genome.fa.s8364.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008364.1 Hibiscus syriacus cultivar Beakdansim tig00111105_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5892847

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  26  of  27  ( 3136 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5729498--5729545	19	2.5	19	100	0	96	18	20	18	41	1.90
5729678--5729711	6	5.7	6	100	0	68	32	50	17	0	1.47
5730193--5730228	5	7.4	5	90	3	56	2	38	22	36	1.69
5730375--5730420	20	2.4	18	80	13	56	50	21	17	10	1.77
5730384--5730428	20	2.2	20	96	0	81	48	17	22	11	1.78
5730474--5730567	22	4.4	22	74	8	104	36	26	19	18	1.94
5730496--5730587	41	2.2	42	83	9	109	39	25	19	16	1.92
5730557--5730619	21	3.0	21	72	2	65	38	25	17	19	1.93
5730757--5730812	23	2.4	23	90	0	85	39	19	5	35	1.75
5730830--5730874	22	2.0	22	86	0	63	40	8	8	42	1.67
5731229--5731301	23	3.2	23	88	0	110	38	20	5	35	1.76
5731675--5731714	21	1.9	21	84	0	53	50	7	15	27	1.70
5731718--5731790	23	3.2	23	92	0	110	38	21	4	35	1.73
5730757--5732698	489	4.0	489	94	1	3333	40	10	7	40	1.68
5732206--5732278	23	3.2	23	94	0	119	39	21	4	34	1.73
5738667--5738724	23	2.5	23	82	0	71	55	13	20	10	1.68
5739331--5739369	19	2.1	19	95	0	69	33	28	15	23	1.95
5739453--5739603	20	7.4	20	77	12	155	34	27	15	21	1.94
5739452--5739623	20	8.4	21	74	13	135	37	26	15	21	1.93
5739452--5739623	41	4.2	41	94	0	299	37	26	15	21	1.93
5739774--5739824	22	2.3	22	93	0	84	19	43	15	21	1.88
5740830--5740866	14	2.6	14	100	0	74	29	0	21	48	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5740986--5741063	20	3.9	20	80	6	77	44	24	17	12	1.84
5740986--5741063	40	2.0	40	82	5	95	44	24	17	12	1.84
5741102--5741168	20	3.5	20	83	8	102	23	19	23	32	1.97
5741161--5741193	14	2.4	14	100	0	66	12	9	30	48	1.71
5741194--5741477	140	2.0	140	97	0	532	43	14	13	28	1.83
5741535--5741569	18	1.9	18	94	0	61	17	2	25	54	1.57
5743169--5743253	29	2.9	29	89	3	127	29	44	0	25	1.54
5745973--5746052	24	3.3	24	92	0	124	37	18	20	23	1.94
5745973--5746064	24	3.8	24	88	0	76	36	19	19	23	1.95
5746866--5746911	20	2.3	20	88	0	65	21	21	32	23	1.98
5751234--5751258	2	12.5	2	100	0	50	52	0	0	48	1.00
5761319--5761343	13	1.9	13	100	0	50	80	12	8	0	0.92
5761748--5761794	21	2.2	21	84	0	67	19	27	17	36	1.93
5761790--5761882	20	4.7	20	93	0	132	38	23	18	19	1.93
5762078--5762139	18	3.0	22	69	26	62	27	38	16	17	1.91
5762471--5762519	20	2.5	20	86	0	71	34	24	20	20	1.96
5762595--5762632	20	1.9	20	94	0	67	13	13	18	55	1.69
5762597--5762641	20	2.2	20	84	0	54	17	13	17	51	1.77
5764114--5764161	6	8.0	6	100	0	96	16	66	0	16	1.25
5764543--5764706	20	8.5	20	82	8	205	39	19	20	21	1.93
5764546--5764744	54	3.6	54	82	8	229	40	19	20	20	1.92
5764543--5764744	40	5.4	40	78	12	205	40	19	20	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5764751--5764799	20	2.5	20	83	6	64	20	22	24	32	1.98
5764840--5764926	20	4.3	20	91	2	131	20	17	21	40	1.92
5766869--5766904	14	2.6	14	90	0	54	30	0	22	47	1.52
5767039--5767145	19	5.8	19	80	12	134	46	16	20	15	1.84
5767006--5767132	38	3.6	33	80	14	121	44	18	22	14	1.86
5767149--5767229	33	2.4	33	87	2	117	12	24	22	40	1.88
5767201--5767289	20	4.4	20	88	2	135	17	22	24	34	1.96
5769576--5769622	24	2.0	24	95	0	85	34	17	21	27	1.95
5769580--5769631	24	2.2	24	85	0	68	36	19	19	25	1.95
5770440--5770594	20	7.7	19	87	5	175	23	20	19	36	1.95
5770441--5770594	60	2.5	60	88	3	220	24	20	18	37	1.94
5770591--5770636	21	2.2	21	88	0	65	36	17	28	17	1.92
5772135--5772186	20	2.6	19	79	8	59	65	0	0	34	0.93
5772038--5772272	120	2.0	118	83	6	289	46	7	7	38	1.60
