genome.fa.s8364.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008364.1 Hibiscus syriacus cultivar Beakdansim tig00111105_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5892847

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  2  of  27  ( 3136 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
194987--195012	2	13.0	2	100	0	52	50	0	0	50	1.00
203378--203426	3	16.3	3	83	8	64	61	2	2	34	1.19
203380--203421	22	1.9	22	90	0	66	59	2	2	35	1.23
203382--203428	19	2.4	20	79	13	62	59	2	2	36	1.21
203654--203899	85	3.0	84	77	5	243	24	21	24	29	1.99
204091--205132	105	10.0	105	93	2	1654	23	18	25	33	1.97
204134--205132	314	3.2	314	94	1	1691	23	17	25	33	1.97
204091--205136	419	2.5	417	91	2	1690	23	17	25	32	1.97
209987--210035	3	16.3	3	83	8	64	61	2	2	34	1.19
209989--210030	22	1.9	22	90	0	66	59	2	2	35	1.23
209991--210037	19	2.4	20	79	13	62	59	2	2	36	1.21
210964--211349	193	2.0	193	100	0	772	32	17	21	29	1.96
213749--213779	3	10.0	3	93	6	53	0	67	0	32	0.91
216836--216873	16	2.4	16	95	0	67	44	0	23	31	1.54
217431--217462	15	2.1	15	100	0	64	37	18	0	43	1.51
221134--221240	48	2.2	48	79	11	112	34	4	4	56	1.41
222002--222036	17	2.0	18	88	5	54	62	2	8	25	1.38
223652--223695	20	2.2	20	88	8	63	22	20	11	45	1.83
233432--233498	28	2.4	28	80	7	75	50	8	0	40	1.34
234763--234877	60	1.9	60	82	3	142	28	23	6	40	1.80
235027--235058	5	6.8	5	86	13	50	62	0	0	37	0.95
235603--235636	2	17.0	2	100	0	68	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
245131--245228	21	4.8	20	76	10	74	37	21	19	21	1.94
245196--245388	20	9.6	20	83	5	237	35	27	18	18	1.95
245765--245835	33	2.2	33	92	0	115	11	22	16	49	1.78
245916--246023	21	5.7	20	74	15	95	45	19	24	11	1.82
245916--245992	21	3.8	20	82	5	100	45	16	24	12	1.83
245915--245992	41	1.9	41	97	0	147	44	16	25	12	1.83
245928--246034	19	5.7	19	71	16	80	46	20	22	10	1.80
246030--246155	19	7.1	19	72	18	101	11	24	19	45	1.82
246052--246108	14	3.7	14	75	20	60	8	24	22	43	1.81
246035--246155	33	3.5	33	92	6	179	10	23	19	46	1.81
247802--248263	92	5.1	93	94	4	825	22	13	18	45	1.84
248342--248439	19	5.7	18	70	22	77	46	23	20	9	1.79
248310--248434	33	3.8	33	88	1	187	47	24	19	9	1.79
248310--248434	66	1.9	67	94	1	225	47	24	19	9	1.79
248435--248585	19	8.5	19	73	14	124	8	19	25	47	1.77
248435--248527	33	2.8	34	86	1	134	9	19	24	46	1.80
248429--248585	56	2.9	56	76	15	170	9	19	24	45	1.80
248446--248584	37	3.9	37	77	11	116	8	20	24	46	1.78
250378--250416	14	2.8	13	85	11	51	35	0	23	41	1.55
250378--250416	13	2.8	14	88	7	53	35	0	23	41	1.55
250518--250632	19	6.7	18	79	17	129	43	18	24	13	1.86
250518--250632	52	2.2	52	98	1	223	43	18	24	13	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
250628--250873	18	14.4	17	72	22	164	14	22	17	45	1.85
250622--250845	51	4.3	51	88	8	296	14	24	16	44	1.86
250628--250821	34	5.8	32	82	13	198	13	23	17	44	1.85
250678--250887	85	2.5	85	92	6	347	13	23	18	45	1.84
250628--250873	136	1.8	136	90	7	401	14	22	17	45	1.85
250659--250873	51	4.2	52	87	8	214	13	22	17	45	1.84
250806--250887	33	2.5	32	84	4	110	15	20	18	45	1.86
250761--250873	53	2.2	52	91	4	147	15	21	17	46	1.84
253075--253099	12	2.1	12	100	0	50	0	28	0	72	0.86
253272--253318	24	2.0	24	87	8	69	38	21	14	25	1.92
254011--254239	20	11.4	20	87	1	244	19	17	25	37	1.94
254233--254282	21	2.4	20	80	9	55	26	18	20	36	1.95
258373--258401	2	14.5	2	100	0	58	51	0	0	48	1.00
267698--267727	2	15.0	2	100	0	60	50	0	0	50	1.00
