genome.fa.s8228.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008228.1 Hibiscus syriacus cultivar Beakdansim tig00110864_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3739947

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  2  of  20  ( 2363 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304809--305026	85	2.5	87	78	8	214	51	5	17	24	1.66
304849--305145	129	2.3	130	79	6	300	51	6	17	24	1.69
305308--305334	2	13.5	2	100	0	54	51	0	0	48	1.00
313601--313633	14	2.4	14	100	0	66	51	12	0	36	1.39
314016--314067	22	2.4	22	93	0	86	46	19	1	32	1.61
314194--314362	39	4.3	39	81	4	187	36	2	2	57	1.29
314186--314345	79	2.0	80	85	6	218	33	3	3	60	1.30
314398--314439	22	1.9	22	90	0	66	52	2	2	42	1.27
319240--319397	21	7.8	20	72	7	86	38	25	17	18	1.92
319364--319514	20	7.6	20	84	3	187	34	25	20	19	1.96
319364--319537	60	2.9	60	81	0	204	36	24	19	19	1.95
319919--319989	33	2.2	33	89	0	106	11	23	16	47	1.79
320069--320174	19	5.7	19	73	15	78	42	20	24	12	1.86
320127--320183	14	3.7	14	77	20	60	45	22	22	8	1.80
320110--320199	33	2.7	33	91	0	135	43	25	22	8	1.82
320195--320292	19	5.7	19	70	22	81	10	24	22	42	1.84
320217--320306	14	5.7	14	74	23	81	8	25	23	42	1.83
320200--320314	33	3.5	33	95	0	212	9	24	20	45	1.81
322013--322579	93	6.1	93	99	0	1107	22	12	19	45	1.83
322623--322751	19	7.3	19	75	17	125	45	28	17	8	1.77
322659--322751	33	2.8	32	91	4	150	46	27	18	7	1.76
322623--322751	52	2.5	52	74	14	140	45	28	17	8	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322747--322881	19	7.6	19	73	16	119	11	19	23	45	1.83
322769--322825	14	3.7	14	77	20	60	10	21	22	45	1.82
322752--322844	33	2.8	33	93	0	159	11	20	21	46	1.82
324806--324841	14	2.6	14	95	0	63	33	0	22	44	1.53
324948--325047	19	5.5	19	84	12	147	45	17	23	15	1.85
324948--325064	53	2.2	53	95	1	209	43	17	24	14	1.86
325054--325202	19	8.6	19	73	21	139	15	22	18	43	1.87
325054--325170	52	2.2	52	95	0	207	16	21	17	44	1.87
325111--325202	33	2.8	33	98	1	175	13	23	18	44	1.85
325130--325184	14	3.6	14	73	21	56	10	23	20	45	1.82
325265--325358	19	5.2	19	83	13	135	46	17	21	14	1.83
325265--325377	53	2.2	52	96	1	208	45	17	23	14	1.85
325872--326120	20	12.4	20	88	1	266	20	17	25	36	1.94
329931--330005	33	2.3	33	86	4	98	62	10	2	24	1.40
331797--331856	30	2.0	30	100	0	120	30	13	10	46	1.75
335674--335715	22	2.0	22	86	13	61	30	11	9	47	1.72
339167--339198	2	16.0	2	100	0	64	50	0	0	50	1.00
341553--341595	21	2.0	21	86	0	59	32	16	16	34	1.91
344958--345306	177	2.0	177	94	1	610	37	16	15	30	1.89
352436--352603	21	7.9	21	80	2	183	23	15	25	35	1.94
352476--352606	65	2.0	65	85	2	174	25	14	24	35	1.93
353702--353749	21	2.3	20	75	3	51	39	6	10	43	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
355440--355486	21	2.2	21	80	0	58	19	25	17	38	1.92
355482--355593	20	5.6	20	81	2	125	38	18	19	23	1.93
355482--355608	40	3.2	39	82	5	137	39	18	18	23	1.92
356470--356523	24	2.2	24	90	0	81	22	16	20	40	1.91
358979--359038	20	3.0	20	90	9	104	35	25	23	16	1.95
359043--359088	19	2.4	19	88	0	65	50	15	19	15	1.79
359010--359130	53	2.3	53	86	2	172	44	18	23	14	1.85
358948--359129	20	9.8	20	69	14	59	43	19	21	15	1.87
359139--359223	33	2.5	33	84	1	116	14	24	17	43	1.86
359333--359369	14	2.6	14	86	0	56	48	21	0	29	1.50
360717--360828	42	2.7	42	76	8	113	23	18	37	20	1.94
361308--361355	21	2.3	21	89	3	71	41	25	14	18	1.88
361396--361464	20	3.5	20	91	0	102	36	23	20	20	1.95
