genome.fa.s8397.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008397.1 Hibiscus syriacus cultivar Beakdansim tig00111166_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2560905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  2  of  13  ( 1496 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
251557--251617	2	30.5	2	100	0	122	50	0	0	49	1.00
251608--251681	37	2.1	36	85	10	98	55	8	5	31	1.52
252164--252193	14	2.1	15	93	6	53	70	3	6	20	1.25
252571--252642	35	2.1	35	94	0	126	27	19	9	43	1.82
253126--253682	106	5.4	106	83	6	692	23	19	22	34	1.97
253126--253679	210	2.7	209	86	4	759	23	19	22	33	1.97
253480--253662	95	1.9	95	90	0	294	20	21	22	35	1.96
254304--254348	20	2.2	21	88	4	65	2	17	4	75	1.07
260317--260363	19	2.4	19	82	10	60	12	21	10	55	1.67
280269--280354	18	4.8	17	75	19	61	73	1	10	15	1.16
280279--280343	13	4.8	13	78	17	53	73	0	9	16	1.07
280294--280335	9	4.7	9	78	21	52	78	0	4	16	0.91
280404--280483	40	2.0	40	86	9	112	56	7	5	31	1.49
280838--280954	53	2.2	55	80	9	125	58	1	5	34	1.30
280960--280995	18	2.1	18	89	5	56	66	2	5	25	1.27
281373--281444	35	2.1	35	97	0	135	27	19	11	41	1.85
282402--282459	14	4.4	14	70	16	52	60	17	8	13	1.58
282407--282469	24	2.7	23	82	7	81	61	17	7	12	1.54
282445--282471	10	2.7	10	100	0	54	59	11	11	18	1.60
292882--292928	20	2.3	20	100	0	94	8	19	17	55	1.67
294017--294051	9	3.9	9	84	0	52	22	65	8	2	1.34
297411--297505	31	3.1	31	80	3	111	34	21	17	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301666--301772	30	3.5	31	79	6	94	35	22	18	23	1.96
301679--301772	30	3.1	31	80	6	111	35	21	18	25	1.95
307933--307989	24	2.4	24	96	0	105	42	21	17	19	1.90
313426--313461	2	18.0	2	100	0	72	50	0	0	50	1.00
314019--314043	6	4.2	6	100	0	50	20	16	64	0	1.30
314101--314144	13	3.5	13	90	6	72	18	52	15	13	1.75
314200--314239	19	2.1	19	85	0	53	55	0	0	45	0.99
314260--314305	12	3.9	12	88	2	67	30	47	10	10	1.73
314260--314305	24	2.0	24	91	4	76	30	47	10	10	1.73
323105--323181	31	2.5	31	73	2	82	27	28	27	16	1.97
327923--327964	2	21.0	2	100	0	84	50	0	0	50	1.00
328321--328361	20	2.0	20	85	0	55	24	19	34	21	1.97
340168--340228	23	2.7	23	86	0	77	42	8	19	29	1.80
340141--340302	87	1.9	87	88	0	243	42	9	16	31	1.80
340330--340776	200	2.2	199	82	7	534	33	16	12	37	1.86
340684--340876	106	1.8	107	85	3	273	31	16	11	40	1.84
343937--344944	201	5.0	202	80	5	1155	31	14	16	37	1.89
343939--344945	405	2.5	404	91	2	1546	31	14	16	37	1.89
345843--345905	19	3.3	19	65	12	56	38	14	3	44	1.61
345844--345909	23	3.2	23	61	34	58	36	13	3	46	1.59
345829--345930	39	2.6	39	100	0	204	36	14	1	47	1.56
346525--346914	181	2.2	181	87	2	561	29	16	11	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
347067--347091	11	2.3	11	100	0	50	36	24	8	32	1.84
347504--347530	6	4.5	6	100	0	54	48	0	14	37	1.45
352566--352595	15	2.0	15	100	0	60	46	0	0	53	1.00
356402--356443	21	2.0	21	100	0	84	28	23	9	38	1.86
357155--357184	14	2.1	15	93	6	53	33	0	0	66	0.92
359789--359917	59	2.2	59	83	8	163	33	13	17	35	1.89
363985--364028	17	2.6	17	100	0	88	13	15	0	70	1.17
364830--364888	25	2.4	25	94	0	100	8	38	15	37	1.78
367610--367649	21	1.9	21	89	0	62	37	17	17	27	1.92
368774--368815	16	2.5	17	76	11	50	28	23	0	47	1.52
371969--372012	20	2.2	20	95	0	79	20	27	4	47	1.69
374528--374718	101	1.9	101	82	6	244	36	16	14	32	1.89
374874--374957	23	3.7	23	95	3	143	35	25	25	14	1.93
