genome.fa.s8228.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008228.1 Hibiscus syriacus cultivar Beakdansim tig00110864_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3739947

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  6  of  20  ( 2363 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
975525--976867	199	6.8	199	82	8	1549	38	14	16	30	1.89
975525--976867	399	3.4	399	88	3	1939	38	14	16	30	1.89
976351--976867	177	2.8	178	85	7	631	38	15	16	30	1.89
977531--977560	2	15.0	2	100	0	60	50	0	0	50	1.00
979812--979866	24	2.3	25	81	9	69	32	5	14	47	1.67
979831--979867	18	2.1	18	89	0	56	32	5	10	51	1.60
979823--979875	24	2.2	24	86	0	70	35	3	13	47	1.61
981117--982958	198	9.3	198	91	1	2671	37	14	17	30	1.89
984646--984694	19	2.6	19	86	0	62	32	6	8	53	1.55
987172--987839	200	3.4	199	89	2	954	37	15	16	30	1.89
987951--987995	23	2.0	23	86	0	63	40	15	8	35	1.79
987867--988029	87	1.9	87	93	0	281	33	11	11	42	1.78
988250--988285	14	2.6	14	90	0	54	38	2	2	55	1.29
988716--988758	18	2.4	18	92	0	77	44	30	9	16	1.79
997954--997996	2	21.5	2	100	0	86	51	0	0	48	1.00
998729--998838	44	2.5	44	81	8	134	37	14	18	30	1.90
1002453--1002500	19	2.6	19	93	3	80	14	27	35	22	1.93
1002453--1002512	19	3.2	19	88	4	68	15	28	33	23	1.94
1002476--1002557	23	3.8	22	80	6	87	19	24	32	23	1.97
1003040--1003068	14	2.1	14	100	0	58	20	20	17	41	1.90
1008308--1008358	19	2.7	19	100	0	102	15	21	47	15	1.83
1013725--1013846	52	2.3	54	83	9	144	46	24	8	20	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1014480--1014536	27	2.1	27	100	0	114	42	21	7	29	1.79
1014576--1014657	29	2.8	29	84	0	101	18	40	29	12	1.87
1014877--1014960	29	2.9	29	83	0	96	13	29	39	17	1.88
1015260--1015324	30	2.2	31	83	5	80	40	4	7	47	1.53
1019741--1019779	20	2.0	20	89	0	60	33	23	10	33	1.88
1021808--1021876	23	3.0	23	85	4	95	27	26	26	20	1.99
1022086--1022154	30	2.3	30	89	0	102	33	21	5	39	1.77
1022202--1022259	25	2.3	25	79	8	64	39	8	13	37	1.76
1024001--1025270	635	2.0	635	98	0	2450	30	22	16	30	1.96
1029387--1029478	23	4.0	23	84	5	114	25	26	28	20	1.99
1029690--1029758	30	2.3	30	92	0	111	33	23	4	39	1.74
1031669--1031702	16	2.1	16	88	0	50	44	8	35	11	1.72
1037084--1037177	36	2.6	36	86	0	125	28	13	13	43	1.83
1037436--1037703	40	6.3	40	67	16	128	26	34	16	22	1.95
1037473--1037679	43	4.8	43	71	13	140	26	32	17	22	1.97
1037571--1037725	83	1.9	83	91	0	256	24	34	17	23	1.96
1037919--1037959	3	13.7	3	89	0	64	2	0	26	70	0.99
1037913--1037959	12	3.9	12	91	0	67	6	0	23	70	1.10
1038357--1038691	167	2.0	167	92	1	555	51	11	22	14	1.74
1039515--1039583	3	23.0	3	79	5	68	42	0	0	57	0.98
1039503--1039576	24	3.1	24	86	5	89	44	0	0	55	0.99
1041422--1041463	21	2.0	22	85	4	59	54	0	2	42	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1041363--1041563	107	1.9	106	82	5	253	40	9	10	39	1.72
1041563--1041604	11	3.3	13	80	12	52	50	2	0	47	1.14
1046550--1046728	76	2.4	75	84	7	224	28	18	17	35	1.94
1050982--1051038	22	2.6	22	88	5	80	38	12	14	35	1.83
1050979--1051058	22	3.6	22	75	18	76	35	13	12	38	1.83
1051721--1051856	45	3.0	45	89	5	202	22	25	21	30	1.98
1051870--1051977	45	2.4	45	88	3	153	23	25	22	29	1.99
1051742--1052460	121	6.0	121	96	0	1271	23	23	21	32	1.98
1051991--1052098	45	2.4	45	88	3	153	24	25	21	28	1.99
1052112--1052219	45	2.4	45	85	3	153	24	25	20	30	1.98
1052233--1052340	45	2.4	45	87	3	153	22	25	23	28	1.99
1052348--1052495	45	3.3	45	90	1	242	22	22	19	35	1.96
1052633--1052694	3	20.7	3	73	6	54	43	0	0	56	0.99
1052629--1052701	12	5.8	12	76	20	69	45	0	0	54	0.99
