genome.fa.s8217.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008217.1 Hibiscus syriacus cultivar Beakdansim tig00110847_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2417150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  4  of  14  ( 1575 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
600756--600792	18	2.1	18	89	0	56	24	24	21	29	1.99
603707--603759	21	2.5	21	100	0	106	20	18	26	33	1.96
606841--606895	22	2.5	22	84	3	74	45	1	9	43	1.46
609734--609843	56	2.0	56	100	0	220	35	38	16	10	1.82
610726--610931	109	1.9	109	82	7	258	20	12	15	51	1.74
619272--620279	140	7.3	140	84	1	1181	34	15	22	28	1.94
620557--620601	23	2.0	23	86	0	63	44	40	13	2	1.56
624845--624898	22	2.4	22	90	3	81	44	3	9	42	1.54
627486--627618	59	2.2	59	84	6	162	33	13	18	35	1.89
644001--644060	30	2.0	30	96	0	111	38	11	10	40	1.75
651181--651209	14	2.0	15	93	6	51	51	0	0	48	1.00
653100--653165	30	2.2	31	89	8	100	66	9	9	15	1.43
653189--653253	30	2.2	30	85	0	85	58	9	10	21	1.59
654650--654690	20	2.0	20	86	9	57	68	2	0	29	1.03
654947--655215	40	6.4	40	69	13	182	22	18	34	24	1.96
654906--655045	43	3.3	42	73	9	115	21	18	35	24	1.95
654901--655087	83	2.3	83	89	0	275	20	18	36	24	1.95
654980--655363	130	2.9	129	86	2	527	25	17	32	25	1.97
655417--655492	34	2.2	36	78	7	84	42	14	19	23	1.88
655433--655504	35	2.1	35	97	2	137	33	11	23	31	1.90
655434--655514	34	2.5	32	86	9	85	38	12	22	27	1.90
655467--655686	67	3.4	64	82	9	261	42	13	16	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
655756--655825	32	2.2	32	92	0	113	30	24	17	28	1.97
656870--656911	13	3.4	12	84	12	50	2	9	7	80	0.97
656881--656918	13	2.9	14	92	7	62	0	13	7	78	0.94
656881--656918	14	2.8	13	88	7	58	0	13	7	78	0.94
656887--656937	20	2.6	21	78	12	63	0	15	9	74	1.06
656896--656955	20	2.6	24	77	20	74	0	20	11	68	1.20
660650--660734	29	2.9	29	85	1	89	60	12	10	16	1.60
660662--660736	29	2.5	30	86	4	107	58	13	10	17	1.62
660731--660805	30	2.5	30	84	0	96	58	9	10	21	1.59
661952--661990	20	2.0	20	89	0	60	23	25	46	5	1.73
662234--662285	3	16.3	3	88	11	77	65	0	0	34	0.93
667422--667461	2	20.0	2	100	0	80	50	0	0	50	1.00
667594--667628	15	2.3	15	90	0	52	57	2	8	31	1.44
675161--675225	3	22.3	3	78	12	73	67	1	3	27	1.14
675164--675228	32	2.0	32	91	5	105	66	3	4	26	1.26
675429--675662	40	5.6	42	72	15	146	25	19	32	22	1.97
675469--675662	40	4.6	41	71	14	148	26	19	31	22	1.97
675390--675720	128	2.6	128	96	0	610	25	18	30	25	1.98
675907--676083	66	2.7	63	77	8	176	37	15	21	24	1.93
676845--676968	65	1.9	65	82	11	155	45	10	12	30	1.76
676923--676985	29	2.1	30	88	2	92	38	15	9	36	1.81
676933--676993	29	2.1	29	81	6	70	47	16	8	27	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
676973--677075	52	2.0	53	94	1	181	35	18	13	32	1.90
677071--677179	30	3.9	26	82	10	76	47	14	10	27	1.76
677085--677195	30	4.0	28	80	11	113	46	16	10	26	1.79
677085--677181	30	3.4	30	85	5	123	46	15	10	27	1.78
677485--677611	35	3.6	35	77	11	102	35	13	19	31	1.91
677485--677579	36	2.7	35	81	3	111	34	12	18	33	1.89
677554--677784	105	2.2	101	84	7	288	38	12	19	29	1.88
677759--677838	35	2.3	34	76	8	81	31	12	20	36	1.89
677332--677908	271	2.2	256	82	9	646	39	11	17	31	1.85
677915--678048	35	3.8	33	78	13	135	35	14	18	32	1.91
677915--678047	69	1.9	70	87	1	196	34	14	18	32	1.91
679813--679846	12	2.8	12	86	4	50	5	11	11	70	1.32
679829--679866	20	1.9	20	88	0	58	2	15	10	71	1.25
680447--680517	20	3.1	23	70	22	76	42	11	22	23	1.86
