genome.fa.s8242.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008242.1 Hibiscus syriacus cultivar Beakdansim tig00110890_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16962412

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   

This is table  58  of  73  ( 8740 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13535766--13535826	27	2.4	25	78	10	77	44	1	4	49	1.33
13535777--13535831	27	2.0	27	92	0	92	41	3	5	49	1.43
13535791--13536052	38	7.1	37	79	14	233	44	4	5	45	1.48
13535791--13536047	39	6.9	37	79	11	233	45	4	5	44	1.48
13535861--13536077	77	3.1	68	81	11	181	48	4	5	42	1.44
13535957--13536099	33	4.3	32	72	13	94	46	3	5	44	1.44
13536112--13536156	3	15.3	3	78	21	51	28	2	0	68	1.01
13536108--13536163	13	4.2	13	77	18	53	25	3	0	71	1.02
13543106--13543218	37	3.1	37	88	0	154	41	15	14	28	1.86
13543762--13543894	45	2.9	46	80	16	161	31	3	1	63	1.21
13543820--13543962	35	4.1	35	76	17	113	24	5	0	69	1.15
13543822--13543962	34	4.1	33	74	16	108	24	5	0	69	1.15
13546366--13546459	27	3.2	27	65	32	68	35	8	11	44	1.71
13546344--13546468	61	2.0	61	98	0	241	34	7	11	47	1.67
13547136--13547177	12	3.2	13	83	6	50	76	4	16	2	1.07
13548257--13548333	32	2.4	32	82	4	102	28	15	23	32	1.95
13548257--13548344	32	2.8	32	80	0	95	28	15	25	30	1.96
13548578--13548864	110	2.6	110	89	1	450	36	21	15	26	1.94
13549824--13550005	37	4.9	37	93	0	283	41	17	13	28	1.87
13550485--13550556	26	2.8	26	81	8	76	25	5	2	66	1.27
13550550--13550707	46	3.4	44	78	16	131	32	2	1	63	1.19
13550603--13550681	37	2.3	34	84	8	97	29	2	1	67	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13550652--13550751	22	4.4	22	77	16	89	24	5	0	71	1.06
13550664--13550737	21	3.6	20	79	15	71	24	2	0	72	0.97
13550688--13550815	21	5.7	22	70	10	73	21	7	0	69	1.19
13552111--13552188	15	5.2	15	95	0	138	6	16	67	8	1.38
13553886--13553957	2	36.5	2	97	2	137	48	0	0	51	1.00
13555573--13555653	18	4.6	17	83	4	99	35	4	30	28	1.78
13555573--13555656	17	4.8	17	83	4	105	34	5	30	28	1.81
13555573--13555653	35	2.3	35	97	0	153	35	4	30	28	1.78
13556249--13556303	22	2.6	21	83	13	69	76	0	10	12	1.02
13556235--13556282	15	3.2	15	82	8	53	75	2	8	14	1.13
13556230--13556397	19	8.7	19	70	12	76	74	3	7	14	1.17
13556286--13556365	25	3.3	22	78	16	70	73	6	5	15	1.20
13556230--13556571	9	35.9	9	68	18	69	71	4	7	17	1.24
13556489--13556615	5	24.8	5	71	19	59	77	1	7	13	1.06
13556540--13556610	23	3.2	22	86	9	92	83	0	9	7	0.82
13556553--13556604	18	3.0	18	83	8	72	82	0	11	5	0.82
13556540--13556610	11	6.5	11	77	16	76	83	0	9	7	0.82
13556536--13556632	44	2.2	44	76	8	101	78	0	9	12	0.97
13556975--13557022	15	3.1	15	75	3	51	27	0	10	62	1.27
13556977--13557047	31	2.3	31	82	4	90	26	0	11	61	1.29
13557645--13557750	31	3.4	31	89	0	167	17	0	26	54	1.49
13562891--13562969	3	26.0	3	88	2	113	62	1	0	36	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13563435--13563478	3	14.7	3	95	0	79	0	29	0	70	0.88
13569563--13569598	2	18.0	2	100	0	72	50	0	0	50	1.00
13569801--13569852	21	2.5	21	81	3	61	38	19	25	17	1.93
13569841--13569894	20	2.7	20	94	5	92	31	22	18	27	1.97
13569838--13569955	61	1.9	62	84	5	159	37	22	16	23	1.94
13569861--13569955	41	2.3	41	85	0	136	36	23	16	23	1.94
13570123--13570166	22	2.0	22	91	8	72	22	45	13	18	1.84
13570123--13570174	22	2.5	21	84	12	63	23	44	11	21	1.84
13570410--13570453	20	2.2	20	87	0	61	11	18	20	50	1.77
13571692--13571736	18	2.5	18	85	0	63	26	42	15	15	1.87
13572218--13572263	20	2.3	20	84	0	56	36	23	21	17	1.94
13572229--13572273	20	2.3	20	88	3	74	37	17	24	20	1.93
13572237--13572352	19	6.6	19	71	21	92	43	21	21	13	1.87
13572273--13572330	14	3.9	14	79	16	71	48	24	17	10	1.78
