genome.fa.s8061.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008061.1 Hibiscus syriacus cultivar Beakdansim tig00110556_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5800122

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  2  of  26  ( 3118 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
199742--199906	41	4.1	42	69	20	118	27	3	1	67	1.12
199806--199839	5	6.8	5	87	12	52	20	0	0	79	0.73
199744--199906	47	3.4	47	69	18	115	28	3	1	67	1.13
199769--199875	56	1.9	57	81	12	132	26	2	0	70	1.07
199741--199906	93	1.9	84	84	13	217	27	3	1	68	1.12
200059--200119	25	2.4	25	76	10	70	16	4	4	73	1.18
200050--200119	22	3.0	22	70	23	54	17	4	4	74	1.14
203183--203233	9	5.6	9	78	17	52	80	0	15	3	0.86
203191--203233	14	3.1	14	74	12	52	81	0	13	4	0.84
203191--203243	13	4.0	13	77	20	56	79	1	15	3	0.96
204901--204975	37	2.0	38	86	2	107	29	21	14	34	1.93
204982--205067	37	2.4	36	88	2	118	26	19	13	39	1.90
204906--205271	102	3.6	101	87	2	430	29	19	13	37	1.90
205084--205309	36	6.4	36	78	10	216	27	19	12	40	1.88
205104--205363	138	1.9	138	86	0	376	26	20	12	40	1.88
204901--205271	203	1.8	203	81	5	462	29	19	13	37	1.90
205258--205441	65	2.8	67	82	4	203	32	20	8	38	1.82
206121--206275	63	2.4	63	88	1	211	36	23	16	23	1.94
206195--206590	106	3.9	106	81	5	433	34	23	19	21	1.96
206827--207056	85	2.7	85	91	2	338	36	18	17	26	1.93
208856--209244	44	9.0	44	80	5	366	45	7	21	25	1.77
208862--209269	87	4.7	87	78	6	386	46	6	20	25	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
208856--209235	131	2.9	127	83	6	453	45	7	21	25	1.78
209150--209267	42	2.8	42	82	11	127	52	5	16	26	1.64
209396--209519	64	1.9	64	88	6	187	46	4	3	45	1.37
209843--209904	23	2.9	20	77	13	70	51	0	1	46	1.10
212074--212115	21	2.0	21	100	0	84	19	23	14	42	1.87
235261--235291	2	15.5	2	100	0	62	48	0	0	51	1.00
235313--235374	22	2.8	22	85	4	81	24	17	22	35	1.95
245514--245551	20	1.9	20	88	0	58	50	7	0	42	1.31
254613--254689	14	6.0	12	69	22	50	44	0	0	55	0.99
254659--254711	21	2.6	21	85	5	65	39	1	0	58	1.09
254649--254715	16	4.4	15	75	14	57	40	1	0	58	1.07
258122--258257	63	2.1	64	85	4	177	52	4	10	32	1.55
258925--259022	45	2.2	45	83	3	117	24	13	36	25	1.92
259440--259738	39	7.7	39	85	2	404	21	24	12	42	1.86
259440--259738	78	3.8	78	92	0	483	21	24	12	42	1.86
259743--260003	73	3.6	73	92	2	425	39	11	16	32	1.85
260686--260740	22	2.5	22	90	0	92	41	12	10	34	1.78
261109--261257	54	2.8	54	90	0	226	28	21	14	35	1.92
263437--263474	14	2.8	13	88	7	58	0	26	0	73	0.83
265881--265911	16	1.9	16	93	0	53	29	3	16	51	1.59
268371--268468	45	2.2	45	87	3	144	21	15	39	23	1.91
272842--273264	55	7.9	55	88	4	448	29	26	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
272838--273249	110	3.8	110	85	5	513	28	26	16	29	1.97
274536--274605	22	3.2	20	78	15	68	10	12	0	77	1.00
274550--274675	7	17.9	7	75	14	107	11	19	0	69	1.17
274536--274676	16	8.8	16	76	18	107	10	18	0	70	1.15
274549--274691	15	9.1	14	76	19	99	10	18	0	70	1.15
278124--278151	8	3.5	8	100	0	56	50	10	0	39	1.37
284299--284387	45	1.9	47	88	6	137	35	22	11	30	1.89
295104--295160	20	2.8	19	82	15	62	57	3	1	36	1.26
295257--295305	13	3.6	14	74	20	50	67	2	0	30	1.02
295557--295613	29	1.9	30	82	7	71	35	7	14	43	1.72
295962--296028	31	2.2	31	88	0	98	40	17	10	31	1.84
302070--302135	28	2.4	28	100	0	132	24	24	22	28	1.99
304894--304925	11	2.9	11	100	0	64	43	28	9	18	1.81
318508--318533	13	2.0	13	100	0	52	46	15	15	23	1.83