361507--361652	20	7.6	20	85	9	196	19	19	21	39	1.92
363552--363620	20	3.5	20	88	2	104	49	23	15	11	1.77
363957--364018	18	3.0	22	72	18	69	19	16	38	25	1.92
364193--364284	20	4.6	20	78	2	112	21	19	19	39	1.93
364281--364326	21	2.2	21	84	0	56	39	17	28	15	1.90
368491--368542	15	3.5	15	75	0	59	42	0	0	57	0.98
368478--368567	30	3.0	30	79	9	78	43	1	2	53	1.20
369544--369684	31	4.5	31	85	0	174	45	6	4	43	1.51
381431--381466	14	2.6	14	86	0	54	77	0	8	13	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
381533--381579	25	1.9	25	95	4	87	74	0	12	12	1.07
382995--383373	86	4.4	86	88	0	553	20	20	25	33	1.97
389481--389599	61	2.0	59	80	12	136	67	1	6	24	1.24
389578--389645	17	3.9	17	73	5	55	76	2	4	16	1.07
389693--389745	21	2.5	20	82	17	63	69	1	3	24	1.15
389770--389812	18	2.4	18	92	0	68	72	0	6	20	1.08
390424--390470	2	25.0	2	87	12	73	51	0	0	48	1.00
391345--391382	16	2.3	17	86	4	51	39	0	0	60	0.97
391763--391814	17	2.9	17	74	17	52	50	0	1	48	1.12
391788--391826	17	2.2	18	86	4	53	58	0	2	38	1.12
392440--392499	24	2.5	22	76	15	57	38	0	1	60	1.07
392442--392541	21	4.5	23	67	21	70	45	0	1	54	1.06
392485--392581	42	2.3	41	84	10	126	54	1	1	43	1.14
392515--392596	15	5.7	15	69	16	66	54	1	1	42	1.15
392643--392780	73	1.9	73	89	3	215	44	10	19	25	1.82
393959--394010	23	2.3	22	90	6	77	23	9	15	51	1.72
393957--394003	23	2.0	23	95	0	85	27	8	19	44	1.79
397499--397554	15	3.7	15	75	15	53	41	37	5	16	1.71
403247--403272	3	8.7	3	100	0	52	69	0	0	30	0.89
403720--403772	21	2.5	21	75	6	54	33	13	13	39	1.83
403749--403814	21	3.1	21	80	2	60	31	13	18	36	1.90
406163--406228	2	33.0	2	100	0	132	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
406389--406421	3	11.3	3	93	6	59	30	0	0	69	0.88
406952--406976	3	8.3	3	100	0	50	32	0	0	68	0.90
407089--407122	14	2.3	15	90	5	52	29	2	0	67	1.05
409061--409102	15	2.6	16	82	14	50	64	7	26	2	1.32
413353--413406	21	2.6	21	96	0	99	25	27	12	33	1.93
418859--418910	13	4.0	12	78	9	50	26	19	15	38	1.91
423768--423808	21	2.0	21	85	0	55	19	26	14	39	1.90
423805--423911	20	5.3	20	80	8	128	37	20	20	21	1.95
424772--424849	24	3.2	24	87	0	111	20	20	17	41	1.91
427262--427335	20	3.7	20	87	0	103	36	24	20	18	1.95
427327--427375	14	3.5	14	86	5	64	38	20	30	10	1.86
427368--427455	19	4.8	19	76	17	96	46	18	22	12	1.82
427465--427540	33	2.3	34	90	2	127	11	25	19	43	1.85
427465--427549	33	2.5	33	88	1	125	12	24	18	43	1.86
427662--427698	14	2.6	14	86	0	56	48	21	0	29	1.50
429634--429682	20	2.5	20	89	0	80	40	24	18	16	1.90
429710--429741	2	16.0	2	100	0	64	50	0	0	50	1.00
431408--431553	29	4.9	28	73	19	109	73	3	6	16	1.16
431411--431553	9	15.0	9	69	14	65	74	3	5	16	1.15
431413--431536	5	23.6	5	69	21	67	74	3	6	16	1.16
431505--431581	9	8.7	9	72	17	54	77	5	2	14	1.04
431541--431608	15	4.5	15	73	10	59	76	2	8	11	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
431427--431655	50	4.8	46	72	15	153	73	3	7	14	1.19
431707--431773	36	1.9	34	82	11	82	73	2	2	20	1.10
431695--431773	5	15.0	5	71	19	54	72	3	3	20	1.16
432606--432653	2	24.0	2	100	0	96	50	0	0	50	1.00
435536--435575	20	2.0	20	90	9	64	42	25	10	22	1.84
439775--439842	35	1.9	35	83	16	88	16	5	1	76	1.05
440036--440080	19	2.2	20	84	7	56	24	6	2	66	1.27
440087--440126	21	1.9	21	90	10	64	15	12	0	72	1.12
440186--440234	12	4.3	11	80	14	55	8	18	0	73	1.07
440219--440264	24	2.0	24	86	4	67	17	8	0	73	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20