genome.fa.s8217.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008217.1 Hibiscus syriacus cultivar Beakdansim tig00110847_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2417150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  9  of  14  ( 1575 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1461731--1462586	421	2.0	420	94	2	1510	39	12	7	40	1.71
1462313--1462384	23	3.2	22	84	4	90	38	20	4	36	1.72
1462722--1462786	25	2.6	25	97	0	121	36	12	10	40	1.78
1465375--1465420	23	2.0	23	100	0	92	26	17	17	39	1.91
1466519--1466587	3	23.0	3	81	0	84	26	33	5	34	1.80
1466519--1466602	12	7.1	12	86	2	89	23	33	7	35	1.82
1466557--1466610	12	4.6	12	86	4	74	16	35	11	37	1.84
1467896--1469266	200	6.9	200	97	0	2568	31	17	14	36	1.90
1469345--1469405	19	3.3	18	88	2	59	52	11	1	34	1.47
1469357--1469405	19	2.6	19	96	0	89	55	10	2	32	1.45
1470770--1470802	13	2.5	13	100	0	66	18	27	21	33	1.96
1471209--1471274	33	2.0	33	90	0	105	22	48	0	28	1.51
1471308--1471372	21	3.1	21	88	0	85	18	27	10	43	1.83
1473395--1473447	24	2.2	24	83	6	63	26	7	13	52	1.66
1473587--1473629	20	2.3	18	85	14	61	20	16	11	51	1.75
1473773--1473823	20	2.5	20	84	12	68	15	13	13	56	1.67
1473559--1474031	181	2.6	182	88	1	698	26	17	14	41	1.87
1474098--1474591	228	2.2	227	95	1	891	39	8	8	44	1.64
1481306--1481395	39	2.3	39	86	0	135	34	24	21	20	1.96
1481816--1481851	3	11.7	3	94	5	63	69	0	0	30	0.89
1482189--1482236	18	2.7	18	83	0	60	33	27	20	18	1.96
1486642--1486941	60	5.0	60	86	4	390	38	20	17	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1490308--1490534	60	3.8	60	82	6	264	37	19	18	25	1.94
1492258--1492415	21	7.8	20	72	7	86	38	25	17	18	1.92
1492382--1492576	20	9.6	20	79	6	205	36	25	18	18	1.94
1492382--1492576	60	3.2	60	81	1	237	36	25	18	18	1.94
1492960--1493030	33	2.2	33	92	0	115	11	22	18	47	1.80
1493110--1493219	21	5.8	20	74	17	108	45	18	24	11	1.83
1493103--1493219	41	3.1	38	81	14	145	46	17	25	11	1.81
1493170--1493226	14	3.7	14	75	20	60	43	22	24	8	1.81
1493162--1493242	33	2.5	33	95	0	144	46	22	22	8	1.78
1493238--1493335	19	5.7	19	68	22	81	10	22	22	44	1.82
1493260--1493349	14	5.7	14	69	23	63	8	23	23	44	1.81
1493243--1493357	33	3.5	33	95	0	212	9	22	20	46	1.79
1495052--1495425	93	4.1	93	97	1	709	21	13	19	45	1.84
1495056--1495426	184	2.0	184	97	1	708	21	13	19	46	1.83
1495528--1495599	14	4.8	13	77	22	63	44	29	19	6	1.77
1495509--1495585	33	2.3	32	86	6	109	46	27	18	7	1.76
1495491--1495615	47	2.5	49	87	11	168	46	28	17	7	1.75
1495473--1495571	19	5.4	19	76	12	100	46	28	16	9	1.77
1495611--1495745	19	7.6	19	75	16	128	11	19	23	45	1.82
1495633--1495689	14	3.7	14	77	20	60	10	21	22	45	1.82
1495616--1495708	33	2.8	33	95	0	168	10	20	21	47	1.80
1497662--1497697	14	2.6	14	95	0	63	33	0	22	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1497804--1497901	19	5.4	19	84	13	143	45	17	22	14	1.84
1497804--1497919	53	2.2	53	98	1	225	43	18	24	13	1.86
1497948--1498112	19	9.4	19	76	19	189	13	21	18	46	1.83
1497926--1498084	52	3.0	52	99	0	309	13	23	16	45	1.83
1497926--1498126	33	5.9	33	75	15	212	13	22	18	45	1.84
1500598--1500644	24	2.0	24	87	8	69	38	21	14	25	1.92
1501254--1501483	20	11.5	20	84	1	228	19	18	24	37	1.94
1501470--1501552	21	4.0	21	71	6	69	25	16	22	34	1.95
1503620--1503836	109	2.0	109	86	1	301	34	15	11	38	1.84
1504501--1504760	129	2.0	129	92	0	430	29	13	19	38	1.89
1511025--1511078	26	2.2	25	87	12	76	29	1	0	68	1.00
1519178--1519219	21	1.9	22	85	9	59	21	7	26	45	1.77
1520371--1520602	115	2.0	115	100	0	464	40	15	13	31	1.86
1521349--1521562	115	1.9	114	91	1	347	35	11	11	42	1.76
