genome.fa.s8364.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008364.1 Hibiscus syriacus cultivar Beakdansim tig00111105_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5892847

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  21  of  27  ( 3136 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4698248--4698286	20	2.0	20	89	0	60	69	0	0	30	0.89
4698158--4698388	120	1.9	120	85	5	317	46	7	8	37	1.63
4699865--4699936	30	2.4	29	82	13	85	68	1	0	30	0.99
4699901--4699940	20	2.1	19	90	4	62	72	5	0	22	1.04
4699869--4699952	30	2.7	29	78	10	78	70	2	1	26	1.07
4699899--4699940	22	2.0	20	90	9	66	71	4	0	23	1.05
4700186--4701079	113	7.9	113	94	0	1486	27	20	15	36	1.92
4701486--4701540	22	2.5	22	90	0	83	41	12	10	34	1.78
4711343--4711431	41	2.3	39	80	16	98	67	1	3	28	1.14
4711344--4711428	38	2.1	41	83	14	108	67	1	3	28	1.15
4711385--4711438	27	2.1	27	86	13	78	64	0	3	31	1.11
4712025--4712066	20	2.2	19	86	4	57	64	2	0	33	1.07
4711938--4712171	120	2.0	120	83	6	298	48	7	6	37	1.58
4712196--4712233	18	2.0	19	85	10	51	60	0	5	34	1.19
4712254--4712289	3	12.0	3	93	0	63	63	0	2	33	1.08
4713628--4713703	3	27.0	3	76	17	65	65	1	0	32	1.01
4713631--4713702	19	3.9	19	81	12	80	65	1	0	33	1.02
4713672--4713713	22	2.0	22	90	9	70	71	4	0	23	1.05
4713743--4713814	33	2.2	33	100	0	144	36	26	29	8	1.86
4715066--4715125	23	2.6	23	78	0	66	33	23	23	20	1.97
4716852--4716909	21	2.8	21	91	0	98	18	27	24	29	1.98
4720145--4720204	23	2.6	23	89	0	93	30	25	26	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4721932--4721987	21	2.7	21	91	0	94	19	30	19	30	1.97
4726170--4726207	16	2.3	17	86	4	51	42	2	7	47	1.46
4726761--4726794	17	2.0	17	94	0	59	52	20	11	14	1.73
4737947--4738033	42	2.1	42	88	0	129	40	14	5	39	1.70
4740203--4740232	13	2.3	13	100	0	60	20	13	10	56	1.65
4746219--4746258	20	2.1	19	86	9	55	50	12	17	20	1.78
4751901--4751946	18	2.6	18	83	10	58	43	2	0	54	1.12
4751941--4751982	20	2.2	19	87	12	59	42	0	0	57	0.99
4751959--4752003	14	3.2	14	77	0	54	44	0	0	55	0.99
4752064--4752128	23	2.9	24	82	8	66	49	0	3	47	1.17
4752077--4752142	34	1.9	33	82	17	82	45	0	3	51	1.16
4752081--4752146	24	2.8	23	81	9	62	45	0	3	51	1.16
4752173--4752257	22	3.8	20	80	16	80	50	0	2	47	1.14
4760523--4760569	21	2.2	21	92	0	85	29	17	25	27	1.97
4760530--4760576	21	2.2	21	88	0	67	31	17	27	23	1.96
4760544--4760640	41	2.4	41	84	6	117	19	20	24	35	1.96
4760572--4760637	20	3.2	20	68	19	64	15	21	24	39	1.91
4760727--4760763	6	6.5	6	96	3	60	29	54	16	0	1.43
4761250--4761289	5	7.6	5	97	2	62	0	20	55	25	1.44
4761304--4761384	39	2.1	39	97	0	153	27	22	19	30	1.98
4761412--4761533	21	5.9	21	70	18	103	36	26	21	16	1.94
4761443--4761591	20	7.3	20	67	15	90	38	24	20	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4761422--4761658	41	5.8	41	89	4	372	38	25	20	15	1.92
4763884--4763937	22	2.5	22	77	17	58	37	25	14	22	1.93
4764209--4764257	20	2.6	18	79	17	55	28	22	20	28	1.98
4783148--4783226	39	2.0	41	85	9	110	26	7	5	60	1.45
4783343--4783383	19	2.2	19	100	0	82	19	36	0	43	1.51
4787237--4787323	35	2.5	34	80	12	97	55	10	8	26	1.61
4789617--4789657	18	2.3	18	87	4	57	60	2	4	31	1.30
4790030--4790092	29	2.1	29	82	2	72	30	14	26	28	1.95
4790997--4791036	21	2.0	21	90	5	64	32	0	5	62	1.17
4795146--4795180	11	3.1	11	91	4	52	34	0	2	62	1.10
4803978--4804069	27	3.2	29	66	13	73	39	3	4	53	1.37
4809285--4809404	53	2.3	53	94	0	204	39	10	3	46	1.55
4809481--4809559	27	2.6	30	78	19	92	10	10	36	43	1.72
4809487--4809547	27	2.3	27	94	0	104	11	9	34	44	1.74
