genome.fa.s8217.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008217.1 Hibiscus syriacus cultivar Beakdansim tig00110847_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2417150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  11  of  14  ( 1575 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1819086--1819209	63	2.0	63	91	0	203	50	25	0	24	1.50
1819143--1819320	84	2.1	84	87	2	259	48	26	0	25	1.52
1819162--1819356	42	4.5	42	73	15	153	47	27	0	25	1.52
1819261--1819368	28	4.1	27	68	22	77	47	25	0	26	1.53
1819254--1819357	49	2.1	49	89	3	156	46	28	0	25	1.53
1819745--1819785	14	3.1	14	76	20	52	41	0	4	53	1.22
1823887--1823912	13	2.0	13	100	0	52	0	7	15	76	0.99
1824548--1824582	2	17.5	2	100	0	70	51	0	0	48	1.00
1824870--1824929	2	30.0	2	93	0	102	46	0	0	53	1.00
1828392--1828433	22	1.9	22	95	0	75	28	19	11	40	1.87
1832942--1832988	24	2.0	24	91	0	76	44	8	6	40	1.60
1833077--1833135	2	30.0	2	93	3	102	49	1	0	49	1.11
1835609--1836116	252	2.0	253	99	0	1009	38	11	10	40	1.75
1839717--1839787	35	2.0	35	100	0	142	19	11	22	46	1.81
1840804--1840926	62	2.0	62	96	0	228	36	17	14	30	1.90
1841308--1841629	161	2.0	161	100	0	644	21	27	23	27	1.99
1844622--1844662	2	21.0	2	95	5	75	51	0	0	48	1.00
1847446--1847490	2	23.0	2	90	4	74	46	0	0	53	1.00
1847525--1847685	3	55.7	3	72	23	64	23	5	1	68	1.20
1849176--1849253	20	3.8	20	79	3	93	42	17	19	20	1.90
1849781--1849873	20	4.6	21	81	10	106	50	18	18	12	1.78
1849781--1849875	40	2.4	40	82	7	122	50	17	18	12	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1849920--1849975	14	3.6	14	74	21	58	8	25	23	42	1.82
1849903--1849996	33	2.8	33	95	1	161	10	22	22	44	1.83
1849898--1850024	20	7.1	19	71	20	103	11	22	19	46	1.81
1851695--1852074	94	4.1	94	94	2	624	21	12	18	47	1.81
1852218--1852282	19	3.7	19	67	26	61	10	21	20	47	1.80
1852221--1852295	33	2.3	33	92	0	123	10	22	20	46	1.81
1853204--1853239	14	2.6	14	95	0	63	33	0	22	44	1.53
1853346--1853425	33	2.4	33	91	0	124	47	22	20	10	1.79
1853346--1853406	19	3.5	19	74	21	69	45	21	21	11	1.82
1853435--1853556	33	3.9	32	85	10	171	12	23	19	44	1.85
1853498--1853556	19	3.4	18	73	22	63	11	22	20	45	1.83
1853437--1853556	61	2.0	61	93	0	204	12	23	19	45	1.84
1853550--1853622	20	3.6	20	67	17	60	24	19	23	32	1.97
1856090--1856116	13	2.1	13	100	0	54	40	22	14	22	1.90
1860601--1860648	24	2.0	24	83	0	60	39	22	6	31	1.79
1865492--1865547	23	2.4	23	87	3	76	42	3	1	51	1.29
1868795--1868999	2	102.0	2	78	15	210	44	4	1	48	1.33
1869038--1869073	2	18.0	2	88	0	54	50	5	0	44	1.25
1869191--1869266	8	9.2	8	77	13	57	44	3	0	51	1.20
1869207--1869266	2	32.0	2	81	18	76	48	1	0	50	1.11
1869520--1869707	14	12.8	15	70	20	57	40	9	2	46	1.50
1869520--1869593	24	3.4	21	80	14	87	40	8	1	50	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1869521--1869586	22	2.8	24	80	15	52	39	7	1	51	1.40
1869668--1869709	2	21.0	2	100	0	84	50	0	0	50	1.00
1869785--1869882	48	2.0	48	98	0	187	42	8	13	35	1.74
1870500--1870965	46	10.2	46	94	0	799	22	23	10	43	1.84
1871425--1871481	22	2.8	20	82	10	69	24	31	15	28	1.96
1871370--1871555	95	2.0	95	90	4	295	23	26	17	33	1.96
1877559--1877807	26	10.5	26	70	20	197	26	20	8	44	1.80
1877585--1877827	46	5.3	46	88	5	339	25	20	9	44	1.82
1877616--1877735	20	5.4	20	69	23	62	25	21	9	44	1.81
1877754--1877884	20	5.9	20	68	19	73	24	20	10	44	1.83
1877556--1877873	92	3.4	92	78	13	280	25	20	10	44	1.82
1877537--1877873	138	2.4	138	75	14	370	25	21	10	43	1.84
1877539--1877893	66	5.2	66	73	17	226	25	21	9	43	1.83
1878993--1879031	20	2.0	20	100	0	78	25	25	28	20	1.99
