genome.fa.s8056.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008056.1 Hibiscus syriacus cultivar Beakdansim tig00110551_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2370532

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  11  of  13  ( 1489 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1851020--1851114	21	4.7	20	80	7	77	22	23	24	30	1.99
1851047--1851096	21	2.4	21	96	0	91	26	20	26	28	1.99
1851195--1851254	21	2.9	20	78	7	66	38	35	10	16	1.82
1852393--1852440	19	2.5	20	82	3	62	52	6	12	29	1.63
1853702--1853761	31	2.0	29	87	6	84	35	6	13	45	1.70
1853702--1853761	30	2.0	30	87	6	86	35	6	13	45	1.70
1853939--1854013	21	3.6	21	87	5	91	24	25	26	24	2.00
1854741--1854781	21	1.9	22	85	14	59	39	34	7	19	1.80
1856021--1856052	15	2.1	15	94	0	55	18	3	6	71	1.20
1857012--1857080	26	2.7	26	82	8	70	27	4	1	66	1.19
1857010--1857069	28	2.2	28	79	8	70	28	5	1	65	1.23
1862374--1862415	11	3.9	11	96	3	77	76	0	23	0	0.79
1862361--1862415	11	5.7	9	87	12	58	76	0	23	0	0.79
1862362--1862415	21	2.7	21	86	13	78	77	0	22	0	0.76
1862868--1862933	32	2.1	32	91	5	107	46	16	15	21	1.83
1869827--1870016	95	2.0	95	100	0	380	31	21	22	25	1.98
1874545--1874585	18	2.3	18	82	0	55	26	26	29	17	1.97
1877733--1877847	50	2.3	51	83	10	146	41	5	6	46	1.51
1877830--1877888	29	2.1	28	81	15	68	45	3	1	49	1.28
1878864--1878943	40	2.0	40	97	0	151	31	7	15	46	1.73
1879472--1879598	53	2.4	53	97	0	245	25	8	20	45	1.79
1879566--1879601	11	3.2	11	92	4	54	25	2	22	50	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1879708--1879758	11	4.2	11	79	20	57	45	0	1	52	1.12
1881040--1881066	14	1.9	14	100	0	54	37	7	0	55	1.28
1882318--1882376	6	10.0	6	83	5	68	66	5	0	28	1.13
1882320--1882364	9	4.9	10	84	15	62	64	6	0	28	1.19
1882829--1882936	28	3.9	27	83	7	119	49	12	12	25	1.77
1883518--1883605	36	2.3	38	80	9	99	39	9	18	32	1.82
1887018--1887151	70	1.9	71	85	1	189	23	14	25	37	1.92
1889317--1889415	49	2.0	50	98	2	191	58	13	12	16	1.63
1890896--1890920	9	2.8	9	100	0	50	16	0	0	84	0.63
1891402--1891464	6	10.7	6	84	5	76	65	3	0	31	1.09
1891402--1891464	9	7.1	9	84	8	76	65	3	0	31	1.09
1891396--1891464	15	4.8	14	84	8	70	66	2	0	30	1.06
1897394--1897456	2	31.5	2	100	0	126	49	0	0	50	1.00
1897523--1897692	60	2.9	58	77	11	157	36	17	3	42	1.67
1897811--1897979	60	2.8	60	78	5	155	44	2	17	34	1.64
1898243--1898302	23	2.7	23	78	16	65	51	1	3	43	1.28
1898247--1898294	23	2.1	23	88	3	71	52	2	2	43	1.24
1899612--1899684	29	2.5	29	86	8	87	52	2	15	30	1.57
1901677--1901732	24	2.5	22	85	5	67	25	28	21	25	1.99
1901736--1901835	32	3.2	32	90	8	147	30	19	25	26	1.98
1902254--1902288	18	2.1	17	89	10	54	22	17	5	54	1.64
1902685--1902729	20	2.2	20	92	0	72	28	20	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1902692--1902735	20	2.2	20	91	0	70	31	20	20	27	1.97
1906892--1906926	18	2.1	17	89	10	54	22	17	5	54	1.64
1910246--1910305	24	2.6	24	84	7	72	28	26	21	23	1.99
1910286--1910375	32	2.9	30	83	6	117	30	22	22	25	1.99
1912024--1912471	139	3.2	139	78	3	488	25	16	26	31	1.97
1912591--1913025	67	6.5	67	83	5	488	37	13	18	30	1.89
1912762--1912940	30	5.5	30	65	21	101	37	12	19	29	1.89
1913153--1913237	36	2.4	36	86	4	118	42	10	15	31	1.81
1913252--1913397	66	2.2	66	82	7	170	40	12	17	29	1.86
1914906--1915028	31	4.0	31	89	0	183	37	20	17	25	1.93
1918018--1918060	22	2.0	22	86	9	61	62	2	9	25	1.37
1927713--1927771	19	3.2	18	81	13	68	81	6	10	1	0.94
1927719--1927780	25	2.4	26	81	5	72	79	4	14	1	0.98
1927713--1927771	18	3.3	18	88	6	84	81	6	10	1	0.94
