genome.fa.s8242.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008242.1 Hibiscus syriacus cultivar Beakdansim tig00110890_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16962412

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   

This is table  73  of  73  ( 8740 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16791890--16792283	102	3.8	102	92	2	637	41	12	19	26	1.88
16793628--16793853	95	2.5	88	82	11	266	32	21	18	28	1.96
16793682--16793867	95	2.0	94	91	3	302	32	19	18	30	1.95
16797779--16797892	13	8.8	12	68	25	56	71	0	6	21	1.12
16797803--16797850	19	2.4	19	82	6	60	75	0	0	25	0.81
16797852--16797898	18	2.6	18	75	0	58	70	2	8	19	1.24
16797777--16797884	4	27.2	4	73	17	68	71	0	6	22	1.09
16797986--16798026	15	2.5	17	80	15	59	82	2	0	14	0.76
16797993--16798048	5	11.2	5	80	17	55	76	1	0	21	0.87
16797993--16798069	25	3.1	25	81	10	79	75	1	2	20	1.00
16797987--16798041	16	3.5	15	85	9	65	78	1	0	20	0.85
16797991--16798072	15	5.6	14	73	15	60	75	1	2	20	0.98
16797987--16798160	57	3.1	56	77	19	155	69	0	5	24	1.13
16798098--16798132	14	2.4	14	85	4	52	77	0	5	17	0.96
16799423--16799467	21	2.1	21	83	0	54	33	28	22	15	1.95
16801152--16801360	101	2.1	101	91	3	341	27	14	22	35	1.93
16801386--16801439	23	2.3	23	90	0	81	20	27	24	27	1.99
16804439--16804479	21	2.0	21	85	0	55	29	29	24	17	1.97
16806131--16806343	103	2.1	103	93	0	363	28	13	22	36	1.91
16806360--16806427	23	3.0	23	86	0	91	22	27	25	25	1.99
16806456--16806489	17	2.1	17	88	5	52	32	23	5	38	1.79
16807610--16807651	17	2.5	17	84	3	59	50	0	4	45	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16809312--16809346	14	2.5	14	85	0	52	28	0	2	68	1.04
16809765--16809820	25	2.2	25	78	12	62	28	0	8	62	1.25
16814297--16814567	145	1.9	146	92	0	463	31	20	15	33	1.93
16814699--16814741	18	2.4	18	100	0	86	46	13	20	18	1.83
16815216--16815743	181	2.9	179	76	8	505	39	9	10	40	1.72
16816635--16816675	17	2.4	17	87	4	55	46	0	9	43	1.36
16818567--16818689	65	1.9	65	85	6	169	48	9	4	37	1.55
16818555--16818689	33	4.2	33	76	5	123	47	9	4	38	1.57
16838676--16838836	42	3.9	42	79	7	159	32	18	21	27	1.96
16840700--16840730	16	1.9	16	100	0	62	25	12	19	41	1.87
16843353--16843389	18	2.1	17	95	5	65	8	5	16	70	1.30
16849279--16849357	21	3.8	20	76	6	68	43	18	36	1	1.59
16849867--16849980	43	2.7	43	81	8	133	40	25	15	18	1.90
16853752--16853847	28	3.3	28	67	13	86	32	9	25	33	1.88
16853730--16854282	59	9.4	59	85	5	665	35	10	24	30	1.89
16853724--16854225	176	2.8	177	87	4	683	35	10	23	30	1.89
16854391--16854587	44	4.4	43	85	5	232	40	7	18	34	1.78
16859735--16860048	59	5.5	51	91	3	259	35	10	24	29	1.88
16859773--16860374	59	10.7	59	79	10	534	35	10	23	30	1.88
16859780--16859937	31	5.3	31	61	19	84	34	10	25	29	1.90
16860456--16860652	44	4.4	43	86	5	241	39	7	19	34	1.79
16864607--16864640	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16864707--16864824	57	2.1	57	100	0	236	39	15	12	32	1.85
16865630--16865673	20	2.3	19	84	4	52	31	2	4	61	1.28
16868985--16869118	20	6.9	20	68	19	70	39	21	11	27	1.87
16869387--16869425	16	2.5	15	84	8	51	28	5	0	66	1.12
