genome.fa.s8217.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008217.1 Hibiscus syriacus cultivar Beakdansim tig00110847_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2417150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  6  of  14  ( 1575 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
892043--892122	7	11.3	7	78	6	63	17	0	31	51	1.46
892048--892121	14	5.3	14	81	0	85	17	0	31	51	1.46
892048--892122	21	3.6	21	88	0	114	17	0	30	52	1.45
892118--892142	6	4.2	6	100	0	50	32	0	0	68	0.90
892150--892217	20	3.2	20	80	11	82	38	7	1	52	1.38
892163--892207	23	2.0	23	90	0	72	37	6	2	53	1.40
892264--892360	18	4.9	18	75	18	86	41	9	8	41	1.67
892277--892458	20	9.2	20	71	18	89	41	9	7	42	1.64
892339--892469	33	4.1	33	80	9	171	41	9	6	43	1.61
892390--892525	2	63.0	2	69	21	71	41	7	4	46	1.52
892400--892518	53	2.2	53	88	4	168	41	8	4	46	1.53
892453--892525	20	3.6	20	80	15	80	43	6	2	46	1.44
892562--892716	33	4.5	33	79	13	170	43	7	6	41	1.59
892562--892839	51	5.3	51	77	15	287	43	7	5	42	1.57
892586--892836	18	14.1	18	69	17	159	44	7	5	41	1.58
892562--892836	109	2.6	107	84	5	308	44	8	5	42	1.58
892708--892825	33	3.8	33	70	17	117	43	7	5	43	1.57
892704--892825	58	2.1	58	89	0	190	43	7	5	43	1.56
893001--893073	6	12.3	6	73	23	50	47	0	1	50	1.09
892973--893098	28	4.6	27	77	18	109	49	0	1	48	1.16
896022--896060	16	2.4	16	91	0	60	33	17	28	20	1.96
896836--896887	20	2.5	20	78	9	52	46	15	13	25	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
896855--897496	191	3.3	196	84	5	850	40	13	14	31	1.84
897671--898027	131	2.7	131	88	1	502	43	13	11	31	1.80
898690--898897	42	4.9	43	86	4	296	33	19	24	23	1.97
898690--898897	85	2.4	85	88	4	312	33	19	24	23	1.97
899032--899092	21	2.9	21	97	0	113	52	21	6	19	1.68
902986--903397	164	2.5	166	84	3	537	31	18	18	31	1.95
902939--903398	41	11.2	41	70	13	214	31	18	19	31	1.96
905067--905098	14	2.4	14	90	10	50	25	9	0	65	1.22
910007--910063	29	2.0	29	86	6	80	50	0	1	47	1.11
910119--910160	20	2.2	19	86	4	57	64	2	0	33	1.07
910028--910252	120	1.9	117	80	6	258	45	8	8	38	1.64
910253--910292	19	2.0	20	85	9	55	60	2	7	30	1.38
911721--911773	3	19.0	3	81	14	60	66	1	0	32	1.03
911721--911776	19	3.0	18	79	7	67	66	1	0	32	1.03
911699--911777	22	3.8	21	77	14	74	62	1	0	36	1.04
911721--911784	22	2.9	22	77	13	69	67	3	0	29	1.06
912103--913118	113	9.0	113	90	1	1590	28	19	14	37	1.91
912459--912503	23	1.9	23	82	13	56	15	26	6	51	1.68
925332--925385	28	2.0	27	85	3	72	61	1	5	31	1.30
925973--926014	20	2.2	19	86	4	57	64	2	0	33	1.07
925882--926106	120	1.9	117	81	4	272	45	8	8	37	1.65
926203--926235	3	11.0	3	93	0	57	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
927545--927597	3	19.0	3	81	14	60	66	1	0	32	1.03
927545--927600	19	3.0	18	79	7	67	66	1	0	32	1.03
927523--927601	22	3.8	21	77	14	74	62	1	0	36	1.04
928495--928527	2	16.5	2	100	0	66	51	0	0	48	1.00
948873--948920	23	2.1	23	84	7	62	52	14	0	33	1.42
952157--952211	29	2.0	29	85	7	78	54	3	12	29	1.55
953449--953620	47	3.8	46	81	8	199	34	20	5	38	1.77
953720--953841	40	3.0	40	96	0	217	31	26	18	22	1.97
958483--958516	17	2.0	17	88	0	50	52	32	0	14	1.42
960495--960534	21	1.9	21	89	0	62	10	25	40	25	1.86
960515--960577	20	2.9	21	79	9	65	15	25	34	23	1.95
964388--964427	21	1.9	21	85	10	55	35	10	2	52	1.48
966475--966524	11	4.4	12	78	16	54	34	0	14	52	1.42
966729--966755	13	2.1	13	100	0	54	48	14	0	37	1.45
966827--966863	15	2.3	17	86	9	51	64	16	0	18	1.29
