genome.fa.s8061.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008061.1 Hibiscus syriacus cultivar Beakdansim tig00110556_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5800122

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  23  of  26  ( 3118 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4732080--4732115	16	2.2	16	100	0	72	25	0	36	38	1.56
4740480--4740562	29	2.8	29	92	1	139	43	9	14	32	1.78
4743930--4743959	15	2.0	15	93	0	51	20	0	23	56	1.42
4745249--4745331	29	2.8	29	90	1	130	43	8	14	33	1.76
4745455--4745504	27	1.9	26	88	8	66	28	12	20	40	1.87
4746705--4746805	46	2.1	49	87	5	145	24	2	13	58	1.50
4749513--4749870	179	2.0	179	98	0	698	28	23	17	30	1.97
4755582--4755638	28	2.1	28	81	12	66	35	1	1	61	1.17
4757970--4758062	47	2.0	47	86	0	132	37	16	13	32	1.88
4766070--4766439	182	2.0	182	99	0	731	26	23	16	33	1.96
4771270--4771367	44	2.1	47	88	7	148	27	11	21	39	1.87
4783674--4783797	7	16.4	7	67	20	56	73	1	18	6	1.13
4783684--4783755	29	2.4	30	86	13	105	73	2	18	5	1.15
4783742--4783801	23	2.5	23	91	5	93	76	0	18	5	0.96
4784936--4785343	51	7.9	51	94	1	654	29	15	26	28	1.96
4784936--4785454	102	5.0	102	89	3	655	29	15	25	29	1.96
4785205--4785456	55	4.6	56	83	6	252	29	16	24	30	1.96
4784952--4785474	51	9.9	54	89	5	232	29	16	25	29	1.96
4791898--4791998	20	5.0	20	75	7	96	33	23	13	28	1.93
4791966--4792030	20	3.4	19	79	10	69	32	21	12	33	1.90
4791898--4792011	40	2.8	41	78	6	124	34	22	13	29	1.92
4792167--4792207	16	2.6	16	84	0	55	26	4	0	68	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4795487--4795548	29	2.1	29	90	0	97	30	30	16	22	1.96
4795617--4795767	64	2.4	64	90	1	232	52	17	1	27	1.56
4797108--4797215	21	5.1	21	78	8	103	24	18	35	22	1.96
4797093--4797215	42	2.9	42	85	0	147	22	19	35	21	1.96
4799543--4799596	22	2.5	22	85	5	76	24	14	42	18	1.88
4799711--4799748	20	2.0	20	84	5	51	44	13	15	26	1.83
4803990--4804041	23	2.3	23	83	6	61	57	17	0	25	1.40
4807719--4807753	17	2.1	17	100	0	70	42	28	5	22	1.76
4821254--4821308	25	2.1	26	83	12	69	27	3	1	67	1.17
4822646--4822678	15	2.2	15	89	10	50	57	6	0	36	1.23
4824148--4824186	18	2.0	20	85	9	55	64	0	2	33	1.08
4825591--4825672	41	2.0	41	97	0	155	28	12	25	34	1.92
4826155--4826180	13	2.0	13	100	0	52	46	30	7	15	1.74
4829855--4829898	17	2.6	17	85	0	61	13	13	11	61	1.57
4830615--4830722	54	2.0	54	92	0	180	37	27	12	23	1.90
4835842--4835870	2	14.5	2	100	0	58	48	0	0	51	1.00
4836606--4836648	22	1.9	23	86	13	63	48	2	6	41	1.43
4839454--4839481	2	14.0	2	100	0	56	50	0	0	50	1.00
4841821--4841851	2	15.5	2	100	0	62	51	0	0	48	1.00
4865949--4866052	41	2.5	40	83	9	131	46	14	17	22	1.84
4865949--4866052	20	5.1	20	83	5	129	46	14	17	22	1.84
4866402--4866510	20	5.4	20	85	5	148	21	19	16	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4866409--4866510	41	2.5	41	85	1	143	22	18	14	44	1.86
4866484--4866567	40	2.1	40	88	0	123	17	15	22	44	1.87
4866463--4866559	20	4.8	20	82	2	106	19	17	19	43	1.88
4866507--4866595	40	2.2	40	78	7	92	21	14	22	41	1.89
4866580--4866689	21	5.3	21	88	5	152	43	17	20	18	1.88
4868935--4869704	383	2.0	381	97	0	1459	34	9	9	46	1.69
4875348--4875382	17	2.1	16	89	5	52	42	2	0	54	1.15
4875654--4875692	20	2.1	18	85	9	51	43	5	5	46	1.48
4876365--4876420	20	2.8	20	91	0	85	28	19	8	42	1.81
4884277--4884319	23	2.0	21	81	9	50	34	2	2	60	1.22
4888923--4888949	2	13.5	2	100	0	54	51	0	48	0	1.00
4894489--4895903	706	2.0	706	98	0	2722	33	26	13	27	1.93
4908443--4908478	18	2.0	18	100	0	72	22	11	16	50	1.77
4908448--4908487	18	2.2	18	90	0	62	22	12	17	47	1.81