680435--680509	20	3.5	20	70	20	62	37	10	25	26	1.89
680446--680524	26	3.3	25	69	20	78	44	10	21	24	1.83
680414--680526	46	2.4	45	82	4	145	40	10	23	25	1.86
682311--682662	177	2.0	174	98	1	677	26	24	21	28	1.99
684793--684840	24	2.0	25	87	4	71	66	0	12	20	1.24
685246--685285	20	2.1	19	95	4	71	55	5	15	25	1.60
691638--691690	24	2.2	24	93	0	88	62	13	9	15	1.54
692031--692069	17	2.2	19	86	13	57	35	2	0	61	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
698587--698643	18	3.2	18	87	0	87	19	45	22	12	1.83
698591--698663	36	2.0	37	86	5	103	20	38	26	15	1.92
699943--699976	18	1.9	18	88	5	52	50	0	20	29	1.49
702994--703050	18	3.2	18	87	0	87	19	45	22	12	1.83
704340--704373	18	1.9	18	88	5	52	50	0	20	29	1.49
707840--707888	18	2.7	18	90	0	71	16	51	18	14	1.77
707867--707941	31	2.4	31	80	6	80	18	40	21	20	1.92
707885--707916	13	2.5	13	94	0	55	18	37	25	18	1.94
709241--709274	18	1.9	18	88	5	52	50	0	20	29	1.49
711957--712000	22	2.0	23	86	4	63	43	4	6	45	1.51
712778--712840	12	5.2	12	79	7	65	47	11	15	25	1.79
712783--712858	24	3.2	23	81	7	89	42	10	21	26	1.85
713691--713786	46	2.1	46	82	5	115	36	22	21	18	1.95
713718--713786	23	3.0	23	80	0	84	31	24	24	18	1.98
713862--714048	45	4.2	45	90	1	252	36	19	7	36	1.80
713873--714003	16	8.7	15	67	21	62	38	19	7	34	1.81
713862--714048	89	2.1	89	85	2	250	36	19	7	36	1.80
713906--714077	90	1.9	89	80	7	195	36	18	8	37	1.80
717174--717198	2	12.5	2	100	0	50	52	0	0	48	1.00
717457--717503	8	5.4	8	81	18	58	80	0	0	19	0.70
718854--718925	19	3.5	19	68	20	56	40	2	2	54	1.29
719664--719719	21	2.6	21	72	16	51	39	8	19	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
723190--723387	27	7.3	27	90	0	297	28	16	13	41	1.85
725989--726019	14	2.1	15	94	5	55	51	0	3	45	1.17
726997--727110	60	1.9	59	92	1	192	42	8	11	37	1.72
727312--727369	28	2.1	28	90	6	91	34	6	18	39	1.78
729672--729808	21	6.6	21	80	6	163	32	22	21	23	1.98
729709--729832	62	2.0	62	95	0	221	33	20	20	25	1.97
729720--730023	62	5.1	60	73	17	190	27	21	22	28	1.99
729817--730024	21	9.5	22	73	13	155	23	22	23	30	1.99
729807--730030	112	2.0	113	98	0	432	25	21	22	31	1.98
730142--730167	6	4.3	6	100	0	52	34	50	15	0	1.45
730634--731079	6	75.0	6	90	1	531	0	25	40	34	1.56
732429--732690	138	1.9	138	88	3	402	41	17	13	28	1.87
735555--735608	21	2.6	21	96	0	99	27	18	16	37	1.93
735690--735729	19	2.0	20	90	4	64	37	17	7	37	1.78
737043--737090	19	2.5	20	86	3	62	33	12	6	47	1.66
739163--739187	13	1.9	13	100	0	50	52	16	24	8	1.70
744704--744749	15	3.1	15	96	0	83	34	13	10	41	1.79
750632--750697	34	1.9	34	84	9	89	42	3	4	50	1.38
750638--750789	82	1.9	82	90	0	241	41	3	9	46	1.52
754713--754746	16	2.1	16	88	0	50	14	11	17	55	1.68
754931--754961	5	6.2	5	100	0	62	0	61	0	38	0.96
756260--756342	42	2.0	42	97	0	157	56	1	4	37	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
759091--759132	20	2.1	20	90	0	66	33	11	23	30	1.91
760388--760422	3	11.7	3	93	0	61	2	34	0	62	1.10
760960--761118	64	2.5	64	82	4	178	35	20	16	27	1.94
761743--761900	31	5.1	31	94	1	273	18	17	23	40	1.91
762485--762721	118	2.0	118	96	0	438	30	10	21	36	1.88
764966--765000	3	11.7	3	93	0	61	2	34	0	62	1.10
766351--766475	31	4.0	31	91	2	198	20	20	22	37	1.94
767644--767683	20	2.0	20	85	0	53	25	22	17	35	1.95
768560--768613	27	2.0	28	85	10	76	42	22	14	20	1.88
774530--774575	23	2.0	24	83	12	60	39	2	10	47	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14