966876--966928	25	2.1	25	83	13	65	52	20	3	22	1.62
968543--968580	20	1.9	20	88	0	58	23	0	2	73	0.95
968725--968765	16	2.6	16	88	3	57	36	7	21	34	1.82
968817--968883	27	2.5	27	97	0	125	28	17	17	35	1.93
968937--968999	29	2.2	29	97	0	117	25	23	25	25	2.00
977502--977541	13	3.2	13	82	7	55	52	2	12	32	1.52
978115--978183	22	3.2	20	86	8	68	34	17	20	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
978130--978183	22	2.5	22	96	0	99	37	16	22	24	1.94
985854--985955	40	2.5	42	84	6	120	23	18	22	35	1.96
989989--990109	10	11.9	10	69	20	58	3	19	1	75	1.03
990010--990109	36	2.6	38	75	15	89	4	20	2	74	1.08
991031--991064	11	3.1	11	82	0	50	41	8	20	29	1.82
995711--995780	29	2.5	25	77	22	77	62	7	7	22	1.45
999870--999918	21	2.3	21	96	0	89	38	0	57	4	1.18
1001213--1001299	42	2.1	42	84	0	111	31	35	21	11	1.89
1001895--1001942	26	1.9	26	83	8	64	10	39	0	50	1.37
1002895--1002935	20	2.0	20	86	9	57	29	17	34	19	1.94
1003539--1003583	21	2.2	20	80	11	54	22	11	6	60	1.54
1006719--1006860	21	6.7	21	83	7	189	22	38	18	20	1.93
1007026--1007065	20	1.9	21	85	10	55	37	37	10	15	1.80
1010339--1010392	20	2.7	20	88	0	81	22	37	11	29	1.89
1011595--1011619	10	2.5	10	100	0	50	60	12	20	8	1.57
1011919--1012044	21	5.9	21	71	3	108	27	14	24	33	1.94
1014355--1014401	23	1.9	25	87	12	71	6	12	6	74	1.20
1014377--1014418	15	2.6	16	85	14	59	11	16	9	61	1.55
1022731--1022763	15	2.2	15	100	0	66	6	27	33	33	1.81
1023401--1023579	60	3.0	60	78	1	189	34	17	4	43	1.69
1027442--1027534	46	2.0	46	97	0	177	27	10	22	38	1.87
1028238--1028269	17	1.9	17	93	6	57	28	3	0	68	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1033871--1033945	21	3.6	21	87	3	98	29	28	14	28	1.95
1033917--1033966	26	1.9	26	95	0	91	32	26	14	28	1.94
1037905--1037954	21	2.4	21	93	0	82	20	12	30	38	1.88
1037948--1038020	23	3.2	23	94	0	119	23	21	24	30	1.99
1037927--1038102	44	4.0	44	78	8	194	26	18	24	30	1.98
1037952--1038102	23	6.7	23	70	21	88	27	19	23	29	1.98
1039664--1039748	34	2.5	34	94	1	145	31	32	0	35	1.58
1039806--1039838	2	16.5	2	100	0	66	48	0	0	51	1.00
1045935--1045974	21	1.9	21	85	10	55	35	10	2	52	1.48
1047921--1048077	65	2.4	65	84	5	194	28	19	21	30	1.97
1047921--1048127	65	3.2	63	76	13	174	27	18	22	30	1.98
1051470--1051570	21	4.8	21	75	13	100	18	17	28	34	1.94
1051492--1051576	43	2.0	44	92	2	145	21	18	28	31	1.97
1054441--1054511	31	2.3	30	80	7	81	46	2	15	35	1.61
1055945--1055981	20	1.9	19	89	10	58	45	10	24	18	1.81
1056132--1056161	15	2.0	15	93	0	51	56	0	0	43	0.99
1059555--1059760	74	2.7	75	93	3	353	22	26	30	20	1.98
1062077--1062116	21	1.9	21	89	0	62	10	25	40	25	1.86
1062097--1062159	20	2.9	21	79	9	65	15	25	34	23	1.95
1068416--1068464	21	2.2	22	85	7	64	61	4	6	28	1.38
1070470--1070582	3	37.7	3	100	0	226	32	0	0	67	0.91
1070663--1070716	2	27.0	2	100	0	108	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1077917--1077956	13	3.2	13	86	13	50	12	0	40	47	1.41
1081882--1081942	31	2.0	31	83	6	79	37	8	18	36	1.80
1082733--1082801	31	2.3	30	82	9	79	36	7	21	34	1.81
1085267--1085334	30	2.3	30	84	0	82	20	27	7	44	1.78
1085281--1085338	30	1.9	30	92	0	98	18	31	3	46	1.66
1087072--1087105	13	2.6	13	100	0	68	35	29	0	35	1.58
1087281--1087333	27	2.0	27	81	7	63	45	7	18	28	1.77
1094648--1094690	17	2.4	18	84	7	61	30	0	6	62	1.21
1100285--1100368	42	2.0	42	86	8	120	57	7	3	32	1.43
1100733--1100850	51	2.3	53	79	12	122	58	1	5	34	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14