genome.fa.s8397.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008397.1 Hibiscus syriacus cultivar Beakdansim tig00111166_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2560905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  9  of  13  ( 1496 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1615735--1615769	3	12.3	3	88	11	56	34	0	0	65	0.93
1616441--1616486	20	2.3	20	100	0	92	23	34	15	26	1.94
1618490--1618555	13	4.9	13	70	7	51	66	3	4	25	1.25
1618508--1618560	27	2.0	27	85	7	72	64	5	3	26	1.33
1619050--1619117	32	2.1	32	88	0	100	27	14	17	39	1.89
1624782--1624848	35	1.9	35	87	6	100	35	10	22	31	1.88
1629605--1629716	60	1.9	59	81	1	134	32	18	15	33	1.92
1630040--1630157	60	2.0	60	82	0	146	42	18	11	27	1.84
1636660--1636709	26	1.9	26	84	8	66	38	20	2	40	1.64
1649534--1649568	17	2.0	18	88	5	54	62	2	0	34	1.10
1650071--1650109	16	2.3	17	86	8	53	56	2	0	41	1.13
1651670--1651707	18	2.1	18	90	0	58	21	5	10	63	1.46
1657216--1657263	23	2.1	23	84	0	60	41	6	16	35	1.74
1657358--1657858	200	2.5	198	86	3	715	33	15	12	38	1.85
1657696--1658006	147	2.1	148	88	4	459	33	14	11	39	1.83
1658430--1658471	15	2.9	14	83	16	59	80	4	0	14	0.86
1658461--1658493	17	2.0	17	94	5	59	66	0	15	18	1.25
1658550--1658593	18	2.4	18	84	0	52	75	4	4	15	1.14
1658611--1658711	9	11.6	8	73	13	58	74	1	2	20	1.05
1658613--1658831	17	12.8	17	65	19	82	70	2	4	22	1.19
1658621--1658703	43	2.0	41	86	9	114	72	2	1	24	1.04
1658691--1658742	24	2.2	24	86	6	72	67	5	7	19	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1658787--1658832	18	2.6	17	81	18	58	80	0	2	17	0.81
1660647--1660769	33	3.6	34	89	7	194	30	8	19	40	1.82
1660652--1660862	70	3.1	70	81	10	199	31	10	21	35	1.88
1660722--1660921	66	3.0	65	82	11	192	36	12	21	30	1.89
1661020--1661105	36	2.4	36	86	0	109	39	12	22	25	1.89
1660992--1661292	101	3.0	101	91	2	505	37	11	20	30	1.88
1661122--1661206	36	2.4	36	83	0	107	43	12	22	21	1.86
1661289--1661419	36	3.6	36	66	6	102	41	11	16	29	1.84
1661275--1661450	73	2.4	73	91	1	273	40	11	18	28	1.86
1662346--1662714	184	2.0	185	99	0	731	30	20	15	34	1.93
1668526--1668568	16	2.6	16	85	3	50	27	11	4	55	1.55
1668525--1668568	17	2.6	17	82	10	54	27	11	6	54	1.61
1669353--1669441	45	1.9	45	90	4	133	28	12	23	35	1.91
1679126--1679225	30	3.4	30	72	18	84	77	0	16	7	0.98
1679123--1679219	16	6.1	15	73	17	72	77	0	14	8	0.99
1679086--1679210	14	8.9	13	71	20	76	77	0	13	8	0.98
1680391--1680749	51	6.8	52	86	8	368	29	16	25	28	1.97
1680551--1680755	110	1.8	110	84	3	259	30	18	21	29	1.97
1683480--1683522	16	2.6	16	85	3	50	27	11	4	55	1.55
1683479--1683522	17	2.6	17	82	10	54	27	11	6	54	1.61
1684314--1684435	7	16.1	7	73	18	77	75	1	4	18	1.05
1684322--1684368	20	2.3	22	82	17	57	78	0	4	17	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1684322--1684405	18	4.6	17	72	18	62	75	1	4	19	1.05
1684382--1684438	25	2.3	25	75	6	62	77	1	1	19	0.95
1688154--1688197	19	2.3	19	88	0	61	54	4	6	34	1.47
1689818--1691010	200	6.0	200	85	3	1403	31	15	13	38	1.87
1692263--1692299	18	2.1	18	89	0	56	51	10	5	32	1.60
1694299--1695157	98	8.3	104	82	7	781	22	21	24	32	1.98
1694347--1695157	206	3.9	202	77	11	709	21	21	24	32	1.98
1694842--1695013	55	3.4	53	68	22	152	16	23	27	31	1.96
1695452--1695674	68	3.3	67	80	5	227	37	10	21	30	1.87
1695452--1695910	65	6.7	67	72	10	238	39	11	20	28	1.87
1695683--1695713	15	2.1	15	93	0	53	41	9	19	29	1.83
1695650--1695930	36	8.0	35	76	12	236	40	12	19	26	1.88
1695592--1695911	138	2.3	137	83	3	410	40	11	20	27	1.87
1695792--1695964	36	4.8	36	82	4	154	41	15	20	23	1.90
