.83
788996--789093	39	2.5	39	86	1	124	48	18	18	14	1.80
789129--789212	33	2.5	33	86	0	114	8	21	22	47	1.77
789150--789237	19	4.8	19	74	16	87	9	22	19	48	1.76
789174--789235	20	3.2	20	83	4	90	9	20	17	51	1.73
789328--789703	94	4.1	93	92	2	580	47	19	11	22	1.80
789463--789495	17	1.9	17	88	11	50	45	15	15	24	1.84
791435--791523	14	5.6	14	71	23	70	43	22	24	8	1.82
791386--791545	19	9.1	19	70	21	125	45	20	25	10	1.81
791386--791540	33	4.5	33	90	5	229	45	20	24	9	1.80
791572--791643	20	3.5	20	84	5	92	12	16	19	51	1.76
792197--792271	21	3.6	21	94	1	125	20	22	17	40	1.92
792199--792286	41	2.1	42	80	2	97	23	21	18	36	1.95
796613--796762	47	3.2	47	80	3	176	33	18	17	31	1.94
797435--797485	19	2.8	18	80	11	50	25	9	31	33	1.88
801272--801331	2	30.5	2	78	21	65	51	0	5	43	1.23
801272--801331	19	3.3	19	78	19	65	51	0	5	43	1.23
801272--801332	13	4.6	14	74	22	60	52	0	4	42	1.23
801272--801332	17	3.6	18	85	14	85	52	0	4	42	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
802603--802641	14	2.8	14	88	0	51	69	0	12	17	1.19
803140--803180	16	2.4	18	80	15	52	46	19	24	9	1.80
804148--804371	119	1.9	119	89	1	351	23	21	14	40	1.90
819353--819410	20	2.9	20	92	0	98	62	13	6	17	1.52
821875--821917	22	2.0	22	85	0	59	48	2	2	46	1.27
822464--822524	29	2.1	29	84	6	79	52	4	13	29	1.61
823954--823993	20	2.0	20	100	0	80	45	15	5	35	1.68
824951--824980	15	1.9	16	93	6	53	40	6	13	40	1.71
824987--825353	175	2.1	176	80	10	401	41	10	9	38	1.72
825242--826025	412	1.9	414	87	3	1170	39	9	8	43	1.67
826433--826474	21	2.0	21	90	0	66	26	26	26	21	1.99
829564--829620	18	3.0	18	80	14	78	28	10	10	50	1.69
829564--829620	21	2.9	19	82	12	80	28	10	10	50	1.69
829935--829976	21	2.0	21	86	9	59	26	19	28	26	1.98
830341--830410	33	2.1	33	86	0	95	32	15	27	24	1.95
831377--831428	21	2.5	21	81	3	61	38	19	25	17	1.93
831417--831551	20	6.7	20	78	7	112	34	24	17	24	1.96
831414--831545	61	2.2	61	85	0	174	36	24	15	23	1.94
832024--832071	19	2.5	20	89	3	71	18	18	27	35	1.95
833987--834117	19	7.7	19	67	23	103	42	19	23	14	1.88
833987--834113	33	3.8	33	90	4	211	42	18	23	14	1.88
833988--834118	66	2.0	66	96	0	244	41	19	23	15	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
834118--834189	33	2.2	33	92	0	117	11	20	20	47	1.81
834296--834332	14	2.6	14	82	0	56	43	24	2	29	1.68
835686--835752	21	3.2	21	68	4	55	19	20	35	23	1.95
836019--836201	90	2.0	89	90	6	287	47	18	12	21	1.81
837882--837937	14	3.6	14	74	21	58	39	25	25	10	1.87
837861--837945	33	2.5	33	98	1	161	40	23	24	11	1.88
837895--838011	52	2.2	52	90	0	189	44	21	22	11	1.84
837853--838006	19	8.9	18	70	20	98	44	20	22	11	1.84
838007--838051	19	2.4	19	88	0	63	8	13	26	51	1.70
839362--839449	37	2.4	37	100	0	176	30	11	6	51	1.64
839362--839473	37	3.0	37	89	5	129	32	9	7	50	1.62
841242--841366	32	3.9	32	78	5	119	52	5	4	36	1.46
841284--841605	98	3.3	96	70	16	273	48	9	4	37	1.56
841404--841448	23	2.0	23	82	8	56	51	8	6	33	1.59
843404--843479	36	2.2	36	92	4	129	30	2	38	28	1.71
847419--847459	6	6.7	6	88	5	64	0	17	0	82	0.66
847419--847459	13	3.2	13	93	3	66	0	17	0	82	0.66
847845--847920	36	2.2	36	90	4	120	30	2	36	30	1.71
849617--849732	60	1.9	60	84	3	153	43	6	15	34	1.71
