genome.fa.s8397.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008397.1 Hibiscus syriacus cultivar Beakdansim tig00111166_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2560905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  1  of  13  ( 1496 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3061--3092	15	2.1	16	94	5	57	6	25	18	50	1.70
3979--4021	12	3.5	12	96	3	77	18	48	18	13	1.80
17739--17763	12	2.1	12	100	0	50	28	32	0	40	1.57
18174--18207	2	18.0	2	88	11	54	50	0	0	50	1.00
18174--18207	17	2.0	17	94	0	59	50	0	0	50	1.00
31053--31189	60	2.3	59	75	14	138	35	15	10	37	1.83
40332--40371	12	3.3	13	80	16	50	67	0	5	27	1.11
69058--69134	40	1.9	39	86	2	109	44	0	1	54	1.08
69063--69143	40	2.1	39	83	4	101	44	0	1	54	1.08
69192--69239	21	2.2	22	85	10	64	20	4	0	75	0.97
69179--69237	10	5.7	10	72	7	55	22	3	1	72	1.08
77046--77118	37	2.0	37	97	0	137	36	15	17	30	1.91
82629--82674	19	2.4	19	92	0	74	32	10	30	26	1.90
83027--83064	15	2.6	15	83	4	51	50	0	0	50	1.00
83247--83289	20	2.3	19	84	11	61	25	30	6	37	1.82
84929--84979	20	2.6	20	87	3	68	23	11	27	37	1.90
85252--85282	12	2.6	12	100	0	62	9	19	32	38	1.84
89129--89214	36	2.4	35	82	5	100	41	22	9	26	1.83
89455--89521	31	2.2	31	86	5	102	49	8	5	35	1.59
93808--93834	14	1.9	14	100	0	54	0	29	0	70	0.88
102048--102098	20	2.5	21	80	6	59	29	1	1	66	1.13
102089--102125	13	2.6	15	87	8	51	40	0	2	56	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114881--114924	5	8.6	5	85	9	54	18	4	2	75	1.09
118710--118758	22	2.2	22	92	0	80	32	24	14	28	1.94
119163--119198	18	2.0	18	88	0	54	16	8	36	38	1.79
119727--119796	36	1.9	36	85	0	95	24	22	17	35	1.95
120135--120310	63	2.8	63	83	7	234	33	26	19	20	1.96
120143--120352	62	3.4	60	82	8	174	32	27	18	21	1.97
122090--122138	11	4.6	10	85	14	71	18	4	0	77	0.92
122090--122138	5	9.2	5	91	8	71	18	4	0	77	0.92
122162--122218	25	2.2	24	82	14	69	12	10	0	77	1.00
126740--126780	22	1.9	22	90	5	66	60	12	0	26	1.31
126941--126999	26	2.2	27	82	8	68	57	8	10	23	1.59
126986--127045	28	2.2	28	79	11	70	60	10	13	16	1.59
128649--128693	11	4.2	11	81	13	58	60	4	0	35	1.17
128645--128686	14	2.9	14	85	3	57	59	7	0	33	1.25
129155--129231	29	2.5	31	77	10	86	37	14	12	35	1.84
129466--129536	30	2.4	30	83	4	83	39	14	16	29	1.88
129682--129738	29	1.9	30	96	3	107	42	17	12	28	1.85
129685--129746	29	2.1	29	85	5	81	40	16	16	27	1.89
129827--129864	20	1.9	20	84	10	51	50	13	13	23	1.76
130820--130884	24	2.8	24	75	15	64	52	4	10	32	1.57
131731--131765	18	1.9	19	88	11	56	0	14	11	74	1.08
132393--132444	27	2.0	25	81	7	59	44	11	15	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134390--134950	283	2.0	278	96	3	1036	41	16	17	24	1.89
135818--135857	21	1.9	21	85	10	55	62	12	0	25	1.30
135994--136055	29	2.1	29	85	5	81	53	9	11	25	1.67
136015--136100	27	3.1	27	79	15	79	56	8	13	20	1.63
136032--136101	28	2.5	26	81	9	77	55	8	17	18	1.66
137740--137789	3	16.3	3	80	19	59	66	4	0	30	1.10
143808--143849	21	2.0	20	86	4	57	40	7	14	38	1.73
148395--148433	20	2.0	20	100	0	78	33	10	15	41	1.81
148435--148476	21	2.0	20	86	4	57	40	7	14	38	1.73
154631--154864	20	11.6	20	74	8	116	37	24	19	18	1.94
154631--154862	40	5.8	40	85	5	180	37	24	18	18	1.94
154631--154862	81	2.9	80	85	3	270	37	24	18	18	1.94
154692--154862	60	2.8	61	78	7	188	37	24	18	19	1.94
155377--155455	20	3.9	21	86	5	101	53	16	18	11	1.73
155432--155512	33	2.5	33	91	0	126	46	20	20	11	1.81
