genome.fa.s8056.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008056.1 Hibiscus syriacus cultivar Beakdansim tig00110551_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2370532

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  7  of  13  ( 1489 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1159012--1159097	35	2.4	36	92	5	140	36	19	5	38	1.76
1159223--1159265	22	2.0	22	90	0	68	25	39	16	18	1.91
1159455--1159602	80	1.9	80	95	0	269	29	15	17	37	1.91
1159719--1159786	20	3.4	20	91	4	102	36	26	17	19	1.94
1161846--1161884	14	2.8	14	92	0	60	38	0	15	46	1.46
1162001--1162053	20	2.7	20	81	0	61	47	26	15	11	1.79
1162097--1162225	20	6.4	20	90	0	195	28	20	20	30	1.98
1162263--1162514	133	1.9	132	95	2	461	42	15	13	27	1.85
1162567--1162601	18	1.9	18	94	0	61	17	2	25	54	1.57
1164822--1164868	24	2.0	24	95	0	85	34	17	21	27	1.95
1165683--1165810	20	6.4	20	91	0	175	26	19	25	28	1.99
1165759--1165849	20	4.6	20	88	2	96	26	18	18	36	1.94
1165846--1165912	21	3.2	21	91	0	107	38	20	23	16	1.92
1173549--1173575	13	2.1	13	100	0	54	37	7	7	48	1.59
1178311--1178355	23	2.0	23	95	0	81	31	11	17	40	1.85
1182066--1182108	15	3.1	14	87	9	61	48	9	6	34	1.62
1191337--1191387	20	2.5	20	100	0	102	19	35	25	19	1.95
1192981--1193552	286	2.0	286	97	0	1074	27	18	25	29	1.98
1194950--1195081	60	2.2	60	97	0	246	30	15	7	46	1.73
1195134--1195174	3	14.0	3	89	5	66	31	0	0	68	0.90
1195128--1195174	18	2.7	18	90	6	71	29	0	0	70	0.88
1200794--1201036	90	2.7	90	83	1	335	36	9	13	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1200794--1201064	90	3.0	89	80	6	314	37	9	12	40	1.76
1203386--1203455	11	6.4	11	76	11	54	45	0	2	51	1.16
1203394--1203454	17	3.6	17	82	4	79	47	0	3	49	1.18
1203390--1203454	6	11.5	6	75	15	50	47	0	3	49	1.17
1203412--1203476	28	2.2	28	83	8	76	50	0	4	44	1.22
1203934--1204005	3	24.0	3	100	0	144	33	0	0	66	0.92
1205099--1205633	46	11.6	46	90	0	784	19	23	14	42	1.88
1206913--1206998	18	4.8	18	80	0	100	29	31	19	19	1.97
1211647--1211679	16	2.0	17	94	5	59	51	0	0	48	1.00
1211855--1211884	15	1.9	16	93	6	53	63	3	0	33	1.11
1211812--1211883	32	2.3	31	76	11	74	59	4	1	34	1.25
1211801--1211909	47	2.3	45	81	7	128	59	4	0	34	1.24
1212138--1212198	31	2.0	31	90	6	97	42	11	22	22	1.86
1212475--1212524	22	2.3	20	78	15	55	28	4	0	68	1.08
1212562--1212607	22	2.1	22	84	8	58	32	4	2	60	1.28
1213061--1213107	24	2.0	24	83	4	60	59	2	4	34	1.29
1214297--1214376	42	1.9	41	92	2	133	23	13	11	51	1.74
1214534--1214584	21	2.2	24	86	10	72	49	0	0	50	1.00
1214639--1214733	29	3.2	28	80	14	95	46	0	1	52	1.07
1214655--1214732	29	2.7	30	84	7	99	44	0	0	55	0.99
1214749--1214918	90	1.9	86	81	9	200	50	4	0	45	1.23
1215073--1215139	30	2.3	30	92	2	109	34	16	7	41	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1215089--1215148	15	4.0	15	86	0	84	36	15	8	40	1.77
1216555--1216637	37	2.2	37	95	0	148	33	1	25	39	1.64
1217236--1217268	2	16.5	2	100	0	66	51	0	0	48	1.00
1220322--1220372	6	8.5	6	95	0	84	11	0	72	15	1.12
1220334--1220385	24	2.2	24	82	0	59	15	0	67	17	1.24
1224436--1224484	20	2.5	20	96	0	89	61	4	30	4	1.33
1229763--1229811	20	2.5	20	89	0	80	34	12	18	34	1.88
1236207--1236257	23	2.2	23	100	0	102	29	7	3	58	1.44
1238632--1238680	7	7.1	7	83	4	64	16	26	22	34	1.95
1242011--1242059	7	7.1	7	83	4	64	16	26	22	34	1.95
1244763--1244789	11	2.5	11	100	0	54	0	7	7	85	0.75
1244801--1244856	24	2.3	24	84	3	76	23	12	5	58	1.54
1245336--1245504	60	2.9	58	76	7	162	33	20	2	43	1.67
1245624--1245735	58	1.9	59	85	5	156	49	3	15	32	1.61