374874--374991	46	2.6	46	84	9	136	38	23	21	16	1.93
374997--375076	21	3.8	21	74	12	65	42	15	12	30	1.83
378731--379311	78	7.5	77	76	5	451	30	26	15	27	1.96
383688--383779	8	10.5	8	69	19	51	78	5	1	15	0.99
383693--383735	19	2.2	19	88	12	61	83	2	0	13	0.74
383688--383778	37	2.5	36	77	12	96	78	5	1	15	1.00
383688--383783	26	3.7	27	73	8	83	78	5	1	15	0.99
383754--383786	10	3.2	11	87	12	52	75	0	0	24	0.80
383915--383942	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383885--384033	71	2.1	74	81	11	175	66	3	3	26	1.23
383996--384056	21	2.9	21	77	2	59	67	0	1	31	1.01
386050--386212	57	2.9	57	95	0	290	23	11	22	42	1.86
387038--387089	21	2.5	21	87	9	72	1	19	1	76	0.97
387048--387098	19	2.8	17	76	23	59	0	19	1	78	0.85
396082--396278	29	6.9	30	83	5	214	39	4	20	36	1.72
397159--397235	31	2.5	31	78	2	82	14	25	31	28	1.95
397298--397350	25	2.1	25	85	0	70	28	9	15	47	1.76
399845--399869	9	2.8	9	100	0	50	72	8	0	20	1.10
399863--399902	6	6.3	6	83	11	53	80	2	0	17	0.83
399821--399902	19	4.3	19	73	9	60	74	3	3	18	1.12
399837--399927	25	3.3	26	80	11	78	72	6	2	18	1.17
400046--400076	16	1.9	16	93	0	53	80	12	3	3	0.95
400090--400127	14	2.4	16	87	12	53	65	0	0	34	0.93
400123--400147	7	3.6	7	100	0	50	88	0	0	12	0.53
400065--400206	65	2.2	66	82	8	166	69	1	2	26	1.08
401348--401392	22	2.0	22	83	8	56	51	2	4	42	1.34
402361--402979	81	7.7	81	85	1	778	27	26	16	28	1.97
402361--403956	162	9.8	162	87	2	2179	26	26	17	28	1.98
402361--403956	243	6.5	243	87	2	2183	26	26	17	28	1.98
402898--403156	81	2.9	95	75	16	303	26	25	20	27	1.99
402980--403956	81	12.0	81	91	0	1477	26	26	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403897--404020	66	1.9	66	84	3	169	27	29	10	33	1.90
405431--405460	12	2.5	12	94	0	51	20	0	6	73	1.05
407210--407255	19	2.4	19	74	0	56	28	0	4	67	1.10
407677--407718	15	2.8	15	82	13	59	30	0	0	69	0.89
418434--418865	217	2.0	208	90	4	666	31	19	18	30	1.95
431893--432428	145	3.7	144	78	6	384	22	25	20	31	1.98
432941--432991	3	16.7	3	83	4	66	62	0	1	35	1.06
433184--433655	111	4.2	111	89	2	671	29	16	22	31	1.96
433184--433655	220	2.1	223	88	2	691	29	16	22	31	1.96
433582--434289	66	10.8	66	93	2	1216	31	17	20	29	1.96
433582--434289	195	3.6	198	94	2	1216	31	17	20	29	1.96
433582--434289	261	2.7	262	93	2	1203	31	17	20	29	1.96
435471--435506	12	2.7	14	83	16	58	13	19	0	66	1.24
446892--446952	2	32.0	2	90	9	101	50	0	0	49	1.00
447508--448043	145	3.7	144	80	4	488	21	25	22	31	1.98
448556--448606	3	16.7	3	83	4	66	62	0	1	35	1.06
449200--449259	16	3.8	16	88	0	84	58	18	11	11	1.63
449633--449664	14	2.3	14	100	0	64	50	28	15	6	1.68
450645--450773	53	2.5	52	89	1	204	39	4	33	22	1.75
450645--450838	53	3.7	53	81	2	176	41	4	31	23	1.73
450843--450873	6	5.2	6	96	0	53	3	0	51	45	1.17
451512--451660	26	5.6	26	78	11	135	43	6	7	42	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451523--451579	15	3.6	15	70	21	53	45	8	5	40	1.58
451509--451835	33	9.5	33	83	9	404	44	6	6	42	1.56
451512--451835	101	3.1	102	84	7	381	44	6	6	42	1.56
451734--451787	15	3.4	15	72	22	56	44	9	5	40	1.60
451512--451615	18	6.1	18	68	20	80	42	6	7	43	1.59
451823--451879	22	2.6	22	100	0	114	43	7	5	43	1.54
452592--452769	94	1.9	94	88	0	266	35	21	17	25	1.95
453351--453443	21	4.5	21	78	4	100	39	18	24	17	1.91
453351--453443	41	2.3	41	100	0	186	39	18	24	17	1.91
453370--453504	41	3.3	41	82	6	132	38	20	21	19	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13