genome.fa.s8242.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008242.1 Hibiscus syriacus cultivar Beakdansim tig00110890_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16962412

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   

This is table  64  of  73  ( 8740 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14729907--14729945	14	2.8	14	84	0	51	35	0	17	46	1.49
14730072--14730125	14	3.5	14	75	22	54	46	20	22	11	1.82
14730085--14730130	14	2.8	17	75	25	53	45	19	21	13	1.84
14730149--14730204	20	2.8	20	91	0	94	16	23	21	39	1.92
14730428--14730452	12	2.1	12	100	0	50	0	28	0	72	0.86
14730683--14730771	20	4.4	20	92	0	124	24	20	28	26	1.99
14735594--14735628	11	2.8	13	83	16	56	77	0	0	22	0.78
14735590--14735630	18	2.4	17	84	8	57	75	0	0	24	0.80
14738066--14738122	30	1.9	30	96	0	105	35	8	8	47	1.66
14738466--14738688	90	2.4	90	87	2	329	41	13	8	36	1.75
14738621--14738752	26	5.0	26	71	11	97	38	15	10	34	1.83
14738611--14738767	80	2.0	78	88	2	233	38	14	9	36	1.79
14738688--14739005	92	3.4	93	85	8	416	38	14	8	37	1.78
14739413--14739469	30	1.9	30	96	0	105	45	8	10	35	1.70
14739955--14740010	9	6.1	9	79	4	67	35	0	0	64	0.94
14739955--14740010	27	2.0	28	89	3	87	35	0	0	64	0.94
14739881--14740187	114	2.7	114	86	2	415	35	0	6	57	1.31
14740065--14740118	15	3.2	17	76	12	51	33	0	1	64	1.04
14740065--14740127	32	2.1	31	82	11	78	33	0	1	65	1.03
14740305--14740347	15	3.0	14	83	13	52	41	0	0	58	0.98
14740725--14740759	17	2.1	17	94	0	61	54	14	0	31	1.40
14746092--14746126	16	2.2	16	94	0	61	45	0	5	48	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14746179--14746212	17	1.9	18	94	5	61	64	0	2	32	1.08
14748250--14748277	2	14.0	2	100	0	56	50	0	0	50	1.00
14748329--14748362	17	1.9	18	94	5	61	64	0	2	32	1.08
14753931--14753957	14	1.9	14	100	0	54	0	25	14	59	1.36
14753950--14753975	10	2.6	10	100	0	52	0	34	15	50	1.45
14754404--14754492	3	30.0	3	77	15	87	66	2	0	31	1.04
14754636--14754916	120	2.3	122	84	7	342	23	18	15	42	1.88
14754863--14754951	36	2.5	36	94	0	151	20	21	10	48	1.78
14755005--14755107	38	2.6	39	89	7	145	23	22	10	43	1.84
14755033--14755094	19	3.3	19	70	17	56	20	24	12	41	1.87
14754846--14755177	154	2.2	145	89	5	495	29	19	12	38	1.88
14755088--14755275	98	1.9	98	98	0	367	34	16	12	36	1.87
14755186--14755564	113	3.4	113	94	0	632	27	19	14	38	1.91
14756257--14756572	115	2.8	115	95	0	544	32	20	13	33	1.92
14756527--14756745	83	2.6	83	94	0	366	37	22	12	26	1.90
14757894--14757941	7	6.9	7	79	15	55	0	16	0	83	0.65
14757892--14757947	23	2.4	24	88	11	82	0	19	0	80	0.71
14765271--14765302	15	2.1	15	94	0	55	46	9	18	25	1.79
14770353--14770378	10	2.6	10	100	0	52	0	42	15	42	1.47
14770807--14770895	3	30.0	3	79	10	94	67	2	0	30	1.03
14772115--14772155	12	3.3	12	80	6	55	63	2	2	31	1.20
14784007--14784032	3	8.7	3	100	0	52	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14785917--14786044	65	2.0	62	93	4	220	32	18	14	34	1.91
14787053--14787083	16	1.9	16	100	0	62	12	35	12	38	1.82
14790218--14790297	34	2.3	35	89	4	135	33	6	17	42	1.74
14790332--14790379	25	1.9	25	82	0	60	68	8	6	16	1.35
14791388--14791427	18	2.2	19	90	4	64	27	15	27	30	1.96
14791439--14791507	31	2.2	31	89	0	102	43	8	14	33	1.76
14794820--14794888	2	35.5	2	88	11	108	50	1	0	47	1.09
14795563--14795636	23	3.2	23	81	7	96	18	25	21	33	1.96
14796819--14796849	15	2.1	15	100	0	62	32	19	6	41	1.77
14796853--14796903	27	2.0	25	88	7	75	52	11	0	35	1.38
14802764--14802870	20	5.3	20	81	10	121	41	24	14	19	1.89
14802743--14802875	60	2.2	61	77	9	148	39	21	16	21	1.92
14802776--14802870	40	2.4	40	92	0	154	41	24	14	20	1.89
14802986--14803036	22	2.3	22	93	0	84	21	41	13	23	1.89
