genome.fa.s8397.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008397.1 Hibiscus syriacus cultivar Beakdansim tig00111166_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2560905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  5  of  13  ( 1496 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
849894--849923	13	2.3	13	100	0	60	53	6	0	40	1.27
849863--849913	20	2.4	21	74	9	59	45	5	7	41	1.57
850038--850068	14	2.2	14	94	0	53	54	29	0	16	1.42
850440--850469	13	2.3	13	94	0	51	50	6	3	40	1.45
850409--850459	20	2.4	21	74	9	59	45	5	7	41	1.57
850544--850613	14	5.1	14	75	6	63	50	28	0	21	1.49
850544--850619	40	1.9	40	86	5	109	50	26	0	23	1.50
850778--850824	14	3.7	14	71	26	50	51	4	0	44	1.21
850776--850825	23	2.1	24	96	3	93	48	4	0	48	1.20
851093--851179	16	5.4	16	87	0	120	39	12	27	20	1.89
852823--852855	16	2.1	16	94	0	57	21	0	3	75	0.93
853696--853752	29	2.0	29	89	0	87	28	3	19	49	1.65
856603--856639	17	2.2	17	90	4	58	24	8	0	67	1.17
857131--857166	2	17.5	2	94	5	63	47	2	0	50	1.15
870075--870107	15	2.3	15	90	10	52	72	12	3	12	1.23
871822--871849	13	2.2	13	100	0	56	14	32	0	53	1.41
873711--873936	22	10.6	22	83	5	295	49	9	0	41	1.36
873919--873962	21	2.0	23	86	8	65	54	0	2	43	1.12
883623--883770	43	3.4	43	87	0	188	19	15	21	43	1.88
883614--883826	43	5.0	43	80	1	171	23	14	21	41	1.89
887124--887376	41	6.1	41	70	12	169	32	17	17	32	1.94
887194--887437	82	3.0	82	84	3	285	34	18	16	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
900928--900959	2	16.5	2	93	6	57	50	0	0	50	1.00
904251--904284	18	1.9	18	88	5	52	14	29	32	23	1.94
904266--904317	24	2.2	24	96	0	95	19	28	28	23	1.98
904556--904601	19	2.4	19	96	0	83	47	0	13	39	1.42
905156--905202	21	2.2	21	88	0	76	19	25	19	36	1.95
905198--905245	20	2.4	20	89	0	69	41	14	16	27	1.87
905207--905253	20	2.3	20	92	0	76	40	12	19	27	1.88
905217--905344	40	3.2	40	87	2	114	29	25	19	25	1.98
905245--905344	20	5.0	20	95	0	173	26	28	21	25	1.99
905217--905344	60	2.1	60	84	2	159	29	25	19	25	1.98
906165--906218	24	2.2	24	93	0	90	20	18	20	40	1.91
908462--908501	18	2.2	18	86	0	53	52	25	2	20	1.59
908556--908821	140	1.9	140	98	0	514	28	13	15	42	1.84
908796--909109	20	16.6	20	74	11	243	32	21	19	27	1.97
908796--909109	54	5.6	54	78	8	222	32	21	19	27	1.97
908892--909064	80	2.2	80	91	2	285	30	19	20	30	1.97
909103--909141	20	2.0	20	94	0	69	7	20	23	48	1.75
909109--909156	20	2.4	20	79	6	53	14	16	22	45	1.84
909255--909316	14	4.3	14	73	6	52	46	16	0	37	1.47
911988--912112	31	4.0	31	96	2	225	18	19	24	38	1.93
915581--915740	64	2.5	64	84	4	189	33	19	18	28	1.96
916388--916563	31	5.7	31	95	0	298	21	19	20	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
917579--917683	42	2.5	42	76	6	106	22	18	35	23	1.96
918170--918223	20	2.7	20	85	0	72	38	22	16	22	1.93
918468--918529	20	3.1	20	88	4	90	33	25	17	22	1.96
918578--918645	20	3.4	20	85	0	91	22	19	25	33	1.97
918793--918842	18	2.8	18	100	0	100	42	6	20	32	1.76
920565--920620	20	2.8	20	91	0	85	50	23	16	10	1.76
921051--921093	22	2.0	22	90	0	68	23	13	37	25	1.92
921262--921399	20	6.8	20	72	11	82	30	20	23	25	1.98
922965--923010	23	2.0	23	95	0	83	26	6	52	15	1.67
923302--923630	122	2.7	123	80	5	360	27	18	14	38	1.90
923936--924494	45	12.7	44	84	5	620	30	18	23	27	1.98
923936--924487	179	3.1	176	85	5	683	30	18	23	27	1.98
924416--924478	21	3.0	21	72	9	65	22	22	25	30	1.99
924452--924626	74	2.4	74	97	0	323	30	21	19	28	1.98