1928373--1928449	22	3.5	22	82	7	102	42	23	10	23	1.84
1929197--1929334	37	3.8	36	80	6	145	26	19	13	39	1.89
1929335--1930714	106	13.0	106	90	1	2122	33	25	18	22	1.96
1944477--1944525	23	2.1	23	96	0	89	42	4	26	26	1.73
1954278--1954313	2	18.0	2	100	0	72	50	0	0	50	1.00
1954410--1954444	15	2.4	15	90	4	54	40	17	0	42	1.49
1954603--1954738	23	5.9	23	87	0	182	33	24	25	16	1.96
1954843--1954908	14	4.6	14	70	20	55	39	18	7	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1961516--1961579	23	2.8	23	85	4	85	17	28	31	23	1.97
1964247--1964298	21	2.5	21	96	0	95	55	11	23	9	1.64
1969016--1969104	33	2.7	32	85	3	106	19	6	37	37	1.78
1971630--1971684	22	2.5	22	84	0	74	29	20	10	40	1.86
1971648--1972230	81	7.2	81	86	3	744	33	20	10	34	1.88
1971648--1972230	243	2.4	242	87	2	828	33	20	10	34	1.88
1979776--1979876	35	2.8	36	89	4	150	33	17	11	36	1.87
1980752--1980791	20	2.0	20	100	0	80	60	0	15	25	1.35
1983939--1983998	31	1.9	31	96	0	111	35	10	26	28	1.89
1984554--1984661	35	3.0	35	90	9	173	35	16	14	33	1.90
1985017--1985096	35	2.2	36	91	8	137	32	13	17	36	1.89
1987496--1987574	26	3.0	26	88	5	115	48	1	6	44	1.36
1987498--1987575	25	3.1	24	85	7	102	47	1	6	44	1.36
1987583--1987617	2	17.5	2	100	0	70	51	0	0	48	1.00
1987599--1987768	37	4.3	39	85	9	220	46	2	5	45	1.41
1987810--1987864	19	2.9	19	84	12	62	27	1	0	70	0.97
1988989--1989038	6	8.3	6	82	8	57	20	2	0	78	0.86
1988965--1989037	9	7.9	9	79	15	78	17	4	0	78	0.91
1996079--1996137	17	3.4	17	72	21	59	15	15	5	64	1.45
1996066--1996145	35	2.5	30	75	19	81	16	16	3	63	1.44
1996079--1996149	35	2.0	35	91	0	115	16	16	4	61	1.49
2001264--2001653	39	10.1	38	88	5	522	46	3	6	43	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2001394--2001418	12	2.1	12	100	0	50	40	0	8	52	1.31
2001517--2001570	28	1.9	28	85	7	74	46	3	7	42	1.49
2002815--2002878	12	5.4	12	73	15	53	20	1	0	78	0.84
2003567--2003640	2	37.0	2	100	0	148	50	0	0	50	1.00
2004826--2004994	65	2.6	65	78	6	157	33	16	18	31	1.94
2007271--2007327	21	2.7	21	78	10	71	22	21	22	33	1.97
2015163--2015220	29	2.0	30	83	10	75	25	18	3	51	1.62
2022169--2022639	224	2.1	222	93	3	797	43	8	7	40	1.63
2022918--2022964	20	2.4	19	89	10	76	55	10	17	17	1.69
2022706--2023178	181	2.6	182	90	1	698	42	14	17	26	1.87
2023099--2023145	20	2.4	19	82	10	67	53	10	17	19	1.72
2023108--2023150	20	2.3	19	88	11	63	51	11	16	20	1.75
2024249--2024321	23	3.2	23	88	0	101	34	4	21	39	1.73
2025075--2025163	31	2.9	31	78	6	108	41	2	7	48	1.45
2029656--2029792	60	2.3	60	85	6	174	31	21	5	41	1.76
2029936--2030092	60	2.6	60	83	7	167	40	5	20	33	1.74
2036460--2036514	23	2.3	24	93	3	94	29	16	14	40	1.88
2038271--2038310	20	2.0	20	90	4	64	50	10	20	20	1.76
2042134--2042231	3	33.3	3	85	4	83	33	10	0	56	1.33
2048179--2048218	21	1.9	21	94	0	71	25	27	22	25	2.00
2048897--2049021	31	4.0	31	88	7	175	38	20	19	22	1.94
2048898--2049020	62	2.0	62	90	6	196	39	18	19	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2052996--2053037	21	2.0	21	90	0	66	26	26	21	26	1.99
2053731--2053853	31	4.0	30	79	15	126	38	19	18	23	1.93
2053731--2053855	62	2.0	62	90	3	198	38	20	18	23	1.93
2053746--2053854	31	3.5	31	87	2	157	40	18	19	22	1.92
2064189--2064268	36	2.1	36	84	9	97	67	0	17	15	1.23
2065823--2066461	128	5.0	129	77	13	561	30	24	17	27	1.97
2065819--2066477	261	2.6	253	80	10	691	30	24	16	27	1.97
2066631--2066795	3	54.7	3	83	12	169	34	4	0	61	1.16
2069698--2070395	354	2.0	355	96	2	1298	30	18	23	27	1.97
2076051--2076228	64	2.8	64	80	3	196	25	16	26	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13