genome.fa.s8061.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008061.1 Hibiscus syriacus cultivar Beakdansim tig00110556_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5800122

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  10  of  26  ( 3118 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1714264--1714362	39	2.5	38	82	6	108	11	21	20	47	1.80
1714763--1714851	42	2.1	42	82	0	115	21	37	16	24	1.94
1716231--1716266	14	2.6	14	95	0	63	33	0	22	44	1.53
1716389--1716428	14	2.9	14	84	0	53	47	25	17	10	1.78
1716417--1716481	19	3.4	19	84	0	94	46	23	13	16	1.83
1716477--1716613	19	7.7	19	71	16	114	11	23	20	44	1.84
1716481--1716575	33	2.9	33	95	0	163	10	24	20	45	1.82
1716548--1716659	19	5.7	19	75	11	82	19	18	23	38	1.93
1720729--1720955	76	3.1	72	83	8	276	29	1	12	56	1.45
1721610--1721679	19	3.7	20	79	11	76	22	4	0	72	1.01
1728735--1728768	16	2.1	16	88	0	50	52	0	0	47	1.00
1733232--1733280	5	9.8	5	100	0	98	40	59	0	0	0.98
1739223--1739579	188	1.9	182	81	6	430	35	17	10	37	1.84
1746331--1746693	185	2.0	183	91	3	595	45	8	3	42	1.52
1754560--1754761	53	3.8	53	84	2	253	22	26	22	28	1.99
1754560--1754761	106	1.9	107	85	3	282	22	26	22	28	1.99
1755228--1755314	42	2.1	42	93	0	147	34	21	17	26	1.95
1755317--1755567	80	3.1	80	91	0	421	29	19	17	33	1.95
1755526--1755623	42	2.3	42	85	0	133	33	22	18	25	1.96
1771538--1771603	31	2.1	32	86	8	91	34	0	7	57	1.27
1774451--1774490	21	1.9	21	89	0	62	15	27	25	32	1.95
1780910--1781219	151	2.1	150	98	1	602	31	17	15	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1781080--1781354	94	2.9	95	80	4	324	30	16	16	36	1.91
1782600--1782739	63	2.2	63	87	2	192	32	20	21	26	1.97
1784057--1784092	18	2.0	18	94	0	63	11	19	33	36	1.87
1784028--1784215	62	3.1	62	61	23	135	25	14	24	36	1.93
1783954--1784308	121	2.9	121	97	0	647	24	14	24	36	1.93
1783969--1784278	59	5.2	59	62	25	159	25	14	23	35	1.93
1784324--1784384	23	2.7	23	86	0	86	19	26	26	27	1.99
1788202--1788360	63	2.5	63	85	6	189	33	18	20	27	1.96
1789678--1789713	18	2.0	18	100	0	72	11	22	33	33	1.89
1789649--1789836	62	3.1	62	62	26	146	24	14	25	35	1.94
1789575--1789938	121	3.0	121	97	0	674	25	14	24	35	1.93
1789799--1789834	18	2.0	18	94	0	63	11	19	33	36	1.87
1789949--1790005	23	2.5	23	88	0	78	22	24	26	26	2.00
1801513--1801543	16	1.9	16	93	0	53	67	3	0	29	1.06
1807445--1807531	21	4.2	21	70	2	77	31	22	18	27	1.97
1807414--1807510	41	2.4	41	96	0	176	34	23	19	22	1.97
1813074--1813131	26	2.2	26	78	0	71	32	3	0	63	1.11
1813105--1813150	24	2.0	23	91	4	74	28	2	0	69	1.00
1813980--1814039	14	4.5	13	76	17	61	25	1	6	66	1.25
1815051--1815114	20	3.5	20	68	27	68	14	34	29	21	1.93
1815044--1815113	35	2.0	35	100	0	140	17	31	31	20	1.95
1817802--1817872	2	35.5	2	97	0	133	50	1	0	47	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1821174--1821243	34	2.0	36	91	5	117	18	31	30	20	1.96
1821856--1821941	15	5.3	15	82	10	82	18	23	32	25	1.97
1821874--1821949	18	4.4	18	77	9	86	17	25	32	25	1.96
1824920--1824948	6	4.8	6	100	0	58	34	34	31	0	1.58
1833719--1833857	68	2.0	68	95	0	251	20	18	12	48	1.81
1835147--1835207	26	2.2	28	77	13	65	63	22	4	8	1.41
1845999--1846078	39	2.1	39	100	0	160	32	7	45	15	1.74
1846788--1846835	14	3.3	14	80	8	51	58	0	2	39	1.10
1847763--1847836	27	2.7	27	85	6	87	55	13	9	21	1.66
1847784--1847842	27	2.2	27	84	6	75	59	10	6	23	1.54
1851791--1851817	13	2.1	13	100	0	54	55	14	0	29	1.40
1861401--1861462	24	2.6	24	92	0	97	9	14	24	51	1.72
1861400--1861455	14	4.3	14	80	17	66	8	16	25	50	1.74
1861401--1861475	24	3.1	24	88	3	89	12	13	21	53	1.71