925703--925808	55	1.9	55	86	3	151	29	18	14	37	1.90
928164--928305	72	2.0	72	92	2	241	35	19	20	25	1.96
931964--932002	19	2.1	18	85	9	51	35	15	7	41	1.76
936311--936337	13	2.1	13	100	0	54	25	22	14	37	1.93
936384--936420	2	18.5	2	100	0	74	48	0	0	51	1.00
936799--937044	117	2.1	118	84	3	318	39	14	14	31	1.85
937072--937539	131	3.6	131	86	3	615	34	11	11	43	1.76
938998--939053	22	2.5	22	97	0	103	12	26	32	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
939016--939072	18	2.9	19	87	10	71	17	21	33	28	1.96
944751--944827	21	3.5	21	73	16	75	42	3	12	40	1.62
944753--944823	24	3.0	24	67	29	71	42	4	12	40	1.62
944721--944823	46	2.3	44	90	8	154	39	4	12	42	1.64
945197--945357	66	2.5	64	83	6	191	30	21	19	29	1.97
945329--945377	19	2.6	19	84	9	57	24	30	18	26	1.98
951134--951215	23	3.6	22	81	8	103	24	25	24	25	2.00
953493--953539	24	1.9	25	91	4	78	44	0	38	17	1.48
953508--953571	30	2.1	30	91	0	101	50	1	28	20	1.58
953961--954121	64	2.5	66	84	4	202	30	21	18	29	1.97
954093--954141	19	2.6	19	84	9	57	24	30	18	26	1.98
953961--954141	64	2.8	64	81	6	186	29	22	18	29	1.98
955819--956214	199	2.0	198	86	2	553	37	12	10	40	1.77
956412--956879	197	2.4	196	87	4	645	34	13	12	39	1.82
961153--961181	2	14.5	2	100	0	58	48	0	0	51	1.00
969855--970060	114	1.8	112	88	2	313	41	15	14	28	1.86
971374--971403	3	10.3	3	92	7	53	63	0	0	36	0.95
981018--981055	2	19.0	2	100	0	76	50	0	0	50	1.00
992054--992104	2	25.5	2	87	0	75	52	0	0	47	1.00
992088--992131	23	1.9	23	85	0	61	52	0	0	47	1.00
992303--992348	2	23.0	2	95	0	83	52	0	0	47	1.00
992362--992428	17	4.1	17	69	21	54	62	1	4	31	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
993840--994732	112	8.0	112	85	4	1095	28	18	15	37	1.91
994194--994250	17	3.2	17	70	18	53	19	21	8	50	1.74
993840--994734	225	4.0	225	85	4	1193	28	18	15	37	1.91
995136--995190	22	2.5	22	87	0	83	36	14	14	34	1.87
995610--995688	40	2.0	40	100	0	158	30	22	13	32	1.93
995652--995755	54	1.9	54	94	0	181	25	25	14	35	1.93
997911--998100	93	2.1	92	87	1	272	34	21	15	27	1.94
1004864--1004912	13	3.8	13	76	10	55	73	0	0	26	0.83
1004867--1004924	16	3.6	15	81	11	62	72	0	1	25	0.94
1004867--1004924	23	2.6	23	78	10	66	72	0	1	25	0.94
1005452--1005484	2	17.0	2	87	6	50	48	0	0	51	1.00
1005468--1005509	21	1.9	21	85	9	57	54	0	0	45	0.99
1005671--1005706	2	18.0	2	94	0	63	52	0	0	47	1.00
1005641--1005713	22	3.3	22	75	7	58	52	1	1	45	1.18
1005649--1005703	18	3.2	18	82	7	69	56	1	0	41	1.10
1005724--1005790	17	4.1	17	69	21	54	62	1	4	31	1.24
1006640--1006666	14	1.9	14	100	0	54	0	11	0	88	0.50
1007375--1007454	38	2.1	39	95	2	144	13	28	13	43	1.83
1013257--1013706	224	2.0	225	97	2	861	24	20	18	36	1.95
1014661--1014719	26	2.3	27	82	8	77	57	0	0	42	0.98
1014665--1014715	12	4.2	12	76	11	50	54	0	0	45	0.99
1015043--1015716	113	6.0	113	91	2	1016	29	19	14	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1016509--1016632	50	2.5	48	82	5	158	32	22	12	32	1.92
1016538--1016649	50	2.2	50	93	0	188	25	22	16	36	1.94
1020195--1020255	30	2.0	30	90	0	95	21	16	14	47	1.82
1020686--1020727	20	2.0	21	86	4	59	0	11	0	88	0.53
1024089--1024126	18	2.1	18	100	0	76	42	5	26	26	1.76
1024298--1024361	23	2.7	23	83	11	78	28	25	26	20	1.99
1024377--1024592	102	2.1	102	95	1	398	36	25	13	25	1.92
1025063--1025097	18	1.9	18	88	0	52	11	28	34	25	1.91
1032007--1032045	20	2.0	20	89	0	60	17	17	30	33	1.94
1032803--1032866	30	2.1	30	97	0	119	15	28	17	39	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13