genome.fa.s8061.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008061.1 Hibiscus syriacus cultivar Beakdansim tig00110556_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5800122

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  15  of  26  ( 3118 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2914757--2914794	19	2.0	19	89	0	58	50	15	21	13	1.78
2914728--2914804	33	2.4	33	88	2	111	41	22	23	12	1.88
2914823--2914880	20	2.9	20	97	0	107	15	22	24	37	1.93
2915929--2915972	22	1.9	23	86	9	63	25	15	22	36	1.94
2916144--2916168	12	2.1	12	100	0	50	72	0	28	0	0.86
2918445--2918571	33	3.8	33	84	4	166	44	18	20	15	1.86
2918445--2918536	19	5.4	19	63	24	60	44	18	19	17	1.87
2918446--2918578	66	2.0	66	91	0	212	43	18	20	17	1.88
2918586--2918643	14	3.7	14	72	24	53	8	24	22	44	1.80
2918571--2918661	34	2.7	33	91	3	146	13	21	20	43	1.86
2918768--2918803	13	2.6	14	82	8	56	44	25	0	30	1.54
2920147--2920212	21	3.2	21	69	2	62	19	18	36	25	1.94
2920147--2920268	42	2.9	41	80	6	120	22	17	36	22	1.94
2922241--2922301	20	3.1	19	79	9	68	44	18	24	13	1.85
2922290--2922326	14	2.6	14	100	0	74	40	24	27	8	1.83
2922304--2922376	33	2.2	33	87	0	110	41	24	23	10	1.86
2922266--2922359	47	2.0	48	93	2	163	38	24	26	10	1.88
2922377--2922428	20	2.7	20	77	14	63	15	19	19	46	1.85
2922931--2923044	20	5.7	20	81	6	113	24	19	24	31	1.98
2922931--2923046	61	1.9	61	85	0	160	24	18	24	32	1.97
2923094--2923134	21	2.0	21	85	0	55	34	31	17	17	1.93
2923372--2923402	3	10.3	3	100	0	62	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2929031--2929106	23	3.3	23	94	0	134	9	22	38	30	1.85
2930762--2930795	9	3.9	9	84	7	52	61	2	0	35	1.11
2930758--2930802	17	2.8	16	90	6	72	64	2	0	33	1.06
2931082--2931123	19	2.2	19	91	0	66	14	40	28	16	1.88
2931215--2931249	14	2.5	14	100	0	70	65	0	5	28	1.15
2936093--2936197	33	3.1	34	86	4	142	37	3	3	55	1.36
2936717--2936786	21	3.3	21	84	7	88	22	20	37	20	1.95
2936719--2936813	21	4.5	21	81	5	57	23	16	38	21	1.92
2938445--2938506	27	2.2	28	82	8	72	56	1	0	41	1.09
2942275--2942316	20	2.0	20	86	9	57	26	14	21	38	1.91
2944831--2944904	3	24.7	3	88	0	112	33	4	0	62	1.14
2944830--2944924	9	10.1	9	80	8	66	37	3	0	58	1.14
2947092--2947139	18	2.7	18	78	9	55	25	0	2	72	0.95
2957738--2957790	11	4.5	11	75	13	52	81	0	15	3	0.83
2957743--2957790	9	5.3	9	76	0	51	81	0	14	4	0.84
2958112--2958156	18	2.6	17	89	6	65	31	6	8	53	1.58
2958906--2959123	82	2.7	82	97	0	409	29	13	21	35	1.92
2959681--2960228	113	4.8	113	89	0	821	38	13	19	28	1.90
2960480--2960547	3	22.7	3	87	0	100	33	4	0	61	1.16
2965766--2965822	19	3.0	19	87	5	71	33	12	10	43	1.76
2968136--2968189	21	2.6	21	93	0	81	29	24	20	25	1.99
2968287--2968362	21	3.6	21	72	13	75	23	21	21	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2968152--2968333	92	2.0	90	84	4	240	30	23	16	30	1.96
2968291--2968386	42	2.3	42	90	0	147	25	18	19	36	1.95
2968317--2968379	21	3.0	21	67	17	58	23	19	19	38	1.93
2968468--2968510	21	2.0	21	100	0	86	39	32	13	13	1.85
2969017--2969053	6	6.5	6	87	9	51	2	13	51	32	1.55
2969087--2969200	21	5.4	21	72	15	101	37	21	19	21	1.94
2969084--2969221	42	3.3	42	89	0	222	35	23	19	21	1.96
2970895--2970937	2	22.0	2	85	4	61	51	0	0	48	1.00
2971002--2971050	23	2.1	23	81	7	55	59	10	4	26	1.48
2972295--2972332	3	12.7	3	83	10	51	65	0	2	31	1.06
2972295--2972341	24	2.0	24	91	4	78	65	2	2	29	1.15
2972676--2973337	113	5.9	113	90	2	963	27	20	15	36	1.93
2980437--2980465	12	2.3	13	94	5	51	51	6	13	27	1.66
2985910--2985947	16	2.2	17	86	9	51	50	0	0	50	1.00
