Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008364.1 Hibiscus syriacus cultivar Beakdansim tig00111105_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5892847

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  27  of  27  ( 3136 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5844005--5844035
6
5.2
6
100
0
62
0
16
48
35
1.46
5844132--5844203
21
3.4
21
74
14
85
37
19
20
22
1.94
5844125--5844224
42
2.4
42
93
0
173
35
22
20
23
1.96
5844157--5844289
61
2.1
61
88
2
194
36
25
18
19
1.95
5844153--5844289
21
6.6
21
72
12
104
35
25
18
19
1.95
5844298--5844343
21
2.2
21
88
0
65
21
21
28
28
1.99
5844563--5844630
7
9.7
7
80
0
64
50
30
1
17
1.55
5844564--5844630
21
3.2
21
84
0
80
50
29
1
17
1.55
5846770--5846858
11
7.8
11
82
6
106
33
19
21
25
1.97
5846770--5846857
34
2.6
34
92
1
140
34
19
21
25
1.96
5846803--5846858
23
2.4
23
100
0
112
33
17
21
26
1.96
5866900--5866983
20
4.1
20
73
8
69
22
36
25
15
1.93
5884520--5884565
7
6.6
7
100
0
92
56
0
43
0
0.99
5889759--5889807
3
16.7
3
79
12
57
30
4
2
63
1.24
5889758--5889807
20
2.7
18
90
6
73
32
4
2
62
1.25
5890915--5890961
20
2.4
19
80
16
51
25
2
14
57
1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27

The End!