genome.fa.s8061.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008061.1 Hibiscus syriacus cultivar Beakdansim tig00110556_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5800122

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  1  of  26  ( 3118 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11103--11150	24	1.9	25	91	8	80	66	0	0	33	0.92
14657--14696	17	2.2	19	86	8	57	67	5	0	27	1.11
20916--20996	37	2.2	38	78	17	89	53	3	0	43	1.18
23332--23399	34	2.0	34	100	0	136	44	20	8	26	1.81
29423--31141	106	16.4	106	93	2	2805	32	25	18	23	1.97
29423--31141	421	4.1	423	93	2	2839	32	25	18	23	1.97
33760--33827	30	2.3	30	87	5	93	27	7	11	52	1.64
33775--33839	30	2.2	30	88	0	94	23	9	12	55	1.65
33909--33955	24	1.9	25	83	12	62	19	17	8	55	1.67
36650--36717	30	2.4	30	80	7	79	44	10	8	36	1.70
39763--39811	25	2.0	25	84	8	64	44	12	4	38	1.61
39770--39802	12	2.6	13	85	9	50	48	12	0	39	1.40
42118--42202	9	10.0	9	76	21	78	65	0	0	34	0.93
42124--42193	3	23.3	3	76	21	67	65	0	0	34	0.93
42124--42207	12	7.4	12	73	20	74	64	0	1	34	1.02
42121--42207	17	5.2	16	76	19	88	64	0	1	34	1.01
42118--42241	9	14.3	9	71	16	57	62	0	1	36	1.05
42278--42328	14	3.6	14	79	10	50	56	1	0	41	1.10
43734--43769	15	2.4	15	90	0	54	55	0	25	19	1.43
43929--44014	13	7.2	12	72	22	58	29	3	37	30	1.74
43911--44015	36	2.9	36	94	1	176	29	4	35	30	1.78
46535--46574	19	2.1	19	85	0	53	5	17	50	27	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46562--46608	10	5.0	9	87	10	58	29	31	25	12	1.93
53772--53796	13	1.9	13	100	0	50	24	28	32	16	1.96
53801--53872	5	14.4	5	77	11	76	5	20	51	22	1.68
53792--53841	17	3.1	17	80	5	59	14	22	46	18	1.84
53816--53869	14	3.8	14	90	2	81	3	18	55	22	1.58
53801--53872	19	3.6	19	78	12	74	5	20	51	22	1.68
56909--56972	20	3.2	21	65	19	55	34	3	0	62	1.11
56916--56976	19	3.2	19	76	17	72	36	3	0	60	1.13
58956--58980	13	1.9	13	100	0	50	40	8	36	16	1.77
63540--63574	15	2.3	15	85	0	52	31	31	20	17	1.95
64513--64564	27	2.0	27	84	3	70	34	17	0	48	1.48
68477--68517	18	2.3	18	91	4	66	63	2	4	29	1.28
69753--69797	17	2.5	17	82	10	54	60	0	4	35	1.17
77124--77184	31	2.0	31	93	0	104	42	14	18	24	1.88
78784--78861	31	2.5	31	91	0	120	37	11	24	26	1.90
89315--89358	21	2.1	21	91	0	70	29	25	22	22	1.99
90769--90820	7	6.7	7	83	12	59	40	0	1	57	1.10
90769--90833	16	4.1	16	83	11	73	40	0	3	56	1.15
90770--90840	9	8.8	8	76	14	58	38	0	2	59	1.12
90769--90820	17	3.3	16	84	10	72	40	0	1	57	1.10
90770--90832	33	2.0	31	84	12	83	39	0	3	57	1.15
92896--92938	3	14.3	3	80	0	50	39	30	25	4	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101048--101096	16	2.9	16	90	6	71	38	6	28	26	1.80
101675--101738	32	2.0	32	82	14	78	40	26	6	26	1.79
102593--102642	27	1.9	25	84	8	64	54	6	0	40	1.25
106751--106790	18	2.2	18	95	0	71	40	2	5	52	1.37
107772--107806	16	2.2	16	89	0	52	74	0	8	17	1.06
108132--108247	21	5.6	21	69	10	69	33	24	19	22	1.97
108235--108502	20	13.5	20	73	12	144	39	23	18	18	1.92
108296--108408	21	5.4	21	82	3	131	38	24	18	17	1.92
108357--108466	54	2.0	54	82	0	130	40	22	19	17	1.91
108336--108486	74	2.0	75	89	1	232	41	22	18	17	1.90
108296--108505	40	5.3	40	81	8	225	39	23	19	18	1.92
109364--109417	24	2.2	24	93	0	90	20	18	20	40	1.91
111998--112050	19	2.7	19	79	2	61	41	20	22	15	1.89
112023--112116	33	2.8	33	90	0	152	44	18	22	14	1.86
111969--112083	53	2.2	52	81	4	133	43	17	20	18	1.88