321506--321662	64	2.5	64	82	4	174	33	19	18	28	1.95
322315--322402	31	2.9	31	90	8	128	21	18	21	38	1.93
325343--325404	31	2.0	31	87	0	88	27	19	20	32	1.97
328378--328407	3	9.7	3	92	7	51	0	33	0	66	0.92
328511--328548	19	2.0	20	89	5	60	50	2	21	26	1.62
328917--329071	64	2.5	60	82	8	161	34	20	18	27	1.95
329715--329795	30	2.7	31	94	3	139	18	18	22	40	1.91
337341--337365	11	2.3	11	100	0	50	16	52	16	16	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
340592--340623	15	2.1	16	94	5	57	6	25	18	50	1.70
341374--341407	16	2.1	16	94	0	59	32	26	8	32	1.87
341763--341787	11	2.3	11	100	0	50	16	52	16	16	1.76
345779--345808	15	1.9	16	93	6	53	50	0	3	46	1.18
346218--346261	23	1.9	23	90	9	72	34	9	22	34	1.86
350365--350442	21	3.7	21	100	0	156	28	19	20	32	1.97
350509--350632	64	1.9	64	81	12	148	37	19	16	25	1.93
350994--351029	12	3.0	12	91	0	54	36	2	22	38	1.69
351028--351108	29	2.8	29	94	3	137	44	14	22	18	1.86
356036--356069	15	2.3	15	94	0	59	5	17	67	8	1.37
357113--357151	14	2.8	14	84	0	51	2	23	38	35	1.68
359246--359271	2	13.0	2	100	0	52	50	0	0	50	1.00
362541--362580	21	1.9	21	89	0	62	50	10	10	30	1.69
362908--362945	20	1.9	20	88	0	58	36	10	13	39	1.79
363737--363773	19	1.9	19	88	0	56	35	16	8	40	1.78
365020--365074	20	2.8	20	91	0	92	25	20	38	16	1.92
365678--365732	20	2.8	19	83	5	74	27	21	16	34	1.95
367085--367138	20	2.4	23	88	11	78	24	22	18	35	1.96
367126--367268	64	2.2	64	82	4	164	24	23	18	33	1.97
368879--368923	21	2.1	21	87	0	63	37	15	15	31	1.89
368630--369013	205	1.9	205	90	2	619	33	18	13	34	1.90
376804--376852	25	2.0	25	84	15	66	46	12	4	36	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379993--380034	21	2.0	21	100	0	84	14	42	19	23	1.87
380687--380727	8	5.2	8	88	5	66	36	0	26	36	1.57
380687--380727	15	2.6	16	84	7	66	36	0	26	36	1.57
380808--381681	128	6.8	128	92	2	1416	21	24	20	33	1.97
382034--382140	34	3.1	34	89	0	160	36	3	4	55	1.39
382668--382733	21	3.2	20	91	4	87	19	25	36	18	1.94
382737--382778	21	2.0	21	85	0	57	23	11	38	26	1.90
384522--384595	31	2.3	30	77	11	67	56	2	0	40	1.13
384560--384601	21	1.9	23	85	9	61	64	2	0	33	1.07
401580--401607	14	2.0	14	100	0	56	14	14	14	57	1.66
401567--401618	24	2.1	26	92	7	90	17	13	15	53	1.72
401880--401928	10	4.6	10	80	14	62	8	8	20	63	1.48
401888--401955	23	2.9	23	78	4	82	8	11	22	57	1.61
404099--404159	21	3.2	21	65	29	64	31	4	21	42	1.74
404098--404210	35	3.2	36	91	5	176	31	4	19	44	1.70
408684--408744	21	3.2	20	65	29	53	32	4	19	42	1.73
408676--408795	35	3.3	36	88	6	181	33	5	18	43	1.72
412087--412171	23	3.7	23	95	0	143	37	7	21	34	1.80
412630--412884	87	2.9	87	82	2	325	36	11	8	43	1.71
412815--412865	23	2.2	23	82	6	59	47	11	3	37	1.59
413332--413385	25	2.2	25	100	0	108	7	18	7	66	1.40
417384--417439	22	2.5	22	94	0	94	21	28	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417428--417541	20	5.7	20	88	2	115	35	17	19	27	1.94
417406--417554	40	3.7	40	78	7	149	32	20	18	28	1.96
417488--417574	20	4.3	20	94	0	138	26	24	20	28	1.99
418392--418445	24	2.2	24	93	0	90	20	18	20	40	1.91
418635--418671	14	2.6	14	91	4	56	51	21	21	5	1.68
420708--420742	18	1.9	18	100	0	70	54	22	5	17	1.64
420802--421071	140	1.9	140	96	0	504	29	12	15	42	1.84
421042--421260	20	11.9	20	71	18	152	36	22	17	23	1.95
421050--421309	54	4.8	55	84	4	325	35	23	18	22	1.95
422919--423011	42	2.2	42	80	3	107	22	16	39	21	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26