genome.fa.s8364.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008364.1 Hibiscus syriacus cultivar Beakdansim tig00111105_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5892847

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  3  of  27  ( 3136 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
344161--344221	23	2.7	23	86	0	86	24	27	27	19	1.99
344237--344454	103	2.1	103	97	0	409	36	23	12	27	1.91
345623--345667	21	2.1	21	83	0	54	20	22	24	33	1.97
349897--349993	44	2.2	44	85	7	126	26	23	21	27	1.99
352265--352464	65	3.1	63	78	13	210	31	23	17	27	1.97
355327--355380	27	2.0	27	82	13	67	33	5	11	50	1.61
355982--356010	15	1.9	15	100	0	58	20	17	34	27	1.95
357496--357529	17	2.0	17	88	0	50	32	2	8	55	1.45
359040--359084	9	4.9	9	86	13	65	88	2	8	0	0.58
359040--359085	10	4.9	10	86	10	62	89	2	8	0	0.57
364296--364376	19	4.2	19	72	18	69	69	0	2	28	1.02
364297--364374	38	2.0	38	87	7	111	67	0	2	29	1.03
366677--366768	36	2.6	36	89	3	141	19	26	22	31	1.98
371075--371418	186	1.8	187	88	1	521	40	4	9	45	1.58
371059--371453	186	2.1	184	84	5	443	41	4	8	45	1.57
371963--372011	17	2.8	17	81	9	55	32	4	2	61	1.26
371978--372011	17	1.9	18	94	5	61	29	5	0	64	1.17
374742--375093	194	1.8	190	84	6	483	37	11	14	36	1.82
375429--375470	22	1.9	22	85	9	59	52	7	2	38	1.42
381086--381153	31	2.1	32	84	10	86	45	1	1	51	1.19
381204--381274	24	2.9	25	76	16	69	40	1	2	54	1.23
381351--381381	14	2.1	15	94	5	55	45	6	12	35	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
385820--385894	38	2.0	37	82	10	91	48	4	2	45	1.35
386551--386635	27	3.0	27	73	11	82	60	0	1	38	1.05
386578--386633	21	2.8	20	81	5	60	57	0	1	41	1.09
386737--386854	23	4.8	24	76	10	105	54	1	0	43	1.16
386737--386855	49	2.4	47	85	8	166	54	1	0	42	1.16
386768--386854	24	3.6	25	72	16	92	54	1	1	43	1.15
386769--386877	49	2.2	49	82	9	125	55	0	3	40	1.24
387714--387747	13	2.6	13	85	0	50	50	0	8	41	1.34
398208--398247	5	8.0	5	100	0	80	60	0	40	0	0.97
402989--403059	36	2.0	36	97	0	133	35	26	12	25	1.92
404660--404706	24	2.0	24	86	0	67	59	2	4	34	1.29
408180--408328	29	5.1	31	84	11	201	32	16	12	38	1.86
411584--411734	65	2.3	65	84	5	191	27	19	21	31	1.97
411584--411784	65	3.1	65	77	11	182	26	18	22	31	1.98
413340--413420	24	3.6	23	73	17	80	28	23	24	23	2.00
417241--417280	21	1.9	21	85	10	55	35	7	2	55	1.42
421761--421808	24	2.0	24	100	0	96	50	8	16	25	1.73
429245--429601	60	5.9	60	90	0	527	35	19	20	24	1.96
429542--430596	533	2.0	528	91	2	1700	34	17	19	28	1.94
430743--430783	21	2.0	21	90	4	66	46	0	17	36	1.48
434114--434158	22	2.1	21	87	4	63	35	4	8	51	1.54
435050--435094	22	2.0	22	86	4	63	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441509--441536	2	14.0	2	100	0	56	50	0	0	50	1.00
451857--451885	12	2.4	12	100	0	58	24	13	0	62	1.32
454081--454131	20	2.5	20	93	6	86	49	11	19	19	1.79
454286--454318	15	2.2	15	94	0	57	54	0	0	45	0.99
458143--458189	21	2.2	21	81	11	60	8	14	10	65	1.45
461278--461323	23	2.0	23	87	12	67	65	0	6	28	1.17
474581--474650	18	3.9	18	94	3	115	28	34	20	17	1.95
484146--484175	3	10.0	3	100	0	60	66	0	0	33	0.92
485537--485602	2	33.0	2	100	0	132	50	0	0	50	1.00
493873--493904	2	16.0	2	100	0	64	50	0	0	50	1.00
494196--494220	6	4.2	6	100	0	50	84	0	0	16	0.63
496002--496066	29	2.2	30	84	13	82	40	0	0	60	0.97
496447--496474	2	14.0	2	100	0	56	50	0	0	50	1.00
501263--501303	21	2.0	21	95	0	73	56	0	2	41	1.13
