genome.fa.s8364.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008364.1 Hibiscus syriacus cultivar Beakdansim tig00111105_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5892847

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  22  of  27  ( 3136 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5036723--5036847	21	6.0	21	82	3	146	20	22	18	39	1.93
5036744--5036870	41	3.1	41	90	2	193	22	21	18	37	1.95
5036729--5036857	62	2.1	62	79	2	134	21	21	18	37	1.94
5036849--5036940	20	4.6	20	82	8	114	41	18	19	20	1.91
5036833--5036966	41	3.3	40	77	10	119	37	18	17	26	1.93
5037509--5037593	19	4.7	19	77	15	81	48	21	20	10	1.79
5037594--5037647	14	3.5	14	73	22	54	9	24	22	44	1.81
5037589--5037696	33	3.1	33	82	10	126	11	25	19	44	1.83
5037606--5037696	20	4.9	20	74	17	81	10	24	19	45	1.83
5039427--5039728	94	3.2	93	94	0	514	20	12	19	47	1.81
5039819--5039928	19	6.3	19	68	21	69	50	23	17	8	1.72
5039825--5039927	33	3.1	33	84	2	136	51	24	16	7	1.70
5039891--5039928	20	1.9	20	88	0	58	55	28	10	5	1.56
5039934--5040047	20	5.8	19	82	6	120	12	20	19	48	1.80
5039934--5040023	19	4.6	20	83	9	114	11	21	20	47	1.80
5039934--5040047	39	2.9	38	81	6	120	12	20	19	48	1.80
5040500--5040566	21	3.2	21	66	6	55	23	35	20	19	1.95
5040473--5040566	42	2.2	42	81	7	102	22	35	21	21	1.96
5041918--5041953	14	2.6	14	95	0	63	33	0	22	44	1.53
5042060--5042139	33	2.4	33	93	0	133	46	22	21	10	1.81
5042060--5042120	19	3.5	19	74	21	69	44	21	22	11	1.84
5042149--5042275	33	3.8	33	86	4	184	12	24	18	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5042215--5042295	19	4.5	19	74	16	82	12	23	22	41	1.87
5042149--5042272	66	1.9	66	93	0	212	12	25	17	45	1.83
5042248--5042341	20	4.7	20	72	13	68	21	20	23	35	1.96
5044586--5044622	14	2.6	14	86	4	56	5	21	21	51	1.68
5044809--5044862	24	2.2	24	90	0	81	40	20	16	22	1.91
5045733--5045787	21	2.6	21	85	0	74	36	18	25	20	1.94
5054209--5054297	45	2.0	44	86	6	126	25	14	13	46	1.81
5057906--5057989	36	2.4	36	90	6	136	40	0	4	54	1.21
5057938--5057967	14	2.1	14	93	0	51	40	0	0	60	0.97
5057952--5058184	22	10.6	22	83	8	280	41	0	9	48	1.40
5057952--5058184	44	5.3	44	91	1	360	41	0	9	48	1.40
5064638--5064669	17	1.9	17	93	6	57	65	0	0	34	0.93
5064688--5064724	16	2.2	17	86	13	51	32	10	0	56	1.34
5065411--5065441	11	2.7	11	95	5	53	64	0	35	0	0.94
5065422--5065457	14	2.6	14	95	0	63	61	0	38	0	0.96
5068609--5068652	17	2.9	15	86	10	54	43	0	2	54	1.12
5071393--5071442	11	4.5	11	76	16	50	2	36	0	62	1.07
5078139--5078227	28	3.2	28	100	0	178	39	14	23	22	1.91
5080755--5080782	2	14.0	2	100	0	56	50	0	0	50	1.00
5080806--5080830	13	1.9	13	100	0	50	16	12	32	40	1.84
5080864--5080916	2	26.5	2	100	0	106	49	0	0	50	1.00
5082020--5082057	19	2.0	20	89	5	60	42	0	2	55	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5086729--5086778	21	2.4	22	86	10	77	44	26	10	20	1.82
5093019--5093154	37	3.7	36	92	5	211	39	24	16	19	1.91
5093031--5093193	37	4.5	35	86	6	134	39	24	17	18	1.91
5093026--5093208	70	2.5	71	82	10	194	40	24	16	18	1.91
5093222--5093289	22	3.2	22	72	16	79	25	22	19	33	1.97
5093209--5093302	42	2.2	42	94	0	161	26	20	20	32	1.97
5093209--5093318	42	2.6	42	89	2	150	27	20	20	30	1.98
5093241--5094193	216	4.4	216	93	0	1564	32	15	19	32	1.93
5101594--5101755	41	3.9	41	76	1	171	25	20	22	30	1.99
5101584--5101783	83	2.4	83	88	0	292	26	19	22	32	1.97
5101815--5101988	56	3.1	55	81	11	173	33	15	23	27	1.95
5101888--5101996	55	2.0	56	85	8	152	33	13	27	25	1.94
5103387--5103429	23	1.9	22	85	4	59	23	2	4	69	1.18
5110351--5110403	23	2.3	23	83	3	63	22	33	16	26	1.96