1526011--1526117	45	2.3	46	90	4	164	28	19	22	28	1.98
1526164--1526201	20	1.9	20	88	0	58	21	15	31	31	1.94
1532146--1532179	16	2.1	16	100	0	68	32	20	5	41	1.76
1534713--1534835	64	1.9	62	85	5	140	27	18	23	30	1.98
1534874--1534911	20	1.9	20	94	0	67	18	15	34	31	1.92
1537543--1537588	21	2.2	21	88	3	67	45	30	13	10	1.77
1538205--1538230	2	13.0	2	100	0	52	50	0	0	50	1.00
1538583--1538649	26	2.3	30	80	14	79	50	4	1	43	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1538937--1538989	22	2.3	23	80	3	63	60	9	7	22	1.53
1544731--1544835	20	5.2	20	81	5	122	40	25	14	20	1.90
1544743--1544880	60	2.3	60	82	8	158	36	24	13	24	1.92
1544742--1544912	20	8.6	20	80	11	124	36	23	12	27	1.91
1544807--1544913	19	5.5	19	82	8	101	34	22	11	31	1.89
1545847--1545900	24	2.2	24	90	0	81	22	18	18	40	1.91
1548811--1548863	20	2.7	20	90	0	88	49	20	18	11	1.78
1549254--1549304	22	2.3	22	93	0	84	23	13	43	19	1.87
1549427--1549480	20	2.7	20	82	5	65	18	11	18	51	1.74
1549482--1549528	20	2.3	20	92	0	76	27	19	17	36	1.93
1549555--1549629	19	3.8	20	79	13	84	22	13	29	34	1.92
1549556--1549629	20	3.8	19	75	12	78	22	13	29	33	1.93
1553950--1553990	3	13.7	3	85	10	57	68	4	0	26	1.10
1553950--1554001	6	8.8	6	87	10	54	69	7	0	23	1.14
1560246--1560289	23	2.0	22	82	13	54	25	9	9	56	1.59
1565915--1565960	2	23.0	2	100	0	92	50	0	0	50	1.00
1565966--1566001	16	2.3	16	90	4	56	61	8	0	30	1.26
1566465--1566583	48	2.5	48	100	0	238	41	16	19	22	1.90
1567235--1567412	29	6.2	29	79	7	157	42	20	3	33	1.70
1567425--1567497	18	4.2	17	91	3	119	13	23	46	16	1.82
1573199--1573249	2	25.5	2	100	0	102	49	0	0	50	1.00
1573793--1573849	27	2.1	27	93	6	98	47	14	12	26	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1574533--1574669	27	4.9	28	80	7	118	37	21	3	37	1.71
1574521--1574669	57	2.6	56	79	7	165	38	22	4	34	1.73
1574494--1574669	29	6.1	29	78	6	144	40	21	3	34	1.72
1574690--1574750	18	3.5	17	80	13	70	13	21	45	19	1.84
1575575--1575746	86	2.0	86	90	2	274	37	11	16	34	1.84
1576384--1576424	21	2.0	21	90	0	64	31	21	7	39	1.81
1577916--1578423	255	2.0	253	96	3	950	43	5	14	36	1.69
1585745--1585812	20	3.4	20	93	0	118	23	30	13	32	1.93
1587768--1587810	21	2.0	21	91	8	70	37	0	13	48	1.43
1587880--1588001	45	2.6	48	78	11	139	46	2	5	45	1.40
1588191--1588252	21	3.0	21	90	0	97	14	20	19	45	1.85
1588187--1588259	21	3.5	21	86	0	92	17	21	20	39	1.92
1588249--1588342	20	4.7	20	81	7	127	37	20	20	22	1.95
1588249--1588342	41	2.3	40	85	5	127	37	20	20	22	1.95
1588342--1588435	20	4.7	20	94	0	152	30	25	19	24	1.98
1589277--1589330	24	2.2	24	90	0	81	22	16	20	40	1.91
1590042--1590109	20	3.4	20	95	0	127	23	29	13	33	1.93
1592065--1592107	21	2.0	21	91	8	70	37	0	13	48	1.43
1592142--1592213	36	2.1	36	81	5	85	48	2	4	44	1.36
1592177--1592298	45	2.6	48	78	11	139	46	2	5	45	1.40
1592484--1592535	21	2.5	22	81	6	63	19	23	19	38	1.93
1592525--1592617	20	4.7	20	76	7	91	33	21	20	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1592585--1592651	20	3.4	20	87	2	91	29	25	17	26	1.98
1593491--1593544	24	2.2	24	90	6	83	22	16	20	40	1.91
1595976--1596084	20	5.4	21	85	4	138	34	22	22	20	1.96
1596188--1596241	14	3.5	14	73	22	54	11	24	20	44	1.83
1596166--1596261	33	2.8	33	90	3	138	12	22	20	43	1.86
1596367--1596403	14	2.6	14	86	0	56	48	21	0	29	1.50
1597798--1597890	42	2.2	42	80	3	107	22	17	39	20	1.92
1598370--1598498	20	6.4	20	87	0	150	38	23	18	19	1.93
1598370--1598498	60	2.2	60	84	0	168	38	23	18	19	1.93
1598543--1598717	20	9.4	20	74	17	144	19	18	20	42	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14