504722--504759	14	2.9	13	84	11	51	57	0	0	42	0.98
505017--506209	105	11.4	105	96	0	2149	22	18	24	33	1.96
517797--517841	20	2.1	21	84	8	56	66	0	15	17	1.25
517914--517957	2	22.0	2	90	0	70	47	2	2	47	1.27
519145--519188	2	23.5	2	82	13	58	54	0	0	45	0.99
519145--519188	15	3.1	15	90	9	74	54	0	0	45	0.99
519145--519187	22	2.0	22	95	0	77	55	0	0	44	0.99
519865--519892	13	2.2	13	100	0	56	14	28	0	57	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
522671--522704	17	2.0	17	100	0	68	35	11	11	41	1.78
532960--533024	23	2.8	24	86	11	82	44	1	0	53	1.09
532960--533027	8	8.6	8	73	13	52	44	1	0	54	1.09
535663--535710	16	3.0	16	84	6	62	27	12	14	45	1.81
539282--539323	20	2.2	19	83	12	50	61	14	0	23	1.32
539887--539935	25	2.0	25	100	0	98	28	20	22	28	1.98
545836--545882	23	2.0	23	100	0	94	25	8	8	57	1.57
547572--547620	22	2.2	22	78	7	55	65	10	6	18	1.43
553690--553729	8	4.7	9	81	12	57	60	0	0	40	0.97
553690--553731	17	2.5	17	88	7	59	59	0	0	40	0.97
554133--554178	24	1.9	24	86	0	65	6	26	19	47	1.73
556184--556495	155	2.0	157	95	5	562	39	9	24	25	1.86
559020--559148	65	2.0	64	98	1	249	44	15	20	19	1.86
560362--560399	18	2.1	18	100	0	76	42	5	15	36	1.70
571488--571700	105	2.0	105	97	0	399	38	19	12	29	1.89
571972--572024	27	1.9	28	92	3	90	43	22	5	28	1.76
575561--575725	30	5.5	30	83	2	188	37	19	21	21	1.94
581719--581795	9	8.4	9	73	2	64	57	0	42	0	0.99
581736--581796	31	2.0	31	96	0	113	50	0	49	0	1.00
581725--581796	6	11.8	6	95	2	108	54	0	45	0	0.99
585244--585272	3	9.7	3	100	0	58	34	31	34	0	1.58
591707--591744	19	2.0	19	85	10	51	50	13	2	34	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
593607--593638	2	16.0	2	100	0	64	50	0	0	50	1.00
599132--599172	4	10.5	4	89	5	66	26	0	26	46	1.53
599135--599172	19	2.0	19	94	0	67	26	0	28	44	1.54
600180--600289	46	2.4	46	98	0	211	38	8	16	37	1.78
601289--601338	21	2.4	21	93	0	82	28	28	22	22	1.99
601470--601543	21	3.6	21	85	1	105	28	25	21	24	1.99
601556--601626	21	3.4	21	92	0	115	23	21	26	28	1.99
614397--614436	20	2.0	20	85	9	55	47	0	2	50	1.14
615184--615257	38	1.9	38	100	0	148	21	8	21	48	1.76
615340--615393	20	2.8	20	86	8	67	27	5	1	64	1.26
616228--616272	22	2.2	20	84	8	54	40	0	2	57	1.11
624595--624658	24	2.6	25	85	4	87	54	15	9	20	1.68
624625--624654	14	2.1	14	100	0	60	60	13	13	13	1.60
626483--626545	31	2.0	30	84	6	81	58	1	7	31	1.36
631202--631243	22	1.9	22	100	0	84	42	9	11	35	1.74
642338--642495	80	2.0	80	91	1	255	35	17	10	36	1.84
642517--642564	20	2.3	21	89	3	71	47	4	12	35	1.60
643077--643118	22	2.0	22	85	4	59	54	2	7	35	1.41
651151--651225	31	2.4	31	84	4	89	28	28	8	36	1.85
651261--651320	29	2.1	29	81	6	68	33	10	26	30	1.89
651417--651441	13	1.9	13	100	0	50	52	0	0	48	1.00
655605--655642	2	19.0	2	100	0	76	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
657150--657177	4	7.0	4	100	0	56	0	25	0	75	0.81
671842--672037	90	2.2	90	79	7	211	39	14	13	32	1.85
672095--672178	39	2.2	39	89	6	127	39	9	9	41	1.70
677867--677934	30	2.3	30	84	5	84	32	23	4	39	1.75
681545--681670	63	2.0	63	95	0	225	32	5	30	31	1.81
691330--691369	21	1.9	21	85	10	55	60	12	15	12	1.60
692344--692382	20	2.0	20	84	0	51	28	7	25	38	1.83
692971--693008	14	2.7	15	80	12	53	65	5	0	28	1.14
694080--694106	13	2.1	13	100	0	54	70	0	7	22	1.12
694585--694839	130	2.0	130	97	0	483	27	20	7	44	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27