genome.fa.s8056.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008056.1 Hibiscus syriacus cultivar Beakdansim tig00110551_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2370532

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  10  of  13  ( 1489 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1696557--1697291	81	9.1	81	89	0	1015	34	10	22	32	1.88
1700969--1701168	76	2.6	77	88	3	280	23	33	23	19	1.97
1706646--1706706	23	2.9	19	81	11	59	21	36	26	16	1.94
1709554--1709613	29	2.1	28	84	3	75	76	3	8	11	1.12
1709605--1709671	1	67.0	1	75	0	53	86	5	7	0	0.70
1709589--1709670	7	11.7	7	83	11	71	84	7	6	2	0.86
1709579--1709656	8	9.8	8	78	13	54	84	7	5	2	0.84
1709605--1709654	19	2.7	17	82	17	64	88	8	4	0	0.64
1709590--1709656	33	2.0	34	88	5	100	85	8	2	2	0.81
1709577--1709671	8	11.1	8	73	20	50	83	6	8	2	0.89
1711804--1712215	54	7.6	54	75	11	270	33	8	16	41	1.78
1711816--1712190	163	2.3	163	79	7	375	34	7	15	42	1.75
1711902--1712216	109	2.9	108	80	7	320	33	7	17	40	1.79
1712067--1712248	54	3.3	54	82	5	161	30	9	20	39	1.84
1713131--1713162	14	2.1	16	88	11	50	31	9	12	46	1.73
1714023--1714105	41	2.0	41	85	4	112	31	27	16	24	1.97
1713721--1714317	202	3.0	201	84	3	745	34	18	19	26	1.95
1714275--1714517	42	5.8	42	80	0	211	32	24	14	28	1.94
1714801--1714843	3	14.7	3	81	13	54	72	0	0	27	0.85
1723650--1723719	20	3.2	22	76	17	83	51	0	1	47	1.09
1724985--1725043	31	1.9	31	92	0	100	40	6	10	42	1.65
1725072--1725141	22	3.2	21	80	11	52	54	12	0	32	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1725090--1725327	54	4.4	54	91	1	395	53	12	0	34	1.38
1725109--1725328	32	7.8	32	71	27	210	53	12	0	34	1.39
1725134--1725177	22	2.0	22	82	8	54	54	4	0	40	1.21
1725068--1725132	22	3.0	22	90	0	103	52	12	0	35	1.39
1725171--1725250	23	4.4	18	64	25	51	57	13	0	28	1.37
1725146--1725194	22	2.2	22	85	3	62	55	12	0	32	1.37
1725201--1725303	23	4.1	24	71	19	84	57	12	0	30	1.36
1725090--1725349	109	2.4	109	92	2	423	53	13	0	33	1.40
1725255--1725303	22	2.2	22	85	3	62	55	12	0	32	1.37
1725309--1725383	22	3.2	23	71	17	73	54	16	0	29	1.42
1725355--1725452	32	3.4	31	71	26	106	54	9	0	36	1.33
1725378--1725452	22	4.2	18	64	29	52	56	6	0	37	1.26
1725387--1725429	22	2.0	22	90	0	68	53	9	0	37	1.33
1725338--1725452	54	2.1	54	95	0	203	53	9	0	36	1.34
1725432--1725497	15	4.5	15	94	1	116	54	0	0	45	0.99
1727257--1727292	17	2.0	18	89	10	56	61	5	22	11	1.50
1727255--1727303	19	2.5	19	81	18	57	57	6	24	12	1.58
1728432--1728460	14	2.0	15	93	6	51	27	0	3	68	1.05
1732064--1732108	20	2.3	20	80	3	56	48	2	2	46	1.26
1739080--1739117	20	1.9	20	94	0	67	18	15	28	36	1.92
1742549--1742592	20	2.2	20	87	0	61	15	11	29	43	1.82
1742559--1742609	20	2.5	21	84	12	70	15	7	37	39	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1743332--1743366	18	1.9	18	88	0	52	31	0	0	68	0.90
1743819--1743853	18	2.0	17	88	5	52	48	0	0	51	1.00
1744675--1744829	20	7.7	19	71	16	57	31	25	16	26	1.96
1744671--1744767	40	2.4	39	77	5	104	31	24	15	27	1.95
1744755--1744843	40	2.2	40	86	6	117	30	29	16	23	1.97
1744776--1744843	20	3.4	20	93	0	109	26	30	17	25	1.97
1748207--1748669	231	2.0	230	97	2	869	46	11	14	27	1.78
1748689--1748727	18	2.2	18	90	0	60	12	35	20	30	1.90
1750602--1750823	111	2.0	111	98	0	426	45	11	8	35	1.70
1751111--1751231	50	2.4	50	80	5	145	20	25	35	18	1.95
1753803--1753978	51	3.7	49	79	12	181	30	21	8	39	1.83
1754085--1754203	40	3.0	40	91	7	208	32	26	18	22	1.97
1761157--1761273	40	3.1	38	84	12	150	34	24	16	24	1.95
1764475--1764504	2	15.5	2	93	6	53	53	0	0	46	1.00
