genome.fa.s8228.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008228.1 Hibiscus syriacus cultivar Beakdansim tig00110864_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3739947

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  20  of  20  ( 2363 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3571366--3571447	37	2.2	39	83	16	113	58	8	7	25	1.53
3575291--3575324	17	1.9	18	88	5	52	64	5	0	29	1.17
3576464--3576522	31	1.9	31	93	6	102	33	15	8	42	1.77
3580703--3580741	17	2.3	17	86	8	53	38	0	2	58	1.12
3590718--3590752	12	2.8	13	86	8	54	51	0	0	48	1.00
3591127--3591165	21	1.9	21	89	5	62	56	0	2	41	1.13
3591788--3591905	26	4.5	26	72	17	82	42	2	0	54	1.20
3591788--3591875	23	3.4	26	79	19	87	44	2	0	53	1.13
3592034--3592102	31	2.2	31	92	0	111	52	8	7	31	1.60
3592499--3592525	7	3.9	7	100	0	54	55	0	0	44	0.99
3595418--3595453	17	2.1	18	89	5	56	61	5	2	30	1.33
3598640--3598670	6	5.2	6	100	0	62	83	0	0	16	0.64
3604531--3604573	15	2.9	15	85	0	68	32	23	4	39	1.75
3605147--3605185	15	2.5	15	87	4	51	28	5	0	66	1.12
3610164--3610209	21	2.2	21	84	0	56	30	17	26	26	1.97
3611276--3611338	22	2.8	22	92	2	99	28	25	17	28	1.97
3613029--3613085	22	2.5	21	78	13	60	28	12	15	43	1.83
3615174--3615230	22	2.7	22	81	8	73	17	10	24	47	1.79
3617579--3617945	138	2.7	138	80	10	360	26	11	15	45	1.81
3618884--3618961	31	2.5	31	85	4	104	25	26	12	34	1.92
3620895--3620957	31	2.0	32	96	3	119	39	15	22	22	1.92
3621681--3621847	57	2.9	57	87	1	246	27	27	22	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3624527--3624559	16	2.0	17	94	5	59	12	21	0	66	1.23
3625391--3625441	21	2.4	21	86	0	66	33	19	15	31	1.93
3628574--3628611	15	2.6	15	95	4	69	23	23	7	44	1.79
3629406--3629474	23	3.0	23	80	0	75	28	24	24	21	1.99
3629490--3629703	103	2.1	103	92	0	356	36	21	13	27	1.91
3634643--3634686	23	1.9	23	95	0	79	27	27	27	18	1.98
3634711--3634928	103	2.1	103	94	0	382	37	22	13	26	1.91
3636289--3636331	21	2.0	21	90	0	68	18	25	25	30	1.98
3638523--3638570	25	1.9	25	91	8	80	31	8	16	43	1.78
3638657--3638755	21	4.7	21	75	14	96	23	34	19	23	1.97
3638776--3638869	20	4.7	20	89	2	125	20	25	23	30	1.98
3638776--3638877	41	2.5	41	85	4	127	20	25	24	29	1.99
3638982--3639021	20	1.9	22	90	10	66	37	40	10	12	1.77
3642094--3642153	30	2.0	30	87	6	86	36	6	13	43	1.70
3642235--3642331	21	4.7	20	75	11	88	22	35	18	23	1.96
3642233--3642331	42	2.4	40	81	10	110	23	34	19	23	1.97
3656224--3656248	3	8.3	3	100	0	50	0	68	0	32	0.90
3658122--3658225	45	2.3	46	85	5	140	28	20	22	28	1.98
3666080--3666105	2	13.0	2	100	0	52	50	0	0	50	1.00
3666722--3666907	65	2.9	64	80	8	209	31	21	19	27	1.97
3666853--3666901	19	2.6	19	84	9	57	24	30	18	26	1.98
3668424--3668577	76	2.0	78	84	5	206	40	7	15	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3673297--3673359	30	2.1	30	82	8	76	36	4	20	38	1.74
3675075--3675135	17	3.4	17	70	16	59	19	24	27	27	1.99
3675046--3675141	38	2.5	38	93	0	156	26	21	27	25	2.00
3675215--3675256	12	3.5	12	86	0	57	38	14	16	30	1.89
3678664--3678740	30	2.6	30	79	8	77	38	6	20	33	1.79
3681459--3681523	21	3.3	21	64	16	57	26	23	26	24	2.00
3681475--3681535	17	3.4	17	66	16	50	21	24	26	27	1.99
3681446--3681535	38	2.4	38	90	0	135	26	21	25	26	1.99
3683900--3684050	64	2.4	64	86	4	216	36	19	18	25	1.94
3684014--3684072	30	2.0	30	96	0	109	32	27	16	23	1.96
3684438--3684553	45	2.6	45	88	2	162	35	21	6	37	1.78
3684588--3685074	118	4.1	118	90	4	693	30	23	10	35	1.89
3684629--3685074	59	7.6	58	76	9	424	30	23	10	35	1.89
3691935--3692015	39	2.1	39	100	0	162	29	12	14	43	1.82
3691974--3692364	101	3.9	100	80	3	408	32	11	15	39	1.84
3692082--3692404	101	3.2	98	78	5	315	33	12	15	39	1.84
3696244--3696345	22	4.7	21	69	18	68	49	2	1	46	1.28
3696372--3696405	14	2.4	15	85	14	54	38	8	0	52	1.33
3697640--3697669	7	4.3	7	95	0	51	46	30	0	23	1.52
3697635--3697669	14	2.6	14	86	4	54	42	34	0	22	1.54
3697764--3697808	22	2.0	23	86	4	65	48	0	11	40	1.39
3700549--3700574	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3703655--3703727	22	3.3	22	90	0	119	16	41	24	17	1.90
3717891--3717947	30	1.9	30	100	0	114	52	3	15	28	1.59
3720362--3720392	15	2.1	15	93	0	53	32	32	6	29	1.83
3722904--3722948	3	16.0	3	82	13	51	26	0	0	73	0.84
3722904--3722949	17	2.9	17	87	12	64	26	0	0	73	0.83
3722908--3722949	5	8.0	5	87	12	50	23	0	0	76	0.79
3722904--3722948	8	5.4	8	82	10	54	26	0	0	73	0.84
3729809--3729946	36	3.8	36	82	4	152	34	20	13	31	1.91
3729906--3729937	16	2.0	17	88	11	50	34	25	9	31	1.87
3730296--3730361	32	2.0	33	82	8	82	34	12	12	40	1.80
3731132--3731161	3	10.0	3	100	0	60	33	0	0	66	0.92
3732998--3733042	5	9.0	5	90	4	65	15	2	2	80	0.92
3737632--3737684	4	13.8	4	88	7	83	49	24	0	26	1.51
3738006--3738170	36	4.5	36	80	6	161	33	18	11	36	1.87
3738294--3738507	62	3.3	66	78	9	226	26	15	14	42	1.86
3738650--3739134	131	3.7	129	74	9	365	26	31	16	25	1.97
3739322--3739368	3	16.0	3	86	4	69	31	0	4	63	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20

The End!