genome.fa.s8397.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008397.1 Hibiscus syriacus cultivar Beakdansim tig00111166_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2560905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  10  of  13  ( 1496 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1786912--1786993	18	4.6	19	79	14	95	14	20	20	43	1.87
1786987--1787032	20	2.3	20	88	0	65	15	21	26	36	1.93
1787520--1787557	18	2.1	18	90	0	58	13	15	44	26	1.83
1789178--1789221	22	2.0	22	95	0	79	18	15	45	20	1.85
1789413--1789502	20	4.4	20	76	2	72	24	17	24	33	1.96
1789429--1789506	41	1.9	41	83	0	102	23	16	20	39	1.92
1789447--1789547	20	4.9	21	71	12	59	18	19	18	42	1.89
1789389--1789503	20	5.7	20	74	5	70	24	16	22	36	1.94
1789492--1789605	21	5.5	21	81	3	124	16	24	18	40	1.91
1792380--1792450	20	3.5	19	79	9	70	40	26	9	22	1.85
1792420--1792486	20	3.3	20	85	10	82	29	23	13	32	1.93
1793331--1793398	24	2.8	24	77	0	73	26	16	17	39	1.90
1795638--1795666	12	2.4	12	100	0	58	51	24	6	17	1.69
1797385--1797457	21	3.5	21	86	0	101	21	21	35	20	1.96
1797385--1797465	42	1.9	42	92	0	135	23	20	35	19	1.96
1797862--1797914	21	2.5	21	81	6	63	32	33	11	22	1.90
1799468--1799506	20	2.0	20	100	0	78	15	10	20	53	1.70
1799470--1799513	20	2.2	20	91	0	70	15	11	20	52	1.74
1799833--1799890	22	2.7	22	86	5	75	25	13	41	18	1.88
1800049--1800115	20	3.4	19	72	13	55	20	11	29	37	1.89
1806548--1806580	8	4.0	8	96	4	57	48	3	0	48	1.17
1806997--1807025	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1810233--1810471	123	1.9	123	99	0	469	23	16	15	44	1.86
1819547--1819610	5	13.0	5	82	12	71	79	1	1	17	0.89
1819560--1819632	10	6.8	10	79	13	56	76	5	2	15	1.08
1819550--1819609	27	2.2	26	80	13	68	80	1	1	16	0.89
1819784--1819856	13	5.4	14	73	14	55	65	2	2	28	1.20
1819784--1819859	25	2.9	25	75	16	66	65	2	2	28	1.19
1819828--1819865	15	2.4	17	79	20	55	73	0	0	26	0.83
1819827--1819879	15	3.3	15	79	15	54	73	0	3	22	0.99
1819979--1820028	2	25.5	2	79	4	57	52	8	0	40	1.31
1819988--1820028	6	6.8	6	97	0	64	51	9	0	39	1.35
1821144--1821235	24	3.8	25	83	11	113	44	1	2	52	1.20
1821143--1821221	2	40.5	2	91	5	126	48	1	0	50	1.08
1821810--1822114	124	2.5	124	88	0	448	25	14	25	34	1.94
1822055--1822178	34	3.5	34	70	16	97	25	12	24	37	1.90
1822056--1822203	74	2.0	74	87	0	215	27	13	24	34	1.93
1822130--1822512	109	3.5	109	87	0	559	26	14	23	36	1.93
1822420--1822578	66	2.4	66	91	0	246	26	12	24	36	1.91
1822456--1822574	34	3.6	34	69	13	111	26	10	23	38	1.88
1823474--1823561	7	12.9	7	82	10	69	1	17	3	78	0.95
1823471--1823567	14	7.1	14	75	16	89	1	15	3	80	0.89
1823471--1823568	27	3.6	28	78	16	100	1	16	3	79	0.91
1823726--1823841	58	2.0	58	100	0	232	24	22	24	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1826549--1826897	174	2.0	175	99	0	691	25	21	21	31	1.98
1832601--1832631	13	2.5	12	90	10	53	9	6	3	80	0.99
1843504--1843548	18	2.5	18	88	0	72	17	20	31	31	1.96
1844767--1844813	21	2.3	20	82	7	58	29	4	12	53	1.58
1852788--1852858	13	5.3	13	77	11	72	63	2	2	30	1.23
1852990--1853029	21	1.9	21	85	10	55	57	5	2	35	1.34
1853892--1853928	20	1.9	19	89	10	58	45	10	24	18	1.81
1855415--1855476	18	3.2	20	78	19	62	61	0	1	37	1.06
1855471--1855627	64	2.5	64	93	4	266	56	1	0	42	1.07
1855527--1855631	25	4.2	25	78	15	94	57	0	0	41	1.05
1855530--1855615	26	3.4	27	78	12	85	55	1	0	43	1.07
1858482--1858561	39	2.1	39	95	0	142	41	12	22	23	1.88
1860390--1860447	27	2.1	28	84	9	75	48	13	15	22	1.80
1862829--1862868	21	1.9	21	94	0	71	30	15	7	47	1.72
1862863--1862962	34	3.0	33	89	4	148	32	8	15	45	1.75