1768159--1768201	18	2.4	18	96	0	77	23	23	41	11	1.87
1779113--1779199	31	2.8	30	81	10	95	54	3	1	41	1.25
1779108--1779175	19	3.5	20	73	15	54	54	1	2	41	1.24
1779310--1779338	10	2.9	10	100	0	58	31	0	27	41	1.56
1784266--1784309	19	2.4	18	88	3	61	20	6	0	72	1.07
1784680--1784710	6	5.2	6	100	0	62	35	0	0	64	0.94
1791309--1791444	59	2.3	59	79	2	166	29	17	23	29	1.97
1791545--1791670	47	2.8	45	89	5	191	38	7	23	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1796355--1796379	6	4.2	6	100	0	50	16	16	36	32	1.90
1800318--1800346	6	4.8	6	100	0	58	17	17	34	31	1.93
1801457--1801532	6	13.3	6	71	10	52	75	1	18	5	1.07
1801493--1801550	18	3.4	18	77	18	70	74	0	18	6	1.04
1801472--1801524	22	2.3	23	84	12	74	73	1	18	5	1.12
1801472--1801548	27	2.8	28	83	16	81	72	1	19	6	1.13
1801454--1801548	33	2.8	34	86	12	124	73	1	18	6	1.10
1801454--1801550	35	2.8	37	82	14	118	74	1	18	6	1.09
1801505--1801550	15	3.3	14	74	20	51	73	0	19	6	1.04
1805517--1805642	47	2.8	45	89	5	191	38	7	23	30	1.83
1809184--1809785	270	2.3	263	87	5	845	34	22	17	25	1.96
1810990--1811083	5	18.4	5	78	10	93	15	4	1	78	0.96
1810990--1811083	33	2.9	32	85	6	127	15	4	1	78	0.96
1811009--1811112	43	2.3	44	87	9	149	16	3	0	78	0.94
1811042--1811112	30	2.6	29	81	16	80	18	2	0	78	0.86
1812084--1812162	21	3.7	21	94	1	131	15	24	17	43	1.87
1812078--1812172	21	4.5	21	89	2	120	17	25	18	37	1.93
1812078--1812172	42	2.3	42	85	3	138	17	25	18	37	1.93
1812162--1812213	21	2.5	21	87	3	70	38	17	23	21	1.93
1812202--1812336	20	6.7	20	83	5	128	32	25	17	23	1.97
1812199--1812276	41	1.9	41	89	0	120	38	24	16	20	1.93
1812882--1812957	20	3.8	20	96	0	134	39	23	22	14	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1812863--1812969	40	3.0	34	73	15	97	38	22	24	14	1.92
1812995--1813059	19	3.4	19	100	0	130	15	20	16	47	1.82
1814626--1814735	40	2.6	41	84	5	132	23	17	37	21	1.94
1814630--1814724	21	4.7	20	76	7	84	23	18	34	23	1.96
1815073--1815145	20	3.7	20	90	0	74	34	27	16	21	1.95
1815079--1815164	40	2.2	40	85	4	111	34	26	20	17	1.95
1815099--1815185	20	4.4	20	88	1	122	36	24	24	14	1.93
1815174--1815237	14	4.3	14	73	19	58	53	23	14	9	1.69
1815158--1815237	33	2.4	33	95	0	142	50	22	16	11	1.76
1815158--1815248	33	2.8	33	91	3	121	49	24	15	10	1.76
1815244--1815340	19	5.6	19	71	22	97	12	19	21	46	1.83
1815266--1815324	14	3.9	14	76	20	64	10	16	23	49	1.77
1815249--1815340	33	2.8	33	98	0	175	11	18	21	47	1.80
1815325--1815379	20	2.8	19	83	8	65	16	23	23	36	1.94
1815920--1815967	18	2.7	18	93	0	87	14	12	45	27	1.81
1817288--1817346	20	3.0	20	87	0	73	44	22	18	15	1.87
1817609--1817652	22	2.0	22	86	8	63	18	11	45	25	1.82
1817846--1817910	20	3.2	20	72	12	69	21	18	24	35	1.96
1817819--1817916	41	2.4	41	91	0	151	22	16	21	39	1.92
1817846--1817934	41	2.2	41	83	4	108	23	19	21	35	1.95
1819184--1819220	17	2.1	18	95	5	67	37	0	0	62	0.96
1827691--1827815	31	4.0	31	96	2	225	38	24	19	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1828443--1828663	64	3.4	65	82	3	225	27	19	20	33	1.96
1831794--1831914	31	4.0	31	89	9	189	38	23	18	19	1.93
1831797--1831913	59	2.0	58	93	5	200	39	23	17	19	1.92
1832561--1832785	64	3.5	64	81	5	233	27	19	20	33	1.96
1833858--1833901	22	2.0	22	82	8	54	47	0	2	50	1.13
1835904--1837281	689	2.0	688	99	0	2706	37	18	16	27	1.93
1837803--1837840	2	19.0	2	100	0	76	50	0	0	50	1.00
1837869--1837927	13	4.8	13	74	18	54	47	1	0	50	1.11
1837874--1837918	23	2.0	23	100	0	90	48	2	0	48	1.13
1850783--1850842	31	1.9	32	93	6	106	35	5	16	43	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13