14803443--14803482	20	2.0	20	90	4	64	10	12	25	52	1.70
14803471--14803504	14	2.4	14	90	0	50	11	20	17	50	1.77
14803453--14803523	20	3.8	20	70	22	64	11	18	19	50	1.76
14803453--14803523	34	2.1	35	91	2	117	11	18	19	50	1.76
14803487--14803530	20	2.2	20	83	0	52	13	18	18	50	1.79
14805657--14805755	42	2.4	42	80	10	121	23	34	20	22	1.97
14805657--14805755	21	4.7	20	72	14	65	23	34	20	22	1.97
14806983--14807035	24	2.2	24	100	0	106	22	0	33	43	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14807126--14807301	66	2.6	65	86	10	232	28	2	15	53	1.55
14807349--14807410	20	3.1	20	88	9	99	43	19	22	14	1.87
14807394--14807478	34	2.5	34	86	0	107	40	16	22	21	1.91
14808869--14808918	25	2.0	25	96	0	91	44	22	8	26	1.80
14809006--14809055	20	2.5	20	73	0	55	30	20	26	24	1.98
14809357--14809392	18	2.0	18	88	0	54	22	2	22	52	1.59
14812671--14812777	20	5.3	20	82	4	117	17	14	25	42	1.87
14812651--14812777	40	3.2	40	80	7	132	19	14	24	41	1.88
14812771--14812815	20	2.2	20	92	0	72	20	17	24	37	1.93
14812651--14812797	60	2.4	60	82	9	167	20	14	23	40	1.90
14812837--14812873	19	1.9	19	88	0	56	27	10	29	32	1.90
14816086--14816124	15	2.6	15	83	0	51	46	23	7	23	1.78
14816694--14817007	159	2.0	161	91	4	519	50	11	10	27	1.71
14817744--14817802	4	14.8	4	89	0	91	47	25	3	23	1.67
14820497--14820548	24	2.1	25	92	3	88	48	11	7	32	1.68
14828226--14828402	90	2.0	89	95	1	318	37	11	6	44	1.67
14832762--14832803	18	2.3	18	100	0	84	14	45	21	19	1.85
14833473--14833508	15	2.3	16	85	9	56	27	8	11	52	1.65
14833546--14833630	33	2.6	33	78	7	86	34	3	8	54	1.48
14833864--14833913	23	2.2	23	81	0	55	38	2	6	54	1.37
14836957--14837025	2	34.5	2	100	0	138	50	0	0	49	1.00
14838711--14838775	31	2.1	31	85	0	85	23	23	32	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14842139--14842213	19	3.9	19	96	0	132	20	30	32	17	1.95
14850014--14850082	28	2.4	29	87	2	104	44	17	0	37	1.49
14851282--14851318	19	2.0	19	89	5	58	32	0	2	64	1.07
14851377--14851452	16	4.6	16	74	18	66	38	1	0	60	1.05
14851387--14851448	10	6.5	10	71	22	53	37	0	0	62	0.95
14851392--14851450	13	5.0	12	76	19	54	37	0	0	62	0.95
14851824--14851882	23	2.6	23	88	0	91	47	13	10	28	1.75
14853372--14853445	33	2.2	33	80	4	87	35	13	22	28	1.92
14854116--14854159	20	2.2	20	84	8	54	31	4	11	52	1.57
14857819--14857851	15	2.2	15	100	0	66	42	9	12	36	1.74
14857919--14857968	23	2.2	23	92	0	82	40	10	10	40	1.72
14860566--14860606	20	2.0	21	85	4	57	34	21	17	26	1.95
14879171--14879210	19	2.1	19	86	9	55	60	5	0	35	1.19
14886807--14886860	28	1.9	28	85	7	74	51	12	3	31	1.57
14887589--14887613	12	2.1	12	100	0	50	28	0	8	64	1.22
14888045--14888186	72	1.9	74	92	4	243	31	7	27	33	1.85
14888468--14888619	61	2.5	61	94	0	259	21	19	27	31	1.97
14888474--14888707	40	5.8	40	86	6	260	22	20	25	32	1.98
14888463--14888703	101	2.4	102	89	4	371	21	19	25	33	1.97
14888474--14888707	61	3.9	59	85	4	256	22	20	25	32	1.98
14889320--14889358	5	7.6	5	97	2	69	0	20	56	23	1.42
14889455--14889724	42	6.5	41	92	2	425	35	24	18	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14889487--14889743	21	12.3	21	74	14	210	35	25	18	20	1.96
14889748--14889788	21	2.0	21	95	0	73	21	21	26	29	1.99
14893836--14893923	21	4.2	21	76	4	70	22	0	30	46	1.52
14896752--14896825	20	3.6	21	80	8	82	43	17	18	20	1.88
14897418--14897596	19	10.1	19	72	19	145	11	24	20	43	1.85
14897418--14897534	52	2.2	52	95	0	207	11	23	22	43	1.84
14897473--14897571	33	3.0	33	95	1	171	11	25	23	40	1.87
14897492--14897547	14	3.6	14	74	21	58	10	25	25	39	1.87
14899716--14899782	21	3.2	21	66	6	55	23	35	20	19	1.95
14899664--14899782	42	2.8	42	81	5	107	22	36	18	22	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73