850175--850301	62	2.0	62	89	3	193	47	7	11	34	1.66
851323--851526	54	3.8	54	78	3	191	23	25	26	25	2.00
856458--856663	110	1.9	111	81	7	258	42	15	17	24	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
858061--858529	261	1.8	260	86	0	686	39	17	10	32	1.83
858051--858529	130	3.7	131	88	0	665	40	17	10	31	1.83
859013--859062	21	2.3	21	86	3	73	68	0	10	22	1.19
859015--859050	16	2.2	16	100	0	72	69	0	5	25	1.10
860702--860746	3	15.0	3	84	9	56	66	2	0	31	1.04
860925--861170	132	1.9	133	81	3	309	32	15	19	31	1.94
868082--868132	24	2.1	24	88	0	75	25	17	15	41	1.89
873605--873821	20	9.7	20	70	22	130	43	11	23	22	1.85
873579--873833	46	5.6	46	89	5	392	44	12	21	21	1.85
889248--889284	19	1.9	19	89	10	58	43	0	37	18	1.51
898238--898315	38	2.1	38	97	0	147	30	17	17	33	1.94
902026--902146	40	3.0	40	98	1	235	32	27	17	23	1.96
916656--917001	167	2.0	172	88	4	513	20	14	22	42	1.88
919527--920022	131	3.8	130	86	2	631	40	17	10	31	1.84
919530--920014	261	1.9	261	87	0	709	40	17	10	31	1.84
922161--922207	21	2.2	21	84	0	58	63	0	0	36	0.94
922861--922969	42	2.6	40	77	11	121	31	21	20	27	1.98
923371--923468	41	2.4	40	76	10	99	36	18	18	26	1.94
922984--923463	238	2.0	237	81	5	558	36	14	16	33	1.89
923463--923621	57	2.7	58	83	5	189	41	16	9	32	1.81
923632--923802	55	3.2	55	80	4	179	41	14	10	33	1.80
923651--923826	55	3.2	52	78	10	167	38	13	11	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
923784--923893	52	2.1	52	89	0	166	40	16	10	31	1.83
928254--928290	13	2.9	13	92	4	58	51	8	21	18	1.72
934332--934377	21	2.2	21	100	0	92	39	15	21	23	1.92
938026--938060	18	1.9	18	94	0	61	20	14	22	42	1.88
938031--938069	18	2.2	18	90	0	60	23	15	25	35	1.94
941267--941573	53	5.8	53	86	2	375	23	26	19	30	1.98
941969--942377	122	3.2	123	86	5	500	28	21	18	31	1.97
942200--942283	42	2.0	42	90	4	134	29	22	20	27	1.98
942272--942296	13	1.9	13	100	0	50	24	16	24	36	1.94
942365--942389	13	1.9	13	100	0	50	24	20	24	32	1.98
942255--942470	93	2.3	93	93	0	360	26	20	18	34	1.95
942428--942519	42	2.2	42	86	0	121	32	21	18	27	1.97
952983--953037	17	3.2	17	71	5	56	49	7	9	34	1.62
955250--955286	16	2.3	16	90	9	58	5	10	0	83	0.79
962533--962571	12	3.5	11	86	13	53	71	0	0	28	0.86
962853--963108	132	2.0	130	80	6	293	30	18	18	32	1.95
964011--964108	19	5.2	18	80	12	90	15	26	28	29	1.96
963991--964108	29	4.1	29	78	10	109	16	26	26	30	1.97
964010--964106	38	2.5	39	83	8	110	16	24	28	29	1.97
964105--964179	5	13.8	5	76	15	69	20	50	21	8	1.73
964104--964174	17	3.9	17	81	16	88	19	49	21	9	1.77
964105--964186	22	4.0	22	83	15	120	19	48	21	9	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
964104--964186	39	2.1	39	97	0	157	19	48	21	10	1.79
964127--964174	17	2.8	17	100	0	96	18	50	22	8	1.74
964176--964206	7	4.4	7	100	0	62	16	29	29	25	1.96
966276--966339	28	2.3	28	94	0	110	28	29	4	37	1.77
973889--973987	10	10.3	9	75	12	72	17	27	26	29	1.97
973890--973987	19	5.1	19	76	14	69	16	27	26	29	1.97
973888--973987	29	3.4	30	81	9	109	18	27	26	29	1.98
973984--974041	5	10.8	5	77	14	53	20	50	22	6	1.72
973984--974048	22	3.0	22	97	0	121	20	47	23	9	1.78
974038--974068	7	4.4	7	100	0	62	16	29	29	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13