1695799--1695972	72	2.4	72	85	4	219	39	14	20	25	1.91
1696833--1696883	22	2.3	22	96	0	93	25	11	27	35	1.91
1697490--1697546	22	2.7	22	81	8	73	1	15	7	75	1.10
1697510--1697552	22	2.0	23	86	9	63	0	20	4	74	1.00
1700958--1700985	4	7.0	4	100	0	56	75	0	0	25	0.81
1702134--1702206	26	2.8	27	75	10	71	61	1	2	34	1.19
1702587--1702676	35	2.5	36	83	8	112	30	15	14	40	1.87
1704052--1704085	6	5.7	6	89	0	50	20	32	2	44	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1705139--1705167	15	1.9	15	100	0	58	27	6	37	27	1.82
1705235--1705281	23	2.0	23	95	0	85	65	19	6	8	1.41
1705491--1707052	200	7.8	201	87	1	2147	32	14	14	38	1.86
1705491--1707052	401	3.9	402	86	1	2149	32	14	14	38	1.86
1707501--1707549	19	2.6	19	96	0	89	57	10	0	32	1.32
1709879--1710716	365	2.3	361	86	4	1148	26	17	14	42	1.86
1709893--1710716	182	4.5	181	90	1	1127	25	17	14	42	1.86
1710707--1710736	10	3.0	10	90	0	51	36	10	23	30	1.87
1719833--1719864	11	2.8	12	90	9	50	21	0	0	78	0.76
1719833--1719881	14	3.4	14	91	2	71	28	0	0	71	0.86
1721232--1721292	29	2.1	28	81	3	68	22	9	4	62	1.46
1721252--1721312	28	2.2	28	94	5	106	19	6	3	70	1.24
1721252--1721319	28	2.4	29	90	7	95	20	5	4	69	1.28
1730647--1730702	25	2.2	27	84	9	73	37	1	1	58	1.19
1734203--1735217	106	10.0	106	88	9	1475	22	18	25	33	1.96
1734489--1734644	43	3.4	43	68	13	132	21	19	25	33	1.96
1734453--1735217	94	7.8	94	87	10	1127	22	17	25	34	1.96
1734347--1735217	200	4.4	200	97	0	1618	22	17	25	34	1.96
1734689--1734844	43	3.4	43	67	13	132	21	18	25	34	1.96
1734203--1735217	400	2.5	400	93	3	1705	22	18	25	33	1.96
1744859--1744927	21	3.3	20	68	22	52	55	5	1	37	1.33
1744868--1744935	21	3.2	20	67	22	50	54	4	1	39	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1744850--1744939	42	2.2	42	93	2	155	54	4	1	40	1.28
1745906--1745933	3	9.3	3	100	0	56	0	32	0	67	0.91
1755342--1755474	64	2.1	64	94	0	230	41	17	18	22	1.90
1758138--1758189	17	3.2	17	75	10	54	32	1	13	51	1.52
1762188--1762251	29	2.2	30	85	2	85	48	9	7	34	1.64
1764502--1764582	27	2.9	28	76	12	76	58	4	12	24	1.54
1765371--1765420	12	4.4	12	80	12	61	62	20	2	16	1.43
1765378--1765423	22	2.0	22	87	4	65	65	17	2	15	1.37
1765378--1765408	16	1.9	16	93	0	53	67	16	3	12	1.35
1765394--1765423	6	5.2	6	92	8	53	66	16	0	16	1.25
1765863--1765898	17	2.1	17	94	0	63	27	16	16	38	1.90
1768571--1768605	17	2.1	17	94	0	61	28	17	14	40	1.88
1776380--1776446	20	3.3	20	77	4	80	40	17	23	17	1.91
1776397--1776472	21	3.7	21	73	3	82	39	17	26	17	1.91
1776461--1776554	20	4.7	20	80	2	89	34	24	17	24	1.96
1776380--1776472	41	2.3	41	96	0	168	38	17	25	18	1.92
1776458--1776535	41	1.9	41	89	0	120	39	21	15	23	1.91
1777075--1777142	20	3.5	19	82	6	82	47	25	17	10	1.79
1777138--1777303	20	9.1	19	72	16	118	12	21	21	43	1.85
1777143--1777219	39	2.0	39	82	5	93	10	18	24	46	1.80
1777191--1777278	33	2.6	33	90	1	131	11	23	25	39	1.88
1779306--1779428	42	2.9	42	79	4	115	23	36	17	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1780786--1780821	14	2.6	14	95	0	63	30	0	25	44	1.54
1781004--1781130	33	3.9	32	85	8	175	14	21	19	44	1.87
1780997--1781126	66	2.0	66	95	0	233	16	20	19	43	1.87
1783422--1783446	12	2.1	12	100	0	50	0	28	0	72	0.86
1783621--1783674	24	2.2	24	90	0	81	38	20	16	24	1.92
1784655--1784708	19	2.8	19	94	0	90	42	18	22	16	1.89
1784698--1784765	19	3.8	19	85	12	92	13	20	17	48	1.80
1786788--1786854	19	3.5	19	83	4	89	37	23	23	14	1.93
1786843--1786900	14	3.9	14	79	16	71	48	25	17	8	1.75
1786827--1786905	32	2.4	33	95	2	142	46	24	18	10	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13