5110896--5110929	13	2.6	13	90	9	52	29	17	5	47	1.71
5112865--5112909	23	2.0	23	81	0	54	24	31	24	20	1.98
5112888--5113192	149	2.0	149	98	0	583	33	21	16	27	1.95
5113825--5113869	21	2.1	21	87	0	63	15	24	28	31	1.96
5115172--5115209	19	2.0	20	89	5	60	42	0	2	55	1.14
5115353--5115560	76	2.7	76	90	1	319	27	26	21	23	1.99
5117520--5117571	21	2.5	21	81	3	61	38	19	25	17	1.93
5117560--5117613	20	2.7	20	91	0	90	31	22	18	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5118211--5118252	19	2.2	19	86	0	57	50	28	16	4	1.66
5118248--5118416	19	9.1	19	83	7	222	11	21	19	46	1.82
5120475--5120541	21	3.2	21	66	6	55	23	35	20	19	1.95
5121899--5121934	14	2.6	14	90	0	54	27	2	25	44	1.68
5122113--5122263	19	8.7	19	63	21	71	15	22	19	42	1.89
5122117--5122243	33	3.9	32	85	8	184	14	22	18	43	1.87
5122110--5122242	66	2.0	66	95	0	239	16	22	18	42	1.89
5124732--5124778	24	2.0	24	91	0	76	36	21	17	25	1.94
5125837--5125895	20	2.9	20	94	2	100	38	23	22	15	1.92
5125914--5125981	19	3.8	19	83	12	92	13	20	17	48	1.80
5126097--5126133	14	2.6	14	86	0	56	48	21	0	29	1.50
5127983--5128067	19	4.5	19	79	4	82	40	21	22	16	1.91
5127983--5128056	39	1.9	38	83	2	94	39	20	22	17	1.92
5128033--5128074	18	2.2	19	87	8	59	52	19	16	11	1.74
5128039--5128096	18	3.5	17	77	18	59	46	27	17	8	1.77
5128114--5128171	14	3.9	14	75	16	62	10	15	24	50	1.75
5128097--5128186	32	2.8	33	89	5	148	12	16	22	48	1.79
5128180--5128225	20	2.3	20	88	0	65	15	21	26	36	1.93
5128699--5128734	18	2.0	18	88	0	54	13	13	47	25	1.80
5128982--5129305	164	2.0	164	95	3	591	37	15	12	33	1.86
5130720--5130833	20	5.7	20	80	6	113	25	18	25	30	1.98
5130823--5130915	20	4.5	21	78	4	100	17	24	18	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5130823--5130915	41	2.3	41	100	0	150	17	24	18	39	1.91
5135232--5135288	22	2.7	20	79	15	60	21	5	35	38	1.76
5144622--5144720	49	2.0	49	96	0	180	36	22	8	33	1.83
5144786--5144816	16	1.9	16	93	0	53	32	22	16	29	1.95
5146577--5146627	24	2.1	25	81	3	59	21	11	15	50	1.76
5149819--5149890	20	3.6	21	81	7	78	34	26	11	27	1.90
5150045--5150102	22	2.7	22	86	5	84	18	43	12	25	1.85
5152454--5152499	4	11.5	4	80	0	56	26	2	4	67	1.21
5152609--5152709	21	4.8	21	79	9	107	19	36	18	24	1.95
5152609--5152709	42	2.4	42	89	0	148	19	36	18	24	1.95
5154099--5154212	37	3.4	37	68	26	115	29	1	18	50	1.57
5154079--5154231	64	2.4	64	94	0	270	30	1	18	49	1.55
5154300--5154377	40	2.0	40	94	0	138	33	21	20	24	1.97
5154285--5154369	20	4.2	20	80	0	107	36	23	18	21	1.95
5154701--5154739	18	2.2	18	90	0	60	20	2	17	58	1.50
5158013--5158103	19	4.6	19	93	4	137	29	10	24	35	1.90
5158005--5158124	38	3.0	40	83	10	149	30	11	24	34	1.91
5160459--5160518	31	2.1	29	87	12	88	28	23	13	35	1.92
5161286--5161637	43	8.2	44	81	6	350	33	21	21	23	1.97
5161283--5161637	128	2.8	126	81	7	394	34	20	21	23	1.97
5161286--5161637	85	4.1	85	83	7	392	33	21	21	23	1.97
5165915--5166439	41	12.6	41	81	4	552	33	17	19	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5165962--5166423	125	3.7	123	82	5	408	33	17	19	30	1.95
5165915--5166440	166	3.2	166	89	0	777	33	17	19	29	1.95
5167113--5167360	103	2.4	106	80	10	284	27	9	13	50	1.71
5167113--5167360	50	4.9	51	83	8	283	27	9	13	50	1.71
5168065--5168168	40	2.6	40	89	0	154	39	25	14	21	1.91
5168065--5168168	20	5.2	20	68	17	72	39	25	14	21	1.91
5168264--5168319	20	2.8	20	86	0	76	37	10	17	33	1.85
5168264--5168327	20	3.2	19	80	4	65	32	10	21	34	1.89
5168303--5168492	57	3.3	57	79	1	236	28	13	20	38	1.90
5168419--5168657	77	3.1	77	85	2	352	27	12	21	38	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27