4914662--4914788	60	2.1	60	92	2	211	31	22	20	25	1.98
4922716--4922786	36	2.0	36	91	0	115	52	8	22	16	1.71
4924027--4924080	24	2.2	24	90	0	81	48	5	5	40	1.50
4924509--4924756	130	1.9	130	93	0	424	36	13	14	35	1.85
4925152--4925227	35	2.2	35	92	0	125	36	0	22	40	1.54
4925574--4925617	24	1.9	22	90	9	70	52	4	0	43	1.22
4925617--4925685	35	2.0	35	83	11	88	39	4	2	53	1.36
4925661--4925717	29	2.0	29	85	0	78	47	3	0	49	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4926017--4926102	35	2.5	35	84	0	100	40	20	1	37	1.61
4926071--4926113	21	2.0	21	100	0	86	46	13	0	39	1.44
4926236--4926269	16	2.0	18	88	11	54	26	2	5	64	1.30
4926739--4926986	130	1.9	130	93	0	424	36	13	14	35	1.85
4935130--4935171	2	21.0	2	100	0	84	50	0	0	50	1.00
4940664--4940732	27	2.7	27	80	13	74	28	5	8	56	1.53
4941132--4941170	20	1.9	21	94	5	71	43	25	7	23	1.80
4941265--4941320	28	2.0	28	85	0	76	37	1	14	46	1.55
4943333--4943380	16	3.1	16	81	3	53	16	8	25	50	1.73
4947387--4947446	19	3.0	21	79	11	74	36	1	0	61	1.06
4947385--4947491	21	5.1	21	67	23	66	32	1	0	64	1.11
4951238--4951299	28	2.2	28	85	5	81	30	1	1	66	1.11
4952659--4952816	21	7.8	20	70	7	77	37	25	17	18	1.93
4952784--4952977	20	9.6	20	82	8	89	35	27	18	18	1.94
4952784--4952977	40	4.8	39	84	5	219	35	27	18	18	1.94
4952784--4952976	60	3.2	60	83	5	255	35	27	18	18	1.95
4953366--4953422	14	3.7	14	70	20	51	8	24	21	45	1.80
4953356--4953426	33	2.2	33	97	0	133	9	23	18	47	1.78
4953354--4953404	14	3.0	18	70	24	56	9	23	21	45	1.82
4953506--4953582	21	3.7	21	77	6	93	48	15	22	14	1.81
4953567--4953623	14	3.7	14	75	20	60	45	22	22	8	1.80
4953559--4953639	33	2.5	33	93	0	135	49	22	19	8	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4953657--4953713	14	3.7	14	75	20	60	8	24	22	43	1.81
4953640--4953763	33	3.5	33	86	10	158	12	24	17	45	1.82
4953698--4953762	21	3.1	21	82	4	96	10	26	15	47	1.78
4955690--4955746	14	3.7	14	72	20	51	43	24	21	10	1.83
4955672--4955765	33	2.8	33	90	1	134	44	26	18	10	1.82
4955704--4955781	19	4.4	19	79	15	94	46	28	17	7	1.76
4955777--4955949	19	9.6	19	76	12	159	10	20	23	45	1.81
4955799--4955855	14	3.7	14	75	20	51	10	22	22	43	1.84
4955777--4955949	33	4.8	38	80	8	168	10	20	23	45	1.81
4957869--4957904	14	2.6	14	95	0	63	33	0	22	44	1.53
4958011--4958109	19	5.4	19	83	14	136	45	17	23	14	1.84
4958011--4958128	53	2.2	53	96	3	220	44	17	24	13	1.85
4958124--4958341	53	4.1	52	84	10	284	14	22	16	46	1.83
4958118--4958327	72	2.9	70	87	8	271	15	22	16	45	1.84
4958195--4958341	33	4.2	33	77	13	161	14	21	16	46	1.83
4960822--4960868	24	2.0	24	87	8	69	38	21	14	25	1.92
4961561--4961746	20	9.3	20	89	4	250	19	18	27	34	1.95
4962262--4962470	20	10.4	20	86	2	222	18	17	25	38	1.92
4961046--4962432	701	2.0	701	98	0	2693	30	17	20	32	1.95
4968450--4968486	18	2.1	18	94	0	65	10	64	8	16	1.47
4972699--4972738	21	1.9	21	89	0	62	42	2	15	40	1.60
4979227--4979340	33	3.5	32	81	10	124	42	35	9	12	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4979335--4979406	30	2.3	31	83	4	92	45	26	8	19	1.78
4988984--4989023	20	2.0	20	85	4	55	7	7	22	62	1.47
4989598--4989653	23	2.5	22	80	13	69	37	12	8	41	1.74
4990727--4990777	22	2.3	23	83	6	61	54	1	0	43	1.11
4991603--4991666	21	3.1	21	70	4	67	18	18	25	37	1.94
4991695--4991764	20	3.5	20	76	3	86	15	21	24	38	1.92
4991690--4991853	41	4.1	41	81	11	164	21	17	21	39	1.93
4991607--4991804	101	2.0	101	94	2	353	19	19	21	38	1.93
4991756--4991848	19	4.6	21	72	10	86	20	17	22	39	1.92
4992443--4992474	6	5.7	6	96	3	50	0	18	53	28	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26