genome.fa.s8217.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008217.1 Hibiscus syriacus cultivar Beakdansim tig00110847_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2417150

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  8  of  14  ( 1575 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1304767--1304840	38	1.9	38	100	0	148	28	20	21	29	1.98
1309930--1309979	11	4.9	11	74	18	54	30	20	8	42	1.80
1309929--1309988	29	2.1	29	100	0	120	30	21	6	41	1.79
1310049--1310089	21	2.0	21	90	0	64	19	12	41	26	1.87
1311072--1311102	2	15.5	2	100	0	62	48	0	0	51	1.00
1311278--1311309	2	16.5	2	93	6	57	46	0	0	53	1.00
1315659--1315741	2	41.5	2	100	0	166	50	0	0	49	1.00
1316233--1316293	28	2.2	27	85	2	77	49	3	8	39	1.49
1316233--1316449	26	7.6	29	72	20	131	46	1	9	42	1.46
1316256--1316324	33	2.2	32	80	10	79	53	4	4	37	1.41
1316233--1316349	27	4.2	26	72	22	78	50	2	6	40	1.43
1316308--1316393	32	2.7	34	76	18	87	46	2	6	44	1.43
1316527--1316567	16	2.5	16	88	4	55	24	2	4	68	1.22
1318199--1318225	2	13.5	2	100	0	54	48	0	0	51	1.00
1322252--1322343	48	1.9	49	82	6	118	48	5	1	44	1.32
1322340--1322519	97	1.9	97	83	4	238	40	9	8	41	1.67
1322643--1322731	3	30.0	3	95	2	162	66	0	1	32	0.99
1323581--1323619	13	3.2	12	86	13	53	0	10	7	82	0.86
1323870--1323899	16	1.9	15	93	6	51	20	20	20	40	1.92
1324054--1324113	3	19.7	3	83	10	77	65	0	0	35	0.93
1324258--1324313	22	2.5	22	100	0	112	16	23	12	48	1.80
1324298--1324353	16	3.2	16	72	18	58	21	19	10	48	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1324281--1324362	36	2.2	38	84	10	123	18	24	8	48	1.75
1324303--1324362	20	3.2	19	69	26	56	18	25	6	50	1.71
1324290--1324362	36	2.0	36	94	0	128	19	23	9	47	1.78
1324408--1325077	112	6.0	111	89	4	775	30	17	14	37	1.90
1324408--1325062	224	2.9	224	86	6	885	30	18	13	37	1.90
1325765--1325984	114	1.9	114	86	1	316	31	18	14	35	1.91
1326658--1326762	38	2.7	38	81	12	126	0	20	0	79	0.80
1326656--1326746	31	2.9	30	85	9	121	0	19	0	80	0.72
1326657--1326762	40	2.8	37	81	14	126	0	19	0	79	0.79
1326656--1326748	37	2.4	39	86	10	122	0	19	0	80	0.71
1326666--1326750	14	6.5	13	74	17	70	0	18	0	81	0.70
1326666--1326761	24	4.3	24	77	15	75	1	18	0	80	0.78
1334364--1334397	12	2.8	12	90	0	59	8	35	0	55	1.31
1337759--1337849	48	1.9	49	84	8	127	50	4	1	43	1.29
1337931--1337970	16	2.6	16	82	17	50	52	0	0	47	1.00
1338140--1338187	3	16.3	3	82	4	62	62	0	6	31	1.20
1338140--1338182	9	4.8	9	97	0	77	60	0	6	32	1.23
1339514--1339573	3	19.7	3	83	10	77	66	0	0	33	0.92
1347927--1348171	131	1.9	131	81	5	298	36	19	13	30	1.90
1351229--1351366	60	2.3	60	84	0	168	37	15	15	31	1.89
1356184--1356233	20	2.5	19	84	9	64	46	2	2	50	1.24
1356461--1356508	23	2.1	22	84	3	60	56	2	0	41	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1356455--1356515	17	3.6	16	76	10	59	54	1	0	44	1.10
1356474--1356523	22	2.2	21	86	10	64	52	0	0	48	1.00
1356786--1356866	9	9.0	9	79	0	81	25	33	4	35	1.78
1356791--1356883	12	7.8	12	85	0	87	22	33	6	37	1.80
1356791--1356883	18	5.2	18	79	5	89	22	33	6	37	1.80
1356786--1356866	6	13.5	6	86	0	81	25	33	4	35	1.78
1358341--1359510	199	5.9	199	96	1	2053	30	17	15	37	1.91
1359631--1359679	19	2.6	19	93	0	80	57	10	2	30	1.43
1361461--1361526	33	2.0	33	90	0	105	22	48	0	28	1.51
1361560--1361603	21	2.1	21	91	0	70	15	31	11	40	1.83
1363766--1364227	175	2.6	175	83	9	546	26	16	13	43	1.86
1365950--1366051	51	2.0	51	100	0	204	13	21	31	33	1.92
1366087--1366195	3	36.0	3	85	10	127	66	0	1	31	1.02
1366500--1366691	84	2.3	84	90	3	298	26	17	17	38	1.92