271110--271156	25	2.0	23	83	8	58	53	2	0	44	1.12
273545--273648	29	3.5	28	67	14	75	31	13	19	35	1.90
273546--273671	60	2.1	61	88	8	188	33	15	17	33	1.92
277318--277379	23	2.7	23	80	2	72	32	19	17	30	1.95
284284--284310	2	13.5	2	100	0	54	48	0	0	51	1.00
284562--284614	26	2.1	25	89	3	79	47	11	0	41	1.39
285861--285914	20	2.7	20	91	0	81	31	22	1	44	1.63
287007--287040	16	2.1	16	88	0	50	50	0	2	47	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287081--287114	16	2.0	18	88	11	54	26	2	5	64	1.30
287581--287828	130	1.9	130	91	0	406	34	12	15	36	1.86
288221--288296	35	2.2	35	92	0	125	35	2	22	39	1.68
288979--289038	26	2.4	24	86	10	77	40	1	8	50	1.43
289651--289694	19	2.3	19	92	0	70	34	20	22	22	1.97
293187--293308	16	7.4	15	69	21	59	60	0	0	37	1.08
293176--293283	32	3.4	31	77	15	105	63	0	0	34	1.07
293200--293283	14	6.0	14	70	23	61	63	0	1	35	1.03
293281--293320	13	3.2	13	80	20	57	47	0	0	52	1.00
293281--293318	12	3.1	12	79	20	51	47	0	0	52	1.00
294888--294921	18	1.9	17	88	5	50	79	5	0	14	0.91
296898--296939	18	2.3	19	91	8	77	57	4	0	38	1.20
297089--297157	27	2.6	26	78	15	77	24	4	1	69	1.15
297748--298116	20	18.5	20	85	4	458	34	26	18	20	1.96
298799--298845	24	2.0	24	87	8	69	25	14	21	38	1.92
299020--299044	12	2.1	12	100	0	50	72	0	28	0	0.86
301327--301581	19	14.4	19	78	16	289	48	18	19	13	1.81
301355--301581	52	4.2	52	88	6	257	48	17	20	14	1.81
301394--301619	71	3.2	71	81	13	284	47	17	19	15	1.83
301327--301581	90	2.9	89	87	6	360	48	18	19	13	1.81
301327--301619	142	2.1	139	89	5	439	47	18	19	14	1.83
301446--301603	52	2.9	52	92	4	244	46	17	20	15	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301610--301711	19	5.6	19	85	12	151	14	23	17	44	1.86
301818--301854	14	2.6	14	91	0	65	45	21	0	32	1.52
303834--303890	14	3.7	14	77	20	60	45	22	21	10	1.82
303815--303907	33	2.8	33	95	0	168	47	21	20	10	1.80
303778--303912	19	7.6	19	76	16	128	45	23	19	11	1.82
303908--304017	19	6.3	18	71	20	83	9	17	28	45	1.78
303908--303999	33	2.8	33	93	3	150	7	18	28	45	1.76
304061--304718	93	7.1	93	99	0	1293	46	18	12	22	1.83
304061--304718	185	3.5	186	99	0	1293	46	18	12	22	1.83
304061--304718	278	2.4	278	99	0	1307	46	18	12	22	1.83
306424--306513	14	5.7	14	74	23	81	42	23	25	8	1.83
306416--306530	33	3.5	33	95	0	212	45	20	24	9	1.81
306423--306535	19	6.8	18	72	23	88	43	22	24	9	1.83
306547--306601	14	3.6	14	73	21	56	9	25	23	41	1.83
306531--306601	33	2.2	33	94	0	124	8	22	25	43	1.81
306542--306623	33	2.5	33	89	2	119	9	25	21	42	1.84
306554--306642	20	4.8	20	72	19	75	12	24	19	43	1.85
306722--306792	33	2.2	33	92	0	115	47	18	22	11	1.80
307174--307366	20	9.6	20	82	5	219	19	19	25	35	1.95
307174--307366	60	3.2	60	83	0	251	19	19	25	35	1.95
307422--307473	20	2.6	20	96	0	95	21	13	26	38	1.90
320856--320881	11	2.4	11	100	0	52	11	34	26	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321758--321827	33	2.1	35	91	5	117	11	10	17	61	1.56
323807--323866	22	2.6	23	84	10	86	43	5	0	51	1.23
323796--323883	25	3.5	25	82	14	94	42	3	1	53	1.25
324054--324112	31	1.9	31	96	0	109	52	10	11	25	1.69
328897--328935	3	13.0	3	100	0	78	33	0	0	66	0.92
337103--337410	153	2.0	155	98	1	602	33	16	25	24	1.95
337791--337819	5	6.0	5	92	8	51	37	20	41	0	1.53
338547--338607	21	3.0	21	81	13	65	34	18	22	24	1.96
339808--339844	19	1.9	19	100	0	74	43	10	10	35	1.75
340685--340728	17	2.6	17	86	10	56	63	2	2	31	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27