2986312--2986340	2	14.5	2	100	0	58	51	0	0	48	1.00
2986411--2986459	23	2.1	23	81	7	55	59	10	4	26	1.48
2988630--2988682	3	17.7	3	84	7	72	64	0	0	35	0.94
2988630--2988691	21	2.9	21	87	4	79	64	1	0	33	1.03
2988630--2988689	18	3.2	18	80	13	66	63	1	0	35	1.05
3000892--3000916	12	2.1	12	100	0	50	24	24	16	36	1.94
3022122--3022173	24	2.2	24	89	0	77	48	7	9	34	1.65
3022412--3022666	135	1.9	137	91	3	424	46	12	2	38	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3023046--3023115	10	7.0	10	76	0	68	47	0	12	40	1.42
3023046--3023115	20	3.5	20	92	0	113	47	0	12	40	1.42
3023214--3023253	10	4.0	10	90	0	62	52	0	12	35	1.39
3023220--3023279	27	2.3	25	82	8	66	55	3	11	30	1.52
3028746--3028771	2	13.0	2	100	0	52	50	0	0	50	1.00
3030418--3030455	18	2.1	18	85	9	51	26	10	7	55	1.61
3033976--3034102	65	2.0	65	82	6	159	47	3	3	45	1.37
3034012--3034118	37	2.9	36	74	17	96	49	3	2	43	1.35
3034229--3034288	22	2.7	22	82	14	70	5	8	10	76	1.14
3034889--3034949	31	2.0	31	93	0	104	39	6	9	44	1.64
3035428--3035473	19	2.6	17	81	15	58	56	0	2	41	1.11
3035413--3035472	19	3.3	19	77	11	54	61	0	1	36	1.06
3035442--3035497	21	2.8	21	81	5	62	57	1	1	39	1.20
3035488--3035575	14	6.7	14	69	20	66	54	1	0	44	1.07
3035488--3035572	40	2.2	38	87	8	118	54	1	0	44	1.07
3035467--3035623	64	2.5	64	91	6	250	56	2	0	41	1.13
3035523--3035597	24	3.0	26	83	14	95	54	1	0	44	1.08
3047819--3047876	2	29.0	2	96	0	107	48	0	1	50	1.11
3049754--3049793	16	2.5	16	91	0	62	12	12	22	52	1.72
3060207--3060246	21	2.0	21	85	5	55	47	10	10	32	1.70
3061060--3061095	2	18.0	2	100	0	72	50	0	0	50	1.00
3061152--3061530	106	3.7	100	84	8	448	23	20	20	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3061158--3061530	201	1.9	199	91	1	611	22	20	21	35	1.96
3062101--3062185	37	2.3	37	81	4	91	42	15	17	24	1.88
3064002--3064046	17	2.6	17	76	13	56	0	11	11	77	0.99
3063995--3064036	19	2.2	19	91	8	68	0	11	7	80	0.88
3067354--3067416	24	2.6	23	80	7	63	77	0	7	14	0.97
3068416--3068509	38	2.5	35	74	12	89	60	6	5	27	1.43
3068715--3068763	10	4.9	10	94	0	62	57	0	0	42	0.99
3068711--3068779	8	8.2	8	78	16	52	56	0	2	40	1.14
3068723--3068763	2	20.5	2	94	0	73	53	0	0	46	1.00
3068795--3068970	88	2.1	83	80	12	198	57	2	5	34	1.34
3069013--3069055	18	2.5	17	85	7	61	67	2	4	25	1.22
3073386--3073492	46	2.4	45	87	7	148	21	17	14	46	1.83
3073413--3073506	46	2.0	47	91	2	154	25	15	12	45	1.82
3073418--3073520	46	2.2	46	85	1	125	27	16	11	44	1.82
3074658--3074712	15	3.6	15	81	13	76	38	3	3	54	1.36
3074833--3074895	30	2.0	32	84	6	85	49	0	0	50	1.00
3074847--3074888	22	1.9	22	85	9	59	47	0	0	52	1.00
3077078--3077112	13	2.7	13	86	0	52	45	11	5	37	1.64
3079121--3079167	23	2.0	23	100	0	94	36	17	25	21	1.94
3082981--3083129	60	2.5	61	78	6	153	26	22	28	22	1.99
3087018--3087053	2	18.0	2	94	0	63	52	0	0	47	1.00
3089156--3089275	48	2.5	48	84	2	161	15	15	31	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3093722--3093763	18	2.3	18	80	8	50	42	9	0	47	1.36
3093785--3093841	27	2.2	25	79	17	62	52	1	1	43	1.21
3094273--3094304	16	2.1	16	94	5	57	40	3	0	56	1.15
3099381--3099438	31	1.9	31	85	3	82	24	15	6	53	1.66
3100901--3100952	21	2.5	21	81	3	61	38	19	25	17	1.93
3100941--3101075	20	6.7	20	78	7	112	34	24	17	24	1.96
3100938--3101069	61	2.2	61	85	0	174	36	24	15	23	1.94
3101235--3101278	22	2.0	22	95	0	79	20	45	15	18	1.85
3101542--3101579	20	1.9	20	88	0	58	13	15	21	50	1.78
3101716--3101770	25	2.2	24	78	15	58	20	9	18	52	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26