genome.fa.s8228.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008228.1 Hibiscus syriacus cultivar Beakdansim tig00110864_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3739947

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  4  of  20  ( 2363 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
634663--635020	172	2.1	172	90	2	558	36	18	5	39	1.73
635516--635578	22	2.9	22	87	0	99	15	34	20	28	1.94
636403--636474	27	2.6	28	77	16	71	22	5	9	62	1.46
637951--637992	14	3.0	14	89	6	50	16	9	11	61	1.55
637939--638003	24	2.7	24	85	0	94	13	10	15	60	1.60
638243--638279	14	2.6	14	100	0	74	0	0	21	78	0.75
638256--638357	23	4.4	24	78	9	104	7	7	19	64	1.44
638277--638359	10	7.1	12	72	23	70	10	9	18	61	1.55
638267--638359	23	4.0	23	81	9	118	9	8	19	62	1.51
655390--655433	23	1.9	23	86	9	63	61	9	4	25	1.45
664182--664228	14	3.3	14	82	14	60	38	4	2	55	1.31
664404--664436	16	2.1	16	88	5	50	48	0	0	51	1.00
664521--664552	17	1.9	16	93	6	55	43	0	0	56	0.99
672132--672164	15	2.2	15	94	0	57	18	27	18	36	1.94
679791--679826	16	2.2	16	100	0	72	25	11	13	50	1.75
681054--681421	82	4.4	82	86	3	452	35	15	14	35	1.88
687183--687207	12	2.1	12	100	0	50	48	0	36	16	1.46
688307--688354	20	2.4	20	100	0	96	25	27	27	20	1.99
689687--689734	18	2.7	18	93	0	87	27	45	12	14	1.81
690275--690330	20	2.8	20	83	2	69	37	23	23	16	1.93
690314--690400	33	2.6	33	94	0	147	49	20	16	13	1.79
690314--690410	19	5.6	19	65	22	70	47	20	17	14	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
690417--690497	33	2.4	33	81	2	99	12	19	23	44	1.85
690469--690516	20	2.4	20	92	0	78	14	25	27	33	1.94
690487--690542	20	2.8	20	88	0	76	23	16	28	32	1.96
692378--692416	14	2.8	14	84	0	51	35	0	17	46	1.49
694934--694958	12	2.1	12	100	0	50	0	28	0	72	0.86
695145--695191	24	2.0	24	91	0	76	34	17	19	29	1.94
695149--695200	24	2.2	24	82	0	59	36	19	17	26	1.94
695933--696077	20	7.2	20	95	0	227	26	19	28	24	1.98
695935--696142	20	10.4	20	86	3	175	25	18	27	28	1.98
695928--696141	40	5.3	40	83	3	232	25	18	27	28	1.98
695969--696162	61	3.2	60	81	2	210	24	19	26	29	1.98
696172--696224	21	2.5	22	78	6	65	33	16	26	22	1.96
696515--696554	20	2.0	20	85	9	55	57	2	12	27	1.48
696515--696553	21	1.9	20	84	5	51	58	2	12	25	1.47
702410--703041	183	3.5	183	87	2	858	44	13	15	27	1.83
708363--709112	39	19.3	39	91	0	1108	35	17	18	29	1.94
715270--715309	20	2.1	19	90	4	62	40	32	2	25	1.69
716602--717426	200	4.1	200	91	0	1312	38	15	15	31	1.88
716607--717423	399	2.0	400	92	1	1343	38	15	15	31	1.88
718771--718808	17	2.3	16	95	4	67	47	5	2	44	1.39
718934--718958	9	2.8	9	100	0	50	32	8	12	48	1.69
719629--719666	2	19.0	2	100	0	76	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
720136--720546	164	2.6	157	84	5	518	33	12	13	40	1.83
722901--722940	21	1.9	21	85	10	55	27	17	0	55	1.43
723231--723260	12	2.4	13	88	11	53	6	36	0	56	1.26
724330--724402	18	3.8	18	83	13	101	17	19	31	31	1.95
724985--725027	22	2.0	22	95	0	77	23	18	34	23	1.96
725600--725652	18	2.9	18	91	0	88	28	32	18	20	1.97
728749--728914	29	5.9	29	83	7	191	36	6	21	35	1.80
728749--728914	55	2.9	57	85	9	200	36	6	21	35	1.80
736208--736291	19	4.4	19	92	0	114	16	29	33	20	1.95
736289--736332	13	3.8	12	85	11	56	18	45	22	13	1.84
736357--736487	29	4.5	29	80	9	142	41	5	20	32	1.75
736360--736477	58	2.1	58	90	1	184	43	5	18	33	1.72
738225--738264	20	2.0	20	85	4	55	55	0	2	42	1.13