155513--155601	20	4.8	20	72	18	68	11	22	19	47	1.81
155879--156001	42	3.0	41	78	8	115	21	36	17	23	1.95
157478--157536	19	3.4	19	71	22	65	45	18	20	15	1.85
157478--157557	33	2.4	33	93	0	133	46	20	20	13	1.84
157563--157705	19	8.3	19	66	22	91	14	21	18	45	1.85
157567--157660	33	2.8	33	93	3	154	15	22	17	44	1.86
157567--157685	33	3.4	34	86	9	152	15	21	17	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157672--157699	14	2.0	14	100	0	56	14	21	21	42	1.88
157649--157747	33	2.9	33	74	3	81	16	20	21	42	1.89
161106--161147	21	2.0	21	95	0	75	23	21	28	26	1.99
161435--161499	33	2.0	31	91	5	103	30	15	29	24	1.96
162579--162755	92	1.9	92	95	0	318	37	19	15	27	1.92
162757--162804	21	2.1	21	85	11	60	60	2	2	35	1.20
163203--163259	31	1.9	29	83	16	73	40	5	24	29	1.77
165640--165692	24	2.2	24	89	0	79	39	20	16	22	1.92
166553--166721	60	2.8	59	82	3	196	20	18	21	38	1.94
166550--166745	20	9.8	20	75	12	127	20	18	21	39	1.93
166553--166781	40	5.7	40	86	2	280	20	18	22	38	1.93
166996--167062	19	3.5	19	89	0	89	40	11	13	34	1.81
167168--167209	21	2.0	21	90	0	66	26	21	26	26	1.99
167858--167911	20	2.7	19	75	8	63	16	18	31	33	1.93
168647--168824	93	1.9	93	92	0	302	38	19	14	28	1.90
168829--168870	22	1.9	22	85	9	59	66	2	2	28	1.16
169285--169341	31	1.9	29	83	16	73	40	5	24	29	1.77
171440--171521	34	2.4	34	97	0	155	47	32	4	14	1.66
171460--171514	17	3.2	17	66	19	51	47	32	5	14	1.67
178227--178261	13	2.8	13	95	4	63	31	17	37	14	1.89
178255--178319	11	6.1	11	73	22	59	36	26	23	13	1.92
178257--178410	42	4.0	42	73	22	183	34	24	29	11	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178279--178421	70	2.0	70	97	0	268	35	20	32	11	1.88
178420--178551	29	4.5	30	94	4	218	15	28	31	25	1.95
178840--178892	21	2.5	21	96	0	97	62	0	35	1	1.06
178838--178869	17	1.9	16	93	6	55	62	0	37	0	0.95
179092--179183	46	2.0	48	87	8	136	41	0	11	46	1.41
179343--179389	16	3.0	16	84	9	53	29	0	10	59	1.31
179364--179394	15	2.1	14	94	5	53	38	0	6	54	1.26
193901--193962	31	2.0	31	100	0	124	58	3	12	25	1.50
199395--199477	41	2.0	41	95	0	148	40	12	19	27	1.87
199456--199515	30	2.0	30	93	0	102	43	13	23	20	1.86
207129--207170	3	14.3	3	95	5	77	66	0	0	33	0.92
207133--207167	17	2.1	17	100	0	70	65	0	0	34	0.93
207130--207170	20	2.0	20	100	0	82	65	0	0	34	0.93
208312--208344	15	2.2	15	94	0	57	54	0	0	45	0.99
217810--217873	31	2.1	31	82	5	78	28	10	3	57	1.48
217911--217935	3	8.3	3	100	0	50	32	0	0	68	0.90
219717--219759	20	2.2	20	83	8	52	62	0	6	30	1.21
226639--226669	3	10.3	3	100	0	62	0	35	0	64	0.94
228023--228111	29	3.1	29	98	0	169	14	31	35	17	1.91
228157--228271	16	7.1	16	71	11	99	22	7	53	16	1.69
228149--228297	33	4.5	33	84	10	196	22	8	51	16	1.72
228144--228275	65	2.0	66	94	2	230	24	9	50	15	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
228711--228754	21	2.1	21	91	0	70	29	0	15	54	1.42
228731--228793	28	2.2	30	91	5	103	31	0	11	57	1.34
229299--229343	21	2.2	21	84	4	56	35	0	8	55	1.31
230150--230405	35	7.3	35	71	22	166	19	21	35	22	1.96
230222--230272	26	2.0	26	100	0	102	21	23	35	19	1.96
230218--230351	67	2.0	67	98	0	259	18	22	38	20	1.94
230283--230340	26	2.2	26	100	0	116	17	24	39	18	1.92
233420--233453	10	3.4	10	87	0	50	20	5	0	73	1.04
242811--242908	52	1.9	51	87	2	142	47	15	22	14	1.81
243653--244515	105	8.3	105	93	1	1398	33	25	18	23	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13