genome.fa.s8056.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008056.1 Hibiscus syriacus cultivar Beakdansim tig00110551_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2370532

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  13  of  13  ( 1489 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2294315--2294530	113	1.9	112	93	0	369	28	18	15	37	1.92
2295883--2295917	18	1.9	18	94	0	61	60	5	2	31	1.35
2303470--2303501	15	2.1	15	94	0	55	46	9	18	25	1.79
2306799--2306881	30	3.0	28	71	13	73	65	0	1	33	1.01
2307034--2307078	18	2.5	18	92	0	72	53	0	6	40	1.27
2307819--2308321	108	4.5	107	73	13	386	38	13	16	31	1.87
2307742--2308348	226	2.7	226	90	2	963	38	13	15	32	1.86
2308546--2308829	7	40.1	7	77	17	252	41	1	3	53	1.27
2308554--2308829	110	2.4	116	81	13	317	41	1	3	53	1.26
2308667--2308851	21	8.5	22	75	17	74	38	1	2	57	1.20
2309614--2309684	24	3.0	24	93	0	124	18	26	43	11	1.83
2311147--2311183	16	2.2	18	90	9	60	8	8	5	78	1.09
2312774--2312822	20	2.5	20	96	0	89	36	8	18	36	1.81
2322214--2322271	21	2.8	21	84	5	73	32	27	15	24	1.95
2323806--2323838	2	16.5	2	100	0	66	48	0	0	51	1.00
2324272--2324356	7	12.3	7	86	10	61	37	0	15	47	1.46
2324274--2324325	7	7.6	7	93	4	79	34	0	23	42	1.54
2324287--2324355	21	3.3	21	82	8	70	34	0	15	49	1.46
2324322--2324405	2	45.5	2	76	21	69	42	0	2	54	1.13
2324322--2324480	16	9.9	16	69	23	86	41	0	5	52	1.28
2324329--2324464	16	8.3	16	72	18	111	42	0	4	52	1.21
2324322--2324414	25	4.1	23	81	13	97	43	0	2	54	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2324322--2324414	7	12.4	7	76	18	82	43	0	2	54	1.12
2324322--2324413	19	4.7	22	67	24	55	43	0	2	54	1.12
2324468--2325425	5	194.6	5	96	3	1779	19	0	20	60	1.37
2325900--2325948	22	2.2	22	85	0	62	53	24	10	12	1.69
2327012--2327780	200	3.9	198	82	4	870	34	12	12	40	1.82
2327785--2327862	36	2.2	36	88	4	113	37	14	11	37	1.82
2328752--2329180	187	2.3	188	82	7	519	31	15	13	40	1.85
2329223--2329275	20	2.7	19	82	5	61	32	16	7	43	1.76
2329427--2329494	34	2.0	34	97	0	127	36	17	7	38	1.78
2331609--2331664	23	2.4	22	76	8	58	57	3	3	35	1.34
2331643--2331676	18	1.9	17	88	5	50	58	0	2	38	1.13
2331672--2331708	17	2.2	17	90	0	56	45	2	0	51	1.15
2332181--2332237	23	2.5	21	73	15	51	40	3	3	52	1.35
2333342--2333387	24	1.9	24	86	0	65	21	30	19	28	1.98
2334029--2334081	27	2.0	27	88	7	81	43	11	15	30	1.81
2335158--2335261	37	2.9	37	91	2	158	29	19	19	31	1.96
2355800--2355844	10	4.4	10	77	5	54	57	6	6	28	1.50
2358156--2358213	19	3.0	20	80	14	68	65	1	1	31	1.13
2358562--2358624	29	2.1	29	82	8	74	26	14	30	28	1.95
2367294--2367503	95	2.2	95	87	1	296	35	14	24	25	1.94
2367845--2368122	57	4.9	56	88	4	373	32	11	19	36	1.87
2368469--2368637	68	2.5	68	89	0	248	30	13	24	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2368651--2369343	81	8.8	72	84	6	440	38	12	21	28	1.89
2368721--2369442	161	4.5	162	86	2	986	38	12	20	28	1.89
2368588--2369457	242	3.6	241	86	3	1156	37	12	21	28	1.90
2368721--2369442	81	8.9	81	87	0	982	38	12	20	28	1.89
2369623--2369678	2	28.0	2	100	0	112	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13

The End!