738289--738313	12	2.1	12	100	0	50	40	0	0	60	0.97
740137--740173	14	2.6	14	86	0	56	56	16	21	5	1.59
745979--746099	63	1.9	63	85	6	165	35	16	22	25	1.95
747106--747146	8	4.9	8	87	6	55	26	0	24	48	1.51
747182--747227	24	1.9	24	86	8	67	39	2	15	43	1.59
747186--747237	24	2.1	25	82	3	61	44	3	13	38	1.62
754586--754678	46	2.0	46	91	0	150	24	19	10	45	1.82
754965--755459	54	9.2	54	85	4	554	30	18	19	31	1.95
758828--758889	18	3.2	19	73	22	58	30	3	0	66	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
773691--773736	22	2.1	22	87	0	65	43	4	4	47	1.42
773912--774039	61	2.1	61	88	0	193	25	17	29	27	1.97
774220--774322	39	2.6	39	81	6	109	43	3	7	44	1.51
774308--774344	2	18.5	2	100	0	74	51	0	0	48	1.00
774332--774511	35	5.1	34	78	12	175	42	1	11	45	1.48
774186--774454	129	2.0	134	80	11	308	43	1	8	45	1.45
774517--774579	17	3.8	17	74	14	51	25	3	3	68	1.19
775721--775751	10	3.2	10	90	9	55	19	9	0	70	1.14
775706--775770	25	2.6	26	75	22	68	21	6	0	72	1.06
779306--779346	3	13.7	3	94	0	73	68	29	0	2	1.03
785345--785379	3	11.7	3	88	11	54	34	0	0	65	0.93
786768--786984	119	1.8	117	79	6	249	39	8	8	43	1.66
790822--790853	15	2.1	15	94	0	55	28	18	6	46	1.73
798169--798299	1	131.0	1	70	0	91	85	2	12	0	0.69
798166--798299	17	7.9	16	80	11	135	85	2	12	0	0.70
798166--798292	8	15.0	8	80	14	114	85	2	12	0	0.70
798166--798300	7	20.4	7	76	15	105	84	2	13	0	0.72
798169--798299	25	5.2	25	78	10	124	85	2	12	0	0.69
799698--799879	91	2.0	90	89	3	276	30	17	20	30	1.96
800576--801255	115	5.9	113	87	6	795	37	14	19	28	1.91
801044--801343	124	2.5	122	84	5	376	41	17	19	22	1.90
801478--801512	3	11.7	3	88	11	54	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
801512--801538	14	1.9	14	100	0	54	70	0	0	29	0.88
804107--804138	16	2.0	16	100	0	64	25	25	18	31	1.98
804428--804478	23	2.3	23	77	19	54	62	5	9	21	1.47
804538--804583	22	2.1	22	87	0	65	69	2	10	17	1.27
804772--804960	106	1.8	105	85	5	267	62	4	11	20	1.46
805930--805973	3	14.3	3	86	13	63	65	0	0	34	0.93
805930--805996	25	2.8	25	77	13	77	62	2	0	34	1.10
805962--806010	21	2.2	23	89	7	75	57	6	0	36	1.24
808991--809059	18	3.7	18	78	12	77	30	27	20	21	1.98
811420--811453	2	17.0	2	100	0	68	50	0	0	50	1.00
817097--817330	129	1.8	130	80	8	289	26	17	24	31	1.97
817121--817330	65	3.2	64	80	7	228	26	18	24	31	1.97
817852--817896	2	22.0	2	95	4	81	48	2	0	48	1.13
821758--821800	4	10.5	4	95	5	77	48	25	0	25	1.51
822166--822238	18	3.9	18	84	7	101	27	32	21	17	1.96
822165--822241	38	2.0	38	92	0	127	27	31	22	19	1.98
823190--823243	2	27.0	2	88	0	81	46	1	1	50	1.23
834517--834562	22	2.1	22	83	0	56	69	4	10	15	1.32
835911--835959	3	17.3	3	77	12	50	59	2	2	36	1.21
835911--835971	11	5.4	11	78	11	61	57	3	1	37	1.25
835929--835993	21	2.9	22	82	11	71	56	3	3	36	1.30
836794--836842	20	2.5	19	83	6	53	42	20	2	34	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
838576--838619	21	2.1	21	95	0	79	15	29	11	43	1.82
839579--839657	41	1.9	41	89	0	122	43	1	7	48	1.39
839599--839657	18	2.8	23	73	24	74	45	0	10	44	1.37
840100--840177	41	1.9	40	84	10	104	50	11	0	38	1.39
848206--848263	28	2.1	28	100	0	116	37	15	17	29	1.90
848215--848274	28	2.3	26	82	8	68	38	16	16	28	1.91
851448--851487	18	2.2	18	91	8	64	60	5	5	30	1.40
851667--851703	17	2.1	18	95	5	67	48	2	0	48	1.15
852126--852193	34	2.0	34	83	8	86	52	2	0	44	1.16
853243--853400	21	7.8	20	70	7	77	37	24	17	19	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20