13572257--13572347	32	2.8	33	94	3	166	47	21	18	12	1.81
13572364--13572435	14	4.9	14	83	12	99	9	16	25	48	1.76
13572359--13572420	32	1.9	32	96	0	115	9	17	24	48	1.77
13572436--13572491	20	2.8	20	86	7	71	16	23	23	37	1.93
13574431--13574469	20	2.0	20	94	0	69	46	30	10	12	1.75
13574475--13574519	19	2.4	19	100	0	90	46	17	20	15	1.84
13574550--13574639	20	4.6	20	98	1	173	15	24	26	33	1.95
13574725--13574814	20	4.6	20	98	1	173	15	24	26	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13574496--13574846	175	2.0	176	99	0	695	24	19	22	33	1.97
13575027--13575077	20	2.5	20	100	0	102	19	31	19	29	1.97
13575822--13575875	24	2.2	24	86	0	72	24	16	20	38	1.92
13576050--13576074	12	2.1	12	100	0	50	72	0	28	0	0.86
13578184--13578240	19	2.9	20	76	5	62	36	22	21	19	1.95
13578238--13578327	33	2.7	33	89	0	135	13	22	21	43	1.87
13578269--13578327	19	3.4	18	71	22	54	10	23	20	45	1.81
13578436--13578470	14	2.5	14	90	0	61	45	22	0	31	1.53
13579824--13579890	21	3.2	21	68	4	55	19	20	35	23	1.95
13579824--13579946	42	2.9	41	79	7	113	22	18	36	21	1.95
13580164--13580348	91	2.0	90	90	6	291	46	18	12	22	1.82
13582044--13582176	19	7.4	19	70	18	79	42	21	24	12	1.87
13582061--13582159	33	3.0	33	90	1	153	39	22	26	12	1.89
13582131--13582181	19	2.7	19	93	0	84	45	19	21	13	1.85
13582177--13582221	19	2.4	19	84	0	63	6	15	26	51	1.68
13582768--13582820	20	2.7	20	93	0	88	26	20	28	24	1.99
13582829--13582882	20	2.7	20	91	0	81	29	18	20	31	1.96
13582953--13582993	21	2.0	21	85	0	55	34	31	17	17	1.93
13583304--13583331	7	4.0	7	100	0	56	71	0	28	0	0.86
13585558--13585640	17	4.8	17	71	14	53	62	0	0	37	0.95
13585559--13585642	25	3.4	24	77	18	84	63	0	0	36	0.95
13585556--13585642	23	3.6	23	77	18	79	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13587449--13587618	81	2.1	82	80	5	184	38	17	15	29	1.90
13587812--13587928	41	2.9	41	78	0	117	30	18	19	30	1.96
13588268--13588292	2	12.5	2	100	0	50	48	0	0	52	1.00
13588814--13588882	21	3.2	21	74	8	66	28	31	14	24	1.95
13588814--13588897	44	1.9	44	87	0	123	29	29	17	22	1.97
13597526--13597564	18	2.2	18	90	0	60	46	25	28	0	1.53
13604755--13604816	23	2.9	21	83	7	81	20	33	25	19	1.96
13604757--13604842	21	4.1	20	75	11	75	22	32	26	18	1.97
13609605--13609667	28	2.2	28	94	0	108	28	44	14	12	1.82
13619266--13619290	2	12.5	2	100	0	50	52	0	0	48	1.00
13621280--13621364	29	2.8	30	78	5	91	62	8	11	17	1.53
13622876--13622910	3	11.3	3	87	6	52	60	0	2	37	1.12
13623107--13623464	134	2.7	133	86	1	457	22	17	31	29	1.96
13623896--13624101	91	2.3	87	80	10	243	45	14	12	27	1.80
13623974--13624243	29	9.1	29	75	16	103	45	14	10	29	1.79
13623918--13624130	90	2.3	93	84	4	270	44	14	12	29	1.81
13624075--13624263	58	3.2	58	89	3	261	44	13	10	30	1.78
13624075--13624263	87	2.1	89	86	3	256	44	13	10	30	1.78
13624319--13624439	64	1.9	64	86	3	172	46	16	10	26	1.80
13624516--13624574	31	1.9	31	93	3	102	44	13	13	28	1.82
13624612--13624721	36	3.1	35	76	3	121	39	12	17	30	1.87
13624617--13624737	36	3.4	36	76	2	91	38	14	19	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13624717--13625033	108	3.0	105	76	11	344	42	10	14	31	1.80
13624994--13625063	36	1.9	37	85	2	97	42	10	18	28	1.82
13626635--13626682	11	4.1	11	80	15	51	4	14	2	79	0.98
13627253--13627291	20	2.0	20	89	0	60	38	15	15	30	1.88
13630359--13630400	21	2.0	21	85	4	57	64	7	7	21	1.43
13630361--13630454	30	3.1	30	83	4	100	60	7	13	18	1.56
13631890--13631921	3	10.3	3	93	6	55	62	0	0	37	0.95
13632108--13632152	23	2.0	23	83	12	58	80	6	4	8	1.03
13634429--13634527	39	2.6	39	78	12	107	53	7	12	27	1.63
13635437--13635486	20	2.6	19	83	3	64	32	20	14	34	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73