1366583--1366971	123	3.2	123	94	0	681	25	19	14	40	1.89
1366420--1366816	207	1.9	208	84	5	534	26	17	14	41	1.88
1368230--1368273	18	2.3	19	88	7	63	56	4	6	31	1.46
1380161--1380189	14	2.1	14	100	0	58	72	0	0	27	0.85
1381671--1381747	3	25.3	3	89	7	104	68	0	1	29	0.97
1381933--1382009	34	2.3	34	97	0	145	49	22	2	25	1.63
1384087--1384120	2	17.0	2	100	0	68	50	0	0	50	1.00
1388684--1388757	20	3.6	21	81	3	89	29	24	28	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1388674--1388757	41	2.0	41	86	8	118	28	26	27	17	1.98
1388778--1388876	42	2.4	41	85	10	121	23	20	34	22	1.97
1388779--1388876	21	4.7	20	81	10	108	23	20	33	22	1.97
1388956--1389013	30	2.0	29	86	10	82	44	17	3	34	1.65
1388956--1389015	29	2.0	30	90	6	95	43	16	5	35	1.70
1390288--1390335	19	2.5	20	82	3	62	31	10	6	52	1.60
1391621--1391703	20	4.0	21	81	7	91	26	26	26	20	1.99
1391630--1391703	20	3.7	20	87	3	103	28	24	27	20	1.99
1391621--1391703	41	2.0	41	88	4	123	26	26	26	20	1.99
1391722--1391822	42	2.4	41	82	12	125	23	19	33	22	1.97
1391725--1391822	21	4.7	20	80	13	108	23	20	32	23	1.98
1391891--1391959	29	2.3	30	87	9	97	47	15	4	31	1.65
1391901--1391960	29	2.0	30	93	6	104	46	16	3	33	1.64
1395615--1395671	22	2.5	22	85	2	69	15	21	28	35	1.94
1397001--1397127	65	2.0	65	87	6	186	29	15	24	29	1.96
1397002--1397150	65	2.3	64	82	11	160	30	16	22	30	1.96
1397775--1397846	26	2.8	26	78	4	65	51	16	4	27	1.63
1399813--1399907	21	4.3	21	75	17	77	27	20	23	29	1.98
1399813--1399907	45	2.1	44	85	12	124	27	20	23	29	1.98
1399807--1399892	24	3.8	23	76	16	90	26	20	22	30	1.98
1405544--1405599	21	2.7	21	94	0	94	26	19	28	25	1.99
1405659--1405783	65	1.9	65	88	6	191	29	16	23	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1405660--1405815	65	2.4	65	84	8	185	29	17	21	30	1.97
1411429--1411490	32	1.9	32	83	6	81	33	1	4	59	1.28
1411467--1411514	19	2.4	19	86	6	60	35	2	0	62	1.07
1413704--1413804	40	2.5	40	83	3	132	32	21	17	27	1.96
1413709--1413782	19	3.7	19	77	15	69	31	18	21	28	1.97
1414732--1414826	21	4.5	21	82	5	102	15	16	27	40	1.89
1414732--1414845	42	2.7	42	87	1	149	16	17	25	40	1.90
1414752--1414904	21	7.5	21	78	10	122	19	16	26	37	1.92
1418960--1418993	17	2.1	16	88	5	50	35	0	0	64	0.94
1426282--1426391	32	3.7	32	71	20	121	30	8	35	26	1.85
1429168--1429234	31	2.2	31	88	0	98	34	8	8	47	1.66
1430626--1430762	43	3.2	44	75	9	131	30	18	25	25	1.98
1430642--1430825	43	4.3	43	77	5	120	28	21	21	28	1.99
1430758--1430869	43	2.5	42	79	11	109	22	26	18	32	1.97
1431210--1431263	21	2.6	21	87	0	72	0	38	18	42	1.50
1431224--1431316	21	4.4	21	76	2	71	3	38	17	40	1.65
1439880--1440000	41	3.0	42	85	3	167	33	17	14	33	1.91
1443727--1443977	125	2.0	125	100	0	502	27	21	23	26	1.99
1445676--1445733	21	2.5	23	84	15	84	46	5	0	48	1.24
1445676--1445748	27	3.0	25	86	11	91	46	4	0	49	1.21
1445686--1445748	25	2.4	25	84	10	83	47	3	0	49	1.17
1447879--1447915	14	2.6	15	83	8	51	62	0	0	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1452755--1452840	3	29.0	3	96	2	156	65	0	0	34	0.93
1454202--1454232	16	1.9	16	100	0	62	58	22	12	6	1.58
1454941--1454994	13	4.3	13	73	23	53	51	25	12	9	1.70
1454934--1454993	23	2.6	23	89	5	86	53	25	11	10	1.68
1455288--1455344	14	4.4	14	78	17	59	54	24	12	8	1.65
1455269--1455343	24	3.1	24	86	0	105	56	21	10	12	1.66
1454773--1455477	351	2.0	348	97	2	1310	39	16	14	29	1.88
1455560--1455598	2	19.5	2	100	0	78	48	0	0	51	1.00
1455798--1455823	2	13.0	2	100	0	52	50	0	0	50	1.00
1461900--1461963	23	2.8	23	95	0	110	35	23	4	35	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14