1246350--1246851	108	4.6	106	75	10	425	37	12	15	34	1.85
1249078--1249117	21	1.9	21	89	0	62	55	7	7	30	1.56
1252926--1252986	23	2.7	22	92	2	95	22	32	26	18	1.97
1252926--1253007	23	3.8	22	82	10	89	24	32	25	17	1.96
1256526--1256570	22	2.0	22	86	8	63	42	2	11	44	1.52
1256535--1256577	22	2.0	22	85	0	59	41	4	11	41	1.62
1256542--1256722	36	5.0	36	75	16	160	46	2	8	43	1.46
1256550--1256708	73	2.1	75	89	4	243	47	2	7	42	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1256550--1256708	38	4.3	37	77	13	150	47	2	7	42	1.45
1256685--1256773	21	4.5	21	70	23	77	44	3	8	42	1.52
1256651--1256800	58	2.5	57	79	14	153	46	2	8	42	1.48
1256823--1256875	8	6.1	9	74	22	51	41	0	1	56	1.10
1258592--1258635	19	2.4	18	77	7	52	38	20	6	34	1.79
1258645--1258680	17	2.1	17	89	0	54	41	5	8	44	1.58
1258967--1259038	23	3.1	23	87	0	90	33	12	16	37	1.86
1259013--1259178	75	2.2	75	86	0	233	35	10	9	43	1.72
1259163--1259234	23	3.1	23	87	0	99	36	13	15	34	1.87
1258918--1259316	196	2.0	196	87	2	570	34	13	12	40	1.82
1263139--1263186	16	3.2	16	68	31	52	27	6	14	52	1.66
1263145--1263193	16	3.3	16	69	30	54	28	6	16	48	1.69
1263128--1263197	28	2.5	28	95	2	124	27	5	12	54	1.61
1267881--1267936	22	2.5	23	77	5	62	35	14	17	32	1.90
1268720--1268767	23	2.1	23	100	0	96	31	8	14	45	1.74
1273963--1274019	30	1.9	30	85	7	80	26	21	19	33	1.97
1275187--1275231	18	2.5	18	92	0	72	33	6	13	46	1.69
1279399--1279452	23	2.3	23	81	6	74	35	22	22	20	1.96
1281223--1281273	19	2.7	19	79	8	61	25	13	35	25	1.93
1281131--1281275	65	2.2	65	84	3	177	28	15	25	31	1.95
1287739--1287778	21	1.9	21	85	10	55	35	10	2	52	1.48
1289703--1289932	64	3.6	64	79	2	219	27	17	25	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1289831--1289881	19	2.7	19	85	8	70	25	15	35	23	1.94
1289724--1289932	65	3.2	63	81	8	199	28	16	25	29	1.97
1295872--1295924	25	2.2	25	86	3	72	35	22	20	20	1.96
1295872--1295934	24	2.6	25	82	2	74	33	23	22	20	1.97
1295931--1295996	23	2.9	23	88	0	87	31	22	19	25	1.98
1300763--1300933	72	2.4	73	90	2	265	29	12	21	36	1.90
1300893--1301015	57	2.2	57	93	0	210	19	17	21	41	1.90
1300981--1301039	20	3.0	20	82	0	82	15	16	23	44	1.86
1306036--1306081	12	3.8	12	75	18	51	63	2	17	17	1.42
1306034--1306086	23	2.2	24	93	6	99	60	5	15	18	1.54
1314058--1314686	55	11.7	55	88	5	903	27	27	15	29	1.96
1314058--1314686	108	5.8	110	88	5	896	27	27	15	29	1.96
1314058--1314686	214	2.9	214	91	4	959	27	27	15	29	1.96
1315663--1315703	18	2.2	19	86	4	57	12	9	0	78	0.98
1331219--1331334	57	2.0	57	96	0	214	42	18	19	19	1.90
1332061--1332108	21	2.3	21	85	0	60	41	16	22	18	1.90
1334889--1334970	39	2.1	38	95	4	155	47	29	13	9	1.75
1335659--1335709	15	3.3	15	76	13	50	27	0	3	68	1.07
1335791--1335817	14	1.9	14	100	0	54	18	0	7	74	1.05
1335672--1335911	110	2.2	111	85	3	322	31	5	4	58	1.41
1336059--1336103	1	45.0	1	81	0	54	2	6	0	91	0.50
1336059--1336098	17	2.3	17	91	4	62	2	5	0	92	0.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1336059--1336114	5	11.8	5	87	9	57	1	10	0	87	0.62
1336059--1336115	11	5.4	11	85	6	64	1	10	0	87	0.61
1336080--1336144	26	2.5	25	82	7	67	7	15	0	76	0.99
1336056--1336134	11	8.0	10	78	16	51	6	11	0	82	0.84
1340043--1340127	34	2.5	34	96	0	152	61	0	0	38	0.96
1340114--1340143	2	15.5	2	93	6	53	50	0	0	50	1.00
1346756--1346827	35	2.1	35	100	0	144	45	15	22	16	1.84
1347125--1347150	13	2.0	13	100	0	52	84	0	15	0	0.62
1347206--1347253	22	2.2	21	81	3	60	79	4	16	0	0.89
1348124--1348713	124	4.8	124	92	0	923	31	24	18	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13