4810249--4810289	21	2.0	21	90	0	64	41	9	0	48	1.36
4813021--4813257	33	6.9	33	80	9	205	45	5	3	45	1.43
4813026--4813321	38	8.2	37	76	16	229	43	6	3	46	1.46
4813026--4813282	36	7.4	36	77	14	215	43	5	4	46	1.47
4813927--4814597	164	4.1	164	94	1	1089	23	20	24	30	1.99
4817947--4817991	19	2.4	19	92	3	74	66	8	13	11	1.44
4820475--4820512	15	2.5	15	83	8	51	0	10	28	60	1.30
4821003--4821049	25	1.9	25	83	12	62	55	4	2	38	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4821050--4821348	38	8.2	37	78	15	249	43	6	3	46	1.45
4823652--4823713	2	31.0	2	100	0	124	0	50	0	50	1.00
4824736--4824799	8	8.2	8	77	16	64	73	3	0	23	0.97
4824739--4824807	15	4.6	14	75	20	52	72	2	1	23	1.06
4824740--4824799	15	3.9	15	80	8	59	73	3	0	23	0.98
4825517--4825543	13	2.1	13	100	0	54	37	40	7	14	1.74
4832799--4832831	17	1.9	17	93	0	57	21	45	3	30	1.67
4834425--4834466	22	2.0	22	90	4	68	23	0	16	59	1.37
4834429--4834480	22	2.4	21	81	9	59	26	0	23	50	1.50
4835301--4835413	56	2.0	56	100	0	226	26	23	28	22	1.99
4836538--4836583	21	2.2	21	100	0	92	13	36	28	21	1.91
4842367--4842519	76	2.0	76	100	0	306	23	15	15	45	1.85
4851158--4851212	29	1.9	28	85	3	74	30	7	10	50	1.64
4855666--4855732	35	1.9	35	93	0	116	44	23	5	25	1.76
4855666--4855752	35	2.5	35	84	3	113	44	25	6	22	1.77
4856689--4856727	20	1.9	21	89	5	62	41	0	10	48	1.37
4858782--4858818	20	1.9	19	89	10	58	45	10	24	18	1.81
4859031--4859074	23	1.9	23	81	9	54	68	0	9	22	1.18
4861072--4861124	24	2.2	24	86	3	72	47	16	11	24	1.80
4863340--4863382	20	2.2	20	86	0	59	30	13	20	34	1.92
4870884--4870918	13	2.7	13	86	0	52	11	25	0	62	1.28
4872901--4872931	9	3.4	9	100	0	62	90	0	9	0	0.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4873491--4873533	20	2.2	20	83	8	52	30	11	20	37	1.89
4875506--4875534	14	2.1	14	100	0	58	51	13	13	20	1.75
4885017--4885046	4	7.5	4	100	0	60	76	23	0	0	0.78
4885753--4885788	19	1.9	20	88	11	58	52	8	13	25	1.68
4886183--4886254	31	2.3	31	100	0	144	20	31	5	41	1.76
4887522--4887592	37	1.9	36	94	2	124	29	9	4	56	1.51
4888036--4888080	17	2.6	17	96	0	81	11	42	0	46	1.39
4896528--4896654	51	2.5	51	76	3	141	15	32	30	21	1.94
4896766--4896805	20	2.1	19	90	4	62	35	22	0	42	1.54
4898492--4898531	18	2.2	18	95	0	71	30	32	15	22	1.94
4902668--4902791	50	2.5	51	86	4	180	25	21	25	26	2.00
4903489--4903530	7	6.0	7	100	0	84	42	0	28	28	1.56
4915280--4915497	103	2.1	103	93	0	373	27	12	23	37	1.90
4915504--4915581	23	3.3	23	76	1	75	25	19	21	33	1.97
4921057--4921274	103	2.1	103	93	0	382	26	14	22	36	1.92
4926790--4927007	103	2.1	103	95	0	400	26	13	23	36	1.92
4927047--4927090	23	1.9	23	90	0	70	27	20	22	29	1.99
4928094--4928132	10	4.2	9	87	12	53	25	2	0	71	0.98
4928065--4928125	18	3.4	18	71	17	56	29	1	3	65	1.18
4930182--4930347	44	3.8	44	88	2	244	21	4	7	67	1.32
4930273--4930351	25	3.4	24	68	18	69	21	2	6	69	1.23
4946892--4947013	56	2.1	56	96	3	226	29	13	5	51	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4948553--4948607	23	2.3	25	82	17	73	23	16	3	56	1.56
4948593--4948714	63	1.9	63	100	0	244	25	14	19	40	1.90
4968055--4968419	184	1.9	187	82	8	447	40	4	9	45	1.56
4968555--4968793	121	2.0	121	87	0	343	30	15	13	40	1.86
4969162--4969211	18	2.8	18	93	0	82	32	14	6	48	1.67
4979242--4979285	18	2.4	18	100	0	88	40	13	31	13	1.84
4996909--4996933	13	1.9	13	100	0	50	56	8	0	36	1.29
4999473--4999503	15	2.1	15	93	0	53	38	45	3	12	1.59
5007135--5007202	25	3.0	22	72	14	57	57	0	2	39	1.14
5015892--5015925	8	4.2	8	88	0	50	55	0	8	35	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27