5772368--5772410	13	3.1	14	83	10	61	69	0	4	25	1.07
5772368--5772410	3	14.3	3	80	9	52	69	0	4	25	1.07
5772368--5772432	12	5.2	12	72	20	53	66	1	4	27	1.20
5773743--5773822	3	28.0	3	79	14	71	61	1	0	37	1.04
5773766--5773826	16	3.9	15	76	20	63	67	1	0	31	1.01
5773743--5773825	22	3.9	22	81	6	82	61	1	0	37	1.04
5773764--5773832	25	2.7	25	86	2	93	68	2	0	28	1.04
5774205--5774835	113	5.6	113	95	0	1055	26	20	15	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5774093--5774835	227	3.3	226	90	2	1130	27	20	15	36	1.93
5774093--5774864	340	2.3	329	88	4	1109	27	20	15	36	1.93
5775271--5775326	23	2.5	22	80	5	67	35	12	14	37	1.84
5776612--5776782	76	2.3	76	83	1	218	32	23	13	30	1.93
5782959--5782997	15	2.7	15	88	4	53	51	12	15	20	1.76
5782951--5783006	14	3.9	14	79	4	58	55	8	12	23	1.65
5785147--5785369	120	1.9	119	82	4	279	44	7	8	39	1.63
5785470--5785534	12	5.2	12	76	10	58	64	1	4	29	1.22
5785470--5785504	16	2.3	15	90	5	52	68	0	5	25	1.11
5785470--5785512	3	14.3	3	80	9	52	67	0	4	27	1.10
5786810--5786890	3	28.0	3	79	12	71	60	1	1	37	1.13
5786832--5786900	23	3.0	23	79	8	79	68	2	1	27	1.13
5795012--5795046	18	1.9	18	88	0	52	14	8	2	74	1.17
5795288--5795338	20	2.5	21	90	3	77	43	17	19	19	1.89
5795555--5795596	19	2.2	19	87	8	59	14	19	21	45	1.85
5795564--5795604	19	2.2	19	86	0	55	14	19	19	46	1.84
5795703--5795739	14	2.6	14	91	0	65	45	21	0	32	1.52
5797629--5797692	19	3.6	19	72	20	75	45	23	20	10	1.82
5797689--5797773	19	4.4	19	81	10	93	10	18	22	48	1.79
5797689--5797773	38	2.2	39	89	6	129	10	18	22	48	1.79
5797699--5797779	19	4.2	19	81	9	101	8	19	19	51	1.72
5797870--5798149	94	3.1	93	89	5	419	47	18	11	22	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5799838--5799880	20	2.2	20	95	0	77	48	13	25	11	1.77
5799844--5799937	33	2.8	33	93	1	161	46	20	23	9	1.79
5799864--5799920	14	3.7	14	70	20	51	45	22	22	8	1.80
5799969--5800040	20	3.5	20	84	5	92	12	16	19	51	1.76
5800571--5800644	20	3.7	20	89	3	121	21	21	18	37	1.94
5801214--5801258	15	3.1	15	77	6	56	42	8	17	31	1.80
5801212--5801256	14	3.1	14	78	6	54	40	6	17	35	1.76
5801547--5801597	23	2.2	23	82	0	57	45	1	1	50	1.24
5801986--5802072	42	2.1	42	95	0	156	45	19	19	14	1.85
5802267--5802403	71	1.9	72	90	1	222	46	8	5	39	1.57
5802772--5802832	14	4.4	14	97	0	113	22	40	29	6	1.79
5802838--5802894	10	5.4	10	74	12	51	26	26	40	7	1.81
5802814--5802898	33	2.6	33	92	0	134	25	28	37	8	1.85
5802992--5803045	20	2.7	20	91	0	90	11	25	37	25	1.89
5803032--5803059	14	2.0	14	100	0	56	7	28	42	21	1.79
5802992--5803045	10	5.4	10	77	16	58	11	25	37	25	1.89
5803287--5803314	13	2.2	13	100	0	56	21	39	25	14	1.91
5803466--5803588	61	2.0	61	100	0	246	43	15	14	26	1.85
5807125--5807162	15	2.4	16	86	4	51	26	2	0	71	1.00
5808650--5808699	20	2.5	20	93	0	82	28	24	10	38	1.87
5809493--5809554	27	2.4	27	89	5	101	37	4	11	46	1.61
5812966--5813011	24	1.9	24	90	0	74	34	23	23	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5813005--5813062	23	2.5	23	88	0	89	36	25	18	18	1.95
5821499--5821569	33	2.2	33	92	0	124	54	5	9	29	1.56
5836498--5836549	26	2.0	26	100	0	104	34	15	23	26	1.94
5840910--5840946	20	1.9	19	89	10	58	45	5	18	29	1.72
5841092--5841170	37	2.1	38	81	11	92	50	3	1	44	1.28
5843096--5843402	21	15.0	21	72	16	198	20	19	23	35	1.96
5843198--5843353	63	2.5	62	86	4	224	20	19	24	35	1.95
5843167--5843370	105	1.9	105	95	0	372	20	18	24	36	1.95
5843261--5843399	42	3.3	42	94	0	242	20	18	23	36	1.95
5843177--5843395	105	2.1	103	89	5	348	21	18	23	36	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27