16870017--16870050	12	2.8	12	90	0	50	55	29	0	14	1.40
16870176--16870229	24	2.2	24	93	0	90	24	18	16	40	1.90
16872409--16872440	14	2.3	14	94	0	55	53	31	9	6	1.58
16872430--16872488	20	3.0	20	85	2	75	45	18	10	25	1.81
16873603--16873647	22	2.0	22	95	0	81	20	15	48	15	1.80
16873773--16873939	40	4.2	40	68	10	108	35	13	20	30	1.91
16873816--16873866	20	2.5	20	90	0	75	33	15	21	29	1.94
16873773--16873927	80	1.9	80	80	5	179	37	12	19	30	1.89
16873924--16874028	21	4.9	21	89	5	133	25	16	19	39	1.91
16873924--16874046	42	2.9	42	84	12	146	26	14	21	38	1.92
16874018--16874068	20	2.5	20	84	6	68	23	5	31	39	1.79
16879650--16879709	23	2.7	22	82	5	75	20	23	26	30	1.98
16879642--16879717	22	3.3	22	78	7	80	19	25	23	31	1.98
16879730--16879779	23	2.2	23	85	0	73	28	24	22	26	1.99
16880702--16880744	20	2.1	21	86	4	61	62	0	4	32	1.15
16881860--16881899	21	1.9	21	89	0	62	37	0	15	47	1.45
16883353--16883402	5	10.0	5	86	0	73	22	36	38	4	1.73
16883353--16883402	20	2.5	20	90	0	82	22	36	38	4	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16883427--16883451	6	4.2	6	100	0	50	0	16	48	36	1.46
16889631--16889683	22	2.4	22	75	12	54	30	9	20	39	1.84
16894331--16894484	65	2.4	65	83	4	168	32	17	21	28	1.96
16896592--16896635	13	3.1	14	87	9	63	52	4	6	36	1.49
16897103--16897208	44	2.4	44	90	3	160	30	17	18	33	1.95
16897598--16897631	15	2.3	15	89	0	50	38	11	14	35	1.83
16900868--16900907	20	2.0	21	85	5	55	25	17	10	47	1.78
16902950--16903002	19	2.8	19	97	0	97	18	22	32	26	1.97
16906388--16906429	20	2.0	21	90	4	68	19	11	33	35	1.88
16914237--16914313	3	25.7	3	97	0	145	33	1	0	64	1.01
16914821--16914850	15	1.9	16	93	6	53	80	10	10	0	0.92
16915697--16915743	20	2.3	21	81	7	60	21	0	10	68	1.20
16916420--16916444	7	3.6	7	100	0	50	68	0	0	32	0.90
16926718--16926918	100	2.0	100	98	1	386	36	13	22	26	1.92
16927025--16927106	9	9.3	9	77	10	89	81	1	14	2	0.85
16927015--16927106	27	3.6	26	78	14	102	81	1	15	2	0.84
16927018--16927106	18	5.2	18	81	12	100	82	1	14	2	0.84
16927020--16927104	43	2.0	43	86	4	118	81	1	15	2	0.86
16928000--16928370	82	4.6	83	90	3	535	27	14	22	36	1.92
16928000--16928370	165	2.3	163	88	4	536	27	14	22	36	1.92
16929206--16929877	113	6.0	112	94	0	1103	38	13	18	29	1.90
16930197--16930267	3	23.7	3	94	0	124	35	1	0	63	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16931653--16931699	20	2.3	21	81	7	60	21	0	10	68	1.20
16937101--16937127	11	2.5	11	100	0	54	29	33	0	37	1.58
16937990--16938033	15	3.0	14	80	9	52	56	4	4	34	1.40
16940562--16940786	64	3.5	64	83	4	258	33	20	19	27	1.96
16941538--16941760	103	2.2	103	100	0	446	25	13	25	36	1.91
16947239--16947289	19	2.7	19	85	8	70	25	15	35	23	1.94
16947133--16947340	65	3.2	64	81	13	239	27	16	25	29	1.97
16953750--16953789	21	1.9	21	85	10	55	35	10	2	52	1.48
16955779--16955829	19	2.7	19	93	0	93	15	21	31	31	1.95
16955734--16955909	83	2.1	82	81	6	194	26	17	26	30	1.97
16957056--16957277	103	2.2	103	96	0	410	25	12	24	37	1.91
16957289--16957351	23	2.7	23	95	0	108	19	26	26	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73

The End!