111929--112120	86	2.2	84	80	5	206	42	18	21	17	1.89
112116--112192	19	4.3	19	79	15	92	14	15	24	45	1.83
112131--112224	33	2.8	32	90	3	134	12	19	22	45	1.83
112116--112224	19	6.3	17	73	20	68	13	18	22	44	1.85
113696--113818	42	2.9	41	79	7	113	22	17	36	22	1.95
115782--115857	40	1.9	39	89	2	116	47	19	21	11	1.81
115782--115891	20	5.9	19	74	14	104	47	20	20	11	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115790--115908	33	3.4	33	82	10	130	45	21	21	11	1.83
115904--116010	19	5.7	19	72	21	84	10	18	20	50	1.76
115947--116010	21	3.1	21	84	6	87	10	20	17	51	1.75
115915--116025	20	5.8	19	75	17	90	11	18	18	51	1.76
116589--116862	20	13.4	20	84	3	350	20	19	24	35	1.95
116589--116862	41	6.7	41	92	2	365	20	19	24	35	1.95
116871--117007	21	6.7	20	78	12	91	21	19	21	37	1.94
116952--117009	21	2.8	21	97	0	107	18	24	18	37	1.94
117160--117201	18	2.4	17	80	15	50	54	0	9	35	1.33
117214--117254	15	2.7	16	81	11	50	70	2	0	26	0.99
119156--119413	110	2.4	110	85	6	341	23	16	24	35	1.95
119474--119580	32	3.2	32	63	17	81	22	25	28	24	2.00
119422--119583	69	2.3	69	98	0	315	20	27	27	24	1.99
120552--120616	7	8.7	7	82	12	60	3	12	1	83	0.84
120552--120618	8	8.8	8	77	11	61	2	13	1	82	0.86
131168--131203	2	18.0	2	100	0	72	50	0	0	50	1.00
131177--131236	18	3.4	17	80	15	52	53	0	6	40	1.27
131227--131274	22	2.2	22	81	7	53	64	6	0	29	1.18
132482--132538	27	2.2	26	79	11	64	50	12	1	35	1.50
138013--138041	2	14.5	2	100	0	58	0	51	0	48	1.00
138292--138326	2	17.5	2	93	0	61	45	0	0	54	0.99
138283--138327	10	4.5	10	88	5	56	42	0	2	55	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150525--150575	24	2.0	24	81	11	57	41	1	0	56	1.10
150532--150585	21	2.6	22	77	13	53	40	1	0	57	1.09
159926--159981	17	3.0	19	72	17	55	58	25	8	7	1.53
159918--159967	25	1.9	25	84	8	64	60	24	8	8	1.52
163870--165241	105	13.0	105	88	2	1858	33	24	18	23	1.97
163870--165241	421	3.3	419	88	2	1921	33	24	18	23	1.97
163870--165241	211	6.5	211	89	1	1855	33	24	18	23	1.97
166765--166824	12	4.7	14	74	15	51	43	0	0	56	0.99
169298--169798	256	1.9	259	98	1	972	31	10	26	31	1.90
181562--181631	22	3.3	22	70	20	60	21	12	0	65	1.25
181582--181634	23	2.3	24	78	18	60	20	13	0	66	1.25
181787--181823	3	12.7	3	88	5	58	29	0	2	67	1.04
181805--181942	9	14.7	9	68	17	50	17	8	1	72	1.17
181817--181897	25	3.2	24	68	23	60	16	9	0	74	1.07
181839--181893	24	2.2	25	81	12	69	14	10	0	74	1.07
184832--184895	14	4.8	14	71	28	59	78	6	14	1	1.02
184820--184882	24	2.6	25	85	11	80	79	6	12	1	0.99
184944--185045	51	2.0	51	100	0	204	33	17	21	27	1.96
186723--186805	41	2.0	41	86	4	114	30	28	16	24	1.97
187336--188129	84	9.5	83	81	2	809	31	23	18	25	1.97
187336--188129	168	4.7	168	87	0	1052	31	23	18	25	1.97
188659--188766	37	2.9	37	94	0	180	43	12	11	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
189464--189500	3	12.7	3	88	5	58	29	0	2	67	1.04
189462--189527	21	3.2	20	78	19	57	24	4	1	69	1.15
189520--189568	18	2.7	18	75	12	55	16	12	0	71	1.14
189523--189596	19	3.9	19	73	18	50	17	12	1	68	1.26
189803--189843	20	2.0	20	100	0	82	41	4	24	29	1.75
195273--195333	22	2.8	22	82	9	88	34	18	22	24	1.96
197851--197893	18	2.4	19	80	7	54	51	0	6	41	1.29
199710--199772	18	3.5	18	71	16	67	28	4	1	65	1.22
199716--199771	16	3.2	16	71	24	51	28	5	1	64	1.26
199770--199828	10	5.8	10	76	11	57	27	0	0	72	0.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26