genome.fa.s8061.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008061.1 Hibiscus syriacus cultivar Beakdansim tig00110556_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5800122

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  5  of  26  ( 3118 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
847725--847777	3	18.0	3	88	3	72	62	0	0	37	0.96
847726--847785	26	2.3	26	80	8	68	65	0	1	33	1.03
850389--850453	30	2.2	30	81	10	80	32	20	3	44	1.67
850393--850460	30	2.4	29	80	9	79	32	19	2	45	1.65
850960--851008	15	3.1	16	79	8	64	61	0	2	36	1.08
851806--851893	41	2.1	41	87	0	131	47	10	9	32	1.69
854474--854536	21	3.1	20	82	13	76	57	0	0	42	0.99
854760--855541	112	7.0	112	92	2	1232	27	18	15	37	1.92
855836--855992	52	3.0	52	97	1	289	32	17	13	36	1.89
856484--856960	83	5.7	83	97	0	891	37	22	12	27	1.90
858093--858131	11	3.6	11	90	10	55	0	17	0	82	0.68
858093--858131	17	2.3	18	87	12	57	0	17	0	82	0.68
871024--871068	22	2.0	22	91	0	72	28	22	11	37	1.88
882733--882773	8	5.2	8	82	5	57	34	0	29	36	1.58
882846--883141	128	2.3	128	95	0	538	22	26	19	31	1.98
883028--883253	112	2.0	112	93	1	382	21	27	20	30	1.98
882900--883381	240	2.0	240	91	1	779	22	25	19	31	1.98
883140--883456	128	2.5	128	99	0	625	22	24	20	32	1.98
883857--883956	33	3.0	34	83	2	139	39	3	4	54	1.35
884479--884548	21	3.3	20	90	5	95	18	27	35	18	1.94
884552--884599	21	2.3	21	85	0	60	22	12	39	25	1.89
886342--886387	18	2.6	19	83	10	53	54	2	0	43	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
886329--886387	17	3.4	18	77	11	52	54	1	0	44	1.10
887659--887700	2	21.5	2	95	4	77	50	0	0	50	1.00
889209--889264	3	19.0	3	92	3	96	66	1	0	32	1.03
908188--908217	2	15.0	2	100	0	60	50	0	0	50	1.00
908308--908343	17	2.1	18	89	5	56	55	0	2	41	1.14
919064--919118	23	2.5	22	88	8	78	21	18	30	29	1.97
919370--919413	23	1.9	23	81	9	54	40	2	18	38	1.63
925527--925584	25	2.2	25	84	9	71	50	0	24	25	1.50
928567--928720	29	5.3	28	79	11	150	36	21	6	35	1.79
928567--928721	58	2.7	58	79	12	183	36	21	6	35	1.80
928726--928762	12	3.0	12	92	7	65	10	24	48	16	1.77
928726--928762	13	2.9	13	96	4	67	10	24	48	16	1.77
928768--928821	19	2.8	19	91	0	81	18	31	33	16	1.93
936523--936680	54	2.9	52	76	11	151	34	22	7	36	1.82
936524--936680	29	5.7	28	72	9	110	34	22	7	36	1.81
936682--936712	16	1.9	16	93	0	53	9	22	48	19	1.78
947806--947836	2	15.5	2	100	0	62	51	0	0	48	1.00
948288--948346	3	19.3	3	83	13	52	69	0	0	30	0.89
948288--948347	8	8.1	7	81	18	61	70	0	0	30	0.88
948296--948347	12	4.2	12	85	14	70	69	0	0	30	0.89
948691--949462	84	9.3	84	78	5	732	24	19	25	30	1.98
948689--949456	165	4.6	167	78	6	683	24	19	25	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
948691--949457	249	3.1	248	88	2	1103	24	19	25	30	1.98
953726--953763	14	2.6	15	83	8	60	65	0	0	34	0.93
954135--954219	33	2.6	34	92	5	131	29	14	17	38	1.89
954149--954219	33	2.2	33	100	0	142	28	11	19	40	1.86
954268--954339	3	23.7	3	86	13	87	68	0	0	31	0.90
954597--954649	21	2.5	21	81	6	72	20	26	18	33	1.96
954639--954685	20	2.3	20	85	3	58	40	17	21	21	1.91
954676--954807	41	3.2	41	79	2	131	37	25	15	21	1.93
954677--954755	20	3.9	21	79	11	83	35	27	17	18	1.94
954676--954738	21	3.0	22	79	13	78	39	26	19	14	1.90
954721--954787	20	3.3	20	87	0	98	28	29	13	28	1.94
955286--955344	20	3.0	20	87	0	73	15	18	22	44	1.87
955481--955535	25	2.2	24	78	15	58	20	9	18	52	1.71
956664--956711	18	2.7	18	93	0	87	27	45	12	14	1.81