1862618--1862662	14	3.1	14	84	12	63	8	6	20	64	1.44
1867659--1867689	5	6.2	5	100	0	62	0	19	58	22	1.40
1867868--1867924	2	28.5	2	100	0	114	50	0	0	49	1.00
1869270--1869305	18	2.0	18	100	0	72	22	5	16	55	1.62
1875540--1875569	15	1.9	16	93	6	53	23	0	3	73	0.98
1875522--1875576	28	2.0	28	85	7	76	23	1	3	70	1.12
1876741--1876794	26	2.1	27	82	6	67	50	0	3	46	1.19
1877821--1877896	10	7.8	9	75	16	62	18	23	26	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1877821--1877896	9	7.7	10	73	12	59	18	23	26	31	1.97
1877821--1877896	30	2.5	30	82	4	109	18	23	26	31	1.97
1877821--1877904	20	4.3	19	75	13	80	19	25	26	29	1.98
1877903--1877945	22	2.0	22	95	0	77	18	44	23	13	1.86
1885053--1885148	10	9.8	9	73	16	66	17	27	25	30	1.97
1885053--1885141	9	8.9	10	72	20	62	17	26	23	31	1.97
1885091--1885141	21	2.5	21	90	9	79	15	27	25	31	1.96
1885053--1885148	50	1.9	49	89	6	149	17	27	25	30	1.97
1885150--1885188	17	2.3	17	95	0	69	17	43	23	15	1.87
1887554--1887656	14	8.0	12	67	24	50	30	3	0	65	1.17
1887554--1887596	18	2.5	17	85	7	61	25	4	0	69	1.07
1887884--1887913	14	2.1	15	93	6	53	33	3	0	63	1.11
1888099--1888133	2	18.0	2	94	5	63	48	0	0	51	1.00
1888178--1888255	18	4.4	18	74	7	70	15	11	2	70	1.27
1888178--1888257	27	3.0	27	70	15	67	15	12	2	70	1.28
1891598--1891658	25	2.4	25	97	2	113	34	14	9	40	1.79
1892140--1892675	183	2.9	183	95	0	950	27	20	20	30	1.98
1893846--1893962	36	3.1	36	71	4	99	28	17	14	39	1.89
1893805--1893979	72	2.4	76	83	8	202	26	17	13	42	1.86
1894073--1894147	39	1.9	39	83	5	98	28	21	13	37	1.91
1894050--1894250	106	1.9	104	85	7	273	32	18	10	38	1.85
1894035--1894265	106	2.2	104	79	6	261	32	19	10	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1894254--1894329	36	2.1	36	90	0	116	22	21	15	40	1.90
1894529--1894801	105	2.6	105	92	0	447	33	25	18	22	1.96
1894714--1894854	43	3.5	42	68	16	125	34	24	21	19	1.97
1894716--1894880	79	2.1	79	95	0	294	33	26	20	19	1.97
1894611--1894975	184	2.0	184	95	0	649	33	27	19	20	1.96
1894795--1895132	99	3.3	102	87	5	448	34	26	18	21	1.96
1895675--1895771	37	2.6	37	85	0	131	42	15	12	29	1.84
1896680--1896719	2	20.0	2	89	0	62	45	0	0	55	0.99
1897587--1897642	2	28.0	2	96	0	103	48	0	51	0	1.00
1906477--1906504	3	9.3	3	100	0	56	32	0	32	35	1.58
1908202--1908226	2	12.5	2	100	0	50	48	0	0	52	1.00
1908754--1908813	31	1.9	31	89	0	93	46	8	5	40	1.56
1915428--1915461	2	17.0	2	100	0	68	50	0	0	50	1.00
1916889--1916941	3	18.0	3	88	3	63	60	0	1	37	1.08
1917482--1917527	2	24.5	2	87	12	71	50	0	0	50	1.00
1917499--1917549	19	2.6	19	81	12	50	49	0	0	50	1.00
1919548--1919591	21	2.0	22	86	4	63	27	31	25	15	1.96
1921277--1921441	76	2.2	75	86	3	233	30	2	10	55	1.47
1921399--1921461	19	3.2	19	75	4	54	31	0	12	55	1.37
1923898--1923940	15	2.9	15	96	0	77	44	25	23	6	1.78
1927836--1927883	20	2.3	20	85	3	69	10	4	4	81	0.97
1927828--1927882	9	5.3	11	79	16	55	10	5	5	78	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1928038--1928062	12	2.1	12	100	0	50	60	8	24	8	1.52
1929787--1929849	19	3.2	19	75	4	54	31	0	11	57	1.34
1930477--1930526	23	2.2	23	85	7	66	20	6	0	74	1.03
1930568--1930609	21	2.0	21	85	0	57	35	0	0	64	0.94
1933404--1933439	18	2.0	18	88	0	54	19	22	33	25	1.97
1933419--1933471	23	2.2	24	93	6	90	26	16	24	32	1.97
1936284--1936335	19	2.7	19	100	0	104	34	26	17	21	1.95
1936368--1936438	19	3.7	19	92	0	124	28	33	19	18	1.95
1936283--1936483	103	2.0	102	83	8	257	30	25	17	25	1.97
1941769--1941799	14	2.3	14	94	5	55	35	25	3	35	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26