1052617--1052697	27	3.2	26	80	14	82	45	0	0	54	0.99
1052623--1052682	18	3.2	18	75	13	57	46	0	0	53	1.00
1054511--1054550	11	3.3	13	80	13	50	50	2	0	47	1.14
1056889--1056970	15	5.5	15	88	2	121	37	7	19	35	1.80
1056889--1056970	30	2.8	30	94	1	139	37	7	19	35	1.80
1056885--1056970	45	1.9	44	92	2	145	40	6	18	33	1.78
1056953--1057022	20	3.5	20	96	0	131	40	10	14	35	1.79
1057186--1057272	29	3.3	25	75	21	79	52	2	1	43	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1057186--1057259	29	2.7	27	80	17	82	55	1	1	41	1.17
1057201--1057279	29	2.7	29	81	13	83	53	2	0	44	1.14
1057269--1057339	23	3.0	23	78	15	74	46	0	1	52	1.09
1057296--1057349	22	2.5	22	79	11	58	53	0	0	46	1.00
1057308--1057367	27	2.2	28	79	11	70	50	0	0	50	1.00
1057541--1057655	42	2.7	42	97	0	212	44	20	18	17	1.87
1061745--1061786	19	2.2	19	100	0	84	9	21	23	45	1.81
1064232--1064286	23	2.4	23	84	9	76	80	0	9	10	0.92
1064215--1064286	19	3.9	17	75	13	63	77	1	8	12	1.04
1064641--1064688	25	1.9	25	82	0	60	12	27	39	20	1.89
1082040--1082084	23	2.0	23	81	0	54	26	24	26	22	2.00
1082052--1082367	150	2.1	149	94	1	544	34	21	17	26	1.95
1088996--1089040	23	2.0	23	86	0	63	26	26	26	20	1.99
1089008--1089323	150	2.1	149	94	1	553	34	21	17	26	1.95
1093490--1093516	14	1.9	14	100	0	54	48	0	22	29	1.51
1095668--1095745	20	3.9	20	89	0	120	28	25	21	24	1.99
1096327--1096414	20	4.4	20	85	1	88	14	15	23	45	1.84
1096378--1096421	20	2.2	20	91	0	70	11	13	20	54	1.69
1097961--1098010	18	2.8	18	100	0	100	32	20	6	42	1.76
1098161--1098205	20	2.2	20	92	0	72	35	26	20	17	1.95
1098249--1098289	20	2.2	19	86	8	57	19	17	26	36	1.94
1098783--1098887	21	5.0	21	73	3	77	21	36	19	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1098780--1098881	42	2.4	42	77	3	116	21	35	20	22	1.96
1100287--1100348	14	4.3	14	77	6	61	38	0	14	46	1.45
1100447--1100500	20	2.7	20	82	5	65	42	27	20	9	1.82
1100550--1100861	20	16.5	20	79	11	327	25	17	22	33	1.96
1100494--1100741	114	2.2	114	89	2	374	26	19	20	33	1.97
1100584--1100861	74	3.8	74	79	2	335	24	17	23	34	1.96
1100561--1100799	94	2.5	94	89	1	372	23	19	23	33	1.97
1100582--1100853	54	4.9	54	81	9	261	23	18	24	34	1.96
1100832--1101101	140	1.9	140	96	0	504	42	15	13	28	1.85
1101161--1101195	18	1.9	18	94	0	61	17	2	25	54	1.57
1104329--1104455	20	6.4	20	82	1	130	25	20	24	29	1.99
1104327--1104440	59	1.9	60	83	1	149	26	19	25	28	1.98
1104338--1104455	59	2.0	59	81	0	137	26	20	23	29	1.99
1104439--1104514	20	3.8	20	89	0	116	26	19	17	36	1.94
1104390--1104514	40	3.2	39	82	5	126	26	19	19	35	1.95
1104511--1104551	21	2.0	21	95	0	73	39	19	24	17	1.92
1109828--1109918	29	3.3	29	66	12	73	41	3	20	34	1.69
1109823--1109927	54	2.0	53	88	5	158	40	4	19	35	1.72
1111297--1111530	107	2.1	107	81	5	261	41	10	12	35	1.77
1111366--1111460	48	2.0	48	80	0	109	42	11	12	33	1.79
1117089--1117172	29	2.9	29	82	3	80	26	35	25	13	1.92
1117126--1117208	29	2.9	29	87	0	121	21	39	21	16	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1117361--1117418	11	5.1	11	76	15	64	22	22	17	37	1.93
1117358--1117418	23	2.7	23	94	0	104	21	22	18	37	1.94
1117810--1117874	27	2.3	29	76	10	73	35	1	15	47	1.55
1118044--1118083	21	1.9	21	100	0	80	27	0	15	57	1.38
1118298--1118356	30	2.0	30	90	6	93	40	5	11	42	1.64
1118332--1118380	22	2.2	22	96	0	89	44	2	14	38	1.56
1120896--1121193	14	22.3	14	71	17	179	43	8	2	44	1.47
1120970--1121015	9	5.2	9	84	5	67	36	8	0	54	1.32
1120979--1121011	17	1.9	17	93	0	57	39	9	0	51	1.34
1120973--1121040	3	23.3	3	74	5	50	39	5	1	52	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20