957250--957316	20	3.4	20	81	2	73	38	23	22	14	1.92
957397--957483	20	4.4	20	88	1	122	14	24	24	36	1.93
957410--957509	20	5.1	19	85	6	83	21	20	25	34	1.97
957410--957503	40	2.4	40	83	5	111	18	21	25	35	1.95
957857--957924	21	3.3	20	74	8	66	25	41	14	19	1.89
957847--957936	40	2.2	42	84	4	121	22	41	14	22	1.89
957850--957967	42	2.8	40	80	5	101	23	39	15	21	1.91
959347--959385	14	2.8	14	84	0	51	35	0	17	46	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
959504--959557	14	3.5	14	77	22	63	48	20	20	11	1.80
959589--959676	20	4.4	20	75	5	88	18	20	21	39	1.92
959891--959940	20	2.5	20	80	0	73	22	18	22	38	1.94
960153--960186	12	2.9	12	86	4	52	17	41	5	35	1.74
961669--961799	19	7.7	19	67	23	103	42	19	23	13	1.87
961669--961795	33	3.8	33	90	4	211	42	19	23	14	1.88
961670--961802	66	2.0	66	98	0	257	41	19	23	15	1.90
961805--961884	33	2.4	33	91	0	124	10	21	21	47	1.79
961826--961884	19	3.4	18	71	22	54	11	22	18	47	1.81
961991--962027	14	2.6	14	91	0	65	45	24	0	29	1.53
963376--963442	21	3.2	21	68	4	55	19	20	35	23	1.95
963716--963896	91	2.0	90	89	6	274	47	19	12	20	1.81
965585--965697	19	6.1	19	76	13	110	44	18	23	13	1.85
965610--965673	33	1.9	34	90	3	103	42	20	25	12	1.87
966264--966314	20	2.5	20	87	6	68	23	19	23	33	1.97
966370--966421	20	2.5	21	87	3	70	21	23	17	38	1.93
966328--966436	41	2.7	41	74	5	96	29	18	21	31	1.97
966411--966463	21	2.5	22	81	6	74	33	18	26	20	1.96
966282--966483	103	1.9	104	84	7	266	29	19	22	29	1.98
968083--968149	25	2.7	25	77	9	64	41	0	2	55	1.15
968604--968787	9	19.4	9	67	17	72	75	4	5	14	1.14
968615--968687	37	2.0	35	82	10	85	80	5	1	12	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
968620--968683	22	2.7	22	77	18	58	79	4	1	14	0.96
968652--968783	50	2.7	49	73	15	103	75	4	6	14	1.16
968742--968788	19	2.4	21	82	13	64	78	0	8	12	0.95
968722--968787	30	2.2	30	81	10	73	78	3	6	12	1.04
968869--968910	14	3.1	14	82	3	50	71	0	2	26	0.98
968886--968917	16	1.9	17	93	6	57	68	0	0	31	0.90
970776--971072	84	3.5	84	79	6	249	24	18	22	34	1.96
970732--971083	169	2.1	167	80	5	386	25	17	22	34	1.96
970827--971102	84	3.3	84	84	2	347	25	18	23	33	1.96
971172--971232	30	1.9	31	87	9	88	32	8	18	40	1.80
971185--971246	30	2.1	30	87	6	90	33	8	12	45	1.72
971315--971767	36	12.8	36	77	15	401	41	12	18	27	1.87
971407--971468	21	3.2	21	63	25	55	40	9	20	29	1.84
971386--971574	101	1.9	102	90	1	308	40	11	20	28	1.86
971508--971572	21	3.4	21	68	24	61	43	12	21	23	1.86
971515--971635	42	3.0	42	88	7	173	45	14	19	21	1.85
971515--971672	78	2.0	79	89	6	241	44	15	18	21	1.87
971315--971767	216	2.1	210	86	4	615	41	12	18	27	1.87
971743--971784	15	2.7	16	82	14	52	40	14	21	23	1.90
977390--977466	29	2.6	29	81	18	81	74	7	3	14	1.19
977473--977541	21	3.1	21	73	19	52	75	4	7	13	1.16
977656--977708	15	3.4	15	82	10	52	71	0	1	26	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
977670--977707	17	2.2	18	95	4	69	71	0	0	28	0.87
978927--978966	20	2.0	21	90	5	64	45	2	5	47	1.38
979002--979034	17	1.9	17	93	0	57	33	0	0	66	0.92
979932--979993	23	2.7	23	94	0	106	38	11	12	37	1.80
979932--980026	23	4.1	23	81	5	84	36	12	13	36	1.83
980062--980298	75	3.2	74	85	4	314	32	13	12	41	1.82
988959--989026	30	2.3	30	100	0	136	39	23	4	32	1.75
991593--991632	13	2.9	13	92	7	62	40	7	30	22	1.81
995125--995197	18	3.9	18	82	7	101	28	31	20	19	1.97
995771--995912	64	2.2	64	83	7	173	27	18	19	34	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26