1882421--1882512	20	4.6	20	100	0	184	34	20	19	25	1.96
1883232--1883284	20	2.7	20	93	0	88	24	24	28	22	2.00
1884150--1884337	94	2.0	95	88	3	281	23	26	17	33	1.96
1885368--1885400	2	17.5	2	87	12	52	48	0	0	51	1.00
1888694--1888731	20	1.9	20	94	0	67	52	10	15	21	1.72
1888866--1888912	20	2.4	19	82	10	67	53	10	17	19	1.72
1888483--1888945	175	2.6	178	85	4	607	42	13	17	26	1.86
1888875--1888917	20	2.3	19	88	11	63	51	11	16	20	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1891121--1891164	21	2.1	21	91	0	70	40	11	31	15	1.83
1891198--1891260	33	1.9	33	90	0	99	28	0	49	22	1.50
1893023--1893071	19	2.6	19	93	0	80	30	2	10	57	1.43
1893188--1894352	199	5.9	199	93	2	1891	37	14	17	30	1.90
1895814--1895928	18	6.6	18	82	6	101	35	6	33	23	1.82
1895814--1895928	12	9.8	12	80	5	92	35	6	33	23	1.82
1895831--1895929	3	33.0	3	79	0	108	34	6	34	25	1.81
1897117--1897150	16	2.1	16	94	0	59	47	5	20	26	1.73
1897506--1897578	23	3.2	23	88	0	101	34	4	21	39	1.73
1897936--1898008	23	3.2	23	84	0	92	35	4	20	39	1.72
1897936--1898033	46	2.1	45	81	7	108	35	5	17	41	1.71
1898369--1898441	23	3.2	23	88	0	101	34	4	21	39	1.73
1897300--1899215	430	4.5	431	97	1	3612	40	7	12	39	1.72
1898799--1898871	23	3.2	23	88	0	101	34	4	21	39	1.73
1897300--1899215	863	2.2	860	97	1	3617	40	7	12	39	1.72
1901835--1901899	25	2.6	25	97	0	121	40	10	12	36	1.78
1902186--1902258	23	3.2	23	88	0	101	34	4	21	39	1.73
1903015--1903074	10	6.3	9	81	11	50	35	1	1	61	1.16
1903015--1903072	9	6.0	10	78	9	50	34	1	1	62	1.16
1904425--1904494	32	2.3	29	82	7	86	28	1	2	67	1.14
1915030--1915064	15	2.3	15	90	9	54	82	0	17	0	0.66
1915748--1915774	14	1.9	14	100	0	54	40	22	14	22	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1916743--1916796	22	2.5	22	96	0	99	38	27	11	22	1.88
1917196--1917233	19	2.0	19	85	10	51	36	0	2	60	1.11
1918546--1918625	22	3.7	21	76	12	74	23	5	0	71	1.06
1918567--1918697	3	44.7	3	69	17	53	25	4	1	68	1.17
1918598--1918668	20	3.6	21	73	16	62	19	5	1	73	1.11
1918775--1918857	2	41.5	2	100	0	166	49	0	0	50	1.00
1920988--1921047	30	2.0	30	100	0	120	26	26	16	30	1.97
1925910--1925966	32	1.9	30	82	13	73	75	0	3	21	0.95
1927788--1927820	9	3.6	9	92	8	57	0	9	0	90	0.44
1927788--1927820	10	3.4	10	95	4	59	0	9	0	90	0.44
1927745--1927854	50	2.2	49	80	11	116	16	15	6	61	1.53
1929196--1929240	6	7.3	6	80	5	54	75	2	2	20	1.01
1946344--1946376	16	2.1	17	88	11	52	57	0	0	42	0.98
1946561--1946704	10	14.3	10	69	15	77	38	2	2	56	1.26
1946650--1946703	9	5.8	9	84	4	63	37	0	0	62	0.95
1946645--1946702	29	2.0	29	93	6	100	36	0	0	63	0.94
1946640--1946842	9	21.2	9	67	14	61	44	1	1	52	1.21
1946780--1946821	20	2.1	20	82	8	50	45	4	0	50	1.23
1947433--1947489	19	2.9	19	75	25	57	38	1	0	59	1.08
1947794--1947860	16	4.2	16	78	0	62	10	16	29	43	1.81
1947763--1947856	32	2.9	32	87	3	136	11	15	29	42	1.83
1947783--1947873	32	2.8	32	83	3	85	14	14	27	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1951579--1951635	27	2.1	27	96	0	105	36	35	14	14	1.86
1951854--1951881	2	14.0	2	100	0	56	50	0	0	50	1.00
1953258--1953287	12	2.5	12	94	0	51	56	0	3	40	1.16
1953512--1953583	32	2.2	32	100	0	144	59	0	11	29	1.31
1954900--1954925	13	2.0	13	100	0	52	76	7	0	15	0.99
1954974--1955094	32	3.9	30	78	16	106	47	4	3	44	1.38
1954974--1955073	31	3.2	31	83	9	123	48	5	3	44	1.40
1954972--1955094	30	4.0	31	76	18	98	47	4	3	44	1.38
1955038--1955118	39	2.1	39	88	4	119	46	3	3	45	1.38
1955034--1955213	37	4.8	37	75	15	140	45	3	5	45	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14