1863198--1863254	21	2.7	21	91	0	96	19	26	26	28	1.99
1863439--1863472	18	1.9	18	88	5	52	41	11	8	38	1.73
1863420--1863475	15	3.6	15	74	9	58	33	12	10	42	1.77
1863566--1863597	16	2.0	17	88	11	50	43	21	21	12	1.86
1869509--1869553	23	2.0	23	87	8	67	46	8	6	37	1.61
1876902--1876948	22	2.1	23	88	4	69	40	23	10	25	1.87
1880763--1880821	3	19.7	3	100	0	118	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1885939--1886103	29	5.7	29	76	9	140	36	6	9	47	1.61
1885939--1886103	58	2.8	58	78	10	185	36	6	9	47	1.61
1887276--1887333	30	1.9	30	85	0	80	32	29	18	18	1.96
1892254--1892312	24	2.6	22	77	12	66	25	25	20	28	1.99
1898649--1898683	18	1.9	18	94	0	61	28	31	22	17	1.96
1903256--1903302	25	1.9	25	91	4	78	29	34	12	23	1.92
1909181--1909230	15	3.3	15	97	0	91	44	26	10	20	1.82
1911608--1911867	125	2.1	125	86	4	364	31	12	14	41	1.83
1912199--1912691	200	2.5	199	83	7	603	39	14	14	31	1.86
1912726--1912875	64	2.3	64	88	2	212	34	10	10	45	1.71
1912862--1912918	23	2.3	24	79	11	71	38	12	7	42	1.70
1920841--1920866	10	2.6	10	100	0	52	57	0	0	42	0.98
1921053--1921147	48	2.0	47	97	2	181	40	31	18	9	1.83
1928963--1929117	77	2.0	78	93	2	267	34	17	16	30	1.92
1932369--1932406	20	1.9	20	94	0	67	52	2	18	26	1.58
1936820--1936911	19	4.7	19	93	4	139	34	22	10	31	1.89
1937828--1937897	24	2.9	24	80	0	77	28	18	15	37	1.92
1940299--1940358	20	3.0	20	87	0	84	41	18	18	21	1.90
1940374--1940532	20	8.2	20	74	8	114	25	20	20	33	1.97
1940362--1940504	74	1.9	74	82	0	178	29	21	18	30	1.97
1941200--1941503	154	2.0	154	96	0	563	30	22	14	32	1.94
1942170--1942268	21	4.7	21	75	17	98	23	21	33	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1942170--1942268	42	2.4	42	78	13	114	23	21	33	22	1.97
1942412--1942465	4	13.5	4	84	0	72	68	3	1	25	1.16
1942813--1942887	39	1.9	39	88	0	114	29	6	42	21	1.78
1944415--1944462	20	2.4	20	89	0	69	45	18	14	20	1.85
1944466--1944527	20	3.1	20	92	0	97	12	17	22	46	1.82
1944846--1944893	22	2.2	22	92	0	78	20	12	43	22	1.86
1945051--1945136	20	4.3	20	86	0	127	17	11	23	47	1.80
1945105--1945609	250	2.0	250	100	0	1010	32	12	17	38	1.87
1948664--1948945	141	2.0	141	99	0	555	27	15	23	32	1.95
1953172--1953227	23	2.4	24	96	3	105	10	28	3	57	1.49
1958303--1958659	178	2.0	181	96	3	661	32	21	15	29	1.95
1962854--1963045	96	2.0	96	100	0	384	46	15	8	29	1.75
1963653--1964348	194	3.6	192	87	5	863	33	17	12	36	1.87
1966927--1966984	27	2.2	27	96	3	109	31	25	17	25	1.97
1967750--1969090	199	6.8	199	80	7	1386	33	15	12	37	1.86
1967795--1969090	377	3.3	387	81	9	1206	33	15	13	37	1.87
1971159--1971215	25	2.3	25	87	6	80	22	45	1	29	1.63
1971270--1971334	21	3.1	21	93	0	103	16	35	9	38	1.81
1971417--1971447	15	2.1	15	100	0	62	19	54	0	25	1.44
1973746--1974601	182	4.7	182	88	1	1153	27	16	14	40	1.88
1978424--1979363	463	2.0	469	95	1	1694	31	16	19	32	1.94
1982287--1982338	24	2.2	24	100	0	104	28	17	7	46	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1984327--1984718	68	5.8	68	89	0	577	31	23	14	30	1.94
1985058--1985274	58	3.7	58	84	4	294	33	19	14	32	1.92
1985054--1985274	117	1.9	115	87	3	327	33	19	14	33	1.92
1989881--1990192	68	4.6	68	82	2	351	33	23	12	30	1.92
1989881--1990205	136	2.4	135	83	1	400	32	23	12	30	1.92
1995210--1995252	23	1.9	22	90	4	68	13	11	4	69	1.33
1995403--1995541	68	2.0	68	95	0	251	30	25	16	27	1.97
1995864--1996123	58	4.5	58	88	1	342	35	20	11	31	1.89
1995883--1996123	117	2.1	117	88	2	360	35	20	12	31	1.89
1998456--1998499	19	2.